Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Reverse (-)

32383190 .. 32383709

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGCTCTTCATATTGCTCTGCTCTTCATATTGCTGCCGCTAATGGCCAGATCGAGATTCTTTCTCTGCTGTTGGAACCATCTGTAAATCTTGATGCGTTGAATCGTCACAAGCAGACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTGGGAGCGAAGTGGGAGCAAATATATGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

70

Amino Acids

7.6

Weight (kDa)

7.84

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	6 - 63	9.7e-13	Ankyrin repeats (3 copies)
Ank_4	PF13637	9 - 58	2.8e-08	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 122
AcoI	YGGCCR	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	103, 176
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	35, 134
BalI	TGGCCA	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	22, 121
BccI	CCATC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	3 cut(s)	36, 39, 135
BlsI	GCNGC	3 cut(s)	37, 40, 136
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	22, 121
BshFI	GGCC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	51, 150
BspACI	CCGC	2 cut(s)	39, 122
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	78
BspQI	GCTCTTC	2 cut(s)	13, 30
BsrDI	GCAATG	1 cut(s)	144
BssMI	GATC	2 cut(s)	51, 150
Bst6I	CTCTTC	2 cut(s)	13, 30
BstC8I	GCNNGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	54, 153
BstMBI	GATC	2 cut(s)	51, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	22, 121
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	161
CviAII	CATG	2 cut(s)	143, 156
CviJI	RGCY	4 cut(s)	6, 48, 134, 169
CviKI_1	RGCY	4 cut(s)	6, 48, 134, 169
DpnI	GATC	2 cut(s)	53, 152
DpnII	GATC	2 cut(s)	51, 150
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	13, 30
EarI	CTCTTC	2 cut(s)	13, 30
Eco24I	GRGCYC	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	146, 159
FaiI	YATR	7 cut(s)	13, 30, 128, 144, 157, 202, 204
FatI	CATG	2 cut(s)	142, 155
Fnu4HI	GCNGC	3 cut(s)	36, 39, 135
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	36, 39, 135
GluI	GCNGC	3 cut(s)	36, 39, 135
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	146, 159
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	58, 103, 118
Hpy188III	TCNNGA	3 cut(s)	55, 92, 173
HpyCH4V	TGCA	2 cut(s)	137, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	146, 159
Kzo9I	GATC	2 cut(s)	51, 150
LguI	GCTCTTC	2 cut(s)	13, 30
LmnI	GCTCC	2 cut(s)	182, 193
LpnPI	CCDG	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	22, 121
LweI	GCATC	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	53, 152
MboI	GATC	2 cut(s)	51, 150
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	54
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	2 cut(s)	51, 150
NlaIII	CATG	2 cut(s)	146, 159
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	144
PciSI	GCTCTTC	2 cut(s)	13, 30
PfeI	GAWTC	2 cut(s)	58, 103
PkrI	GCNGC	3 cut(s)	37, 40, 136
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	150
SapI	GCTCTTC	2 cut(s)	13, 30
SatI	GCNGC	3 cut(s)	36, 39, 135
Sau3AI	GATC	2 cut(s)	51, 150
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	85
SgeI	CNNG	9 cut(s)	61, 67, 104, 124, 155, 160, 168, 172, 185
SsiI	CCGC	2 cut(s)	39, 122
TaqI	TCGA	1 cut(s)	54
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	58, 103
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	35, 134
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.