Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Reverse (-)

25699876 .. 25700475

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTCAGGGACTGAGTTGCGGAGCGAGTGATGAGCATGGGCTCTTCAGCGCCGTGCAACTTGGGGACCTGGAGACGGTGGAGGCTTTGGTAGAGAGAGACTCGGCTATCTTGCATCACACCACCGTGTATGATCGTCACTTTGCTCTTCATATTTCTGCCGCTAATGGTCAGATCGAGATTCTTTCTCTGTTGTTGGAACAATCTGTAAATCCTGATGCGTTGAATTGTCACAAGCTGACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTGGGAGCAAATGTATGTGAAAAATCACAGCTTTGGTTTGGTTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

118

Amino Acids

12.71

Weight (kDa)

5.32

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 107	4.1e-16	Ankyrin repeats (3 copies)
Ank_4	PF13637	50 - 99	9.8e-06	Ankyrin repeats (many copies)
Ank	PF00023	80 - 108	3.4e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 162, 245
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	226, 299
AjnI	CCWGG	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	238, 292, 331
AluI	AGCT	3 cut(s)	238, 292, 331
Alw26I	GTCTC	2 cut(s)	68, 93
AlwNI	CAGNNNCTG	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	68, 93
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	2 cut(s)	162, 258
BlsI	GCNGC	2 cut(s)	163, 259
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	124, 208
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	68, 93
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	24, 80
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	133, 174, 273
BspACI	CCGC	3 cut(s)	21, 162, 245
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	68
BspQI	GCTCTTC	2 cut(s)	50, 153
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	3 cut(s)	133, 174, 273
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	79, 127
Bst6I	CTCTTC	2 cut(s)	50, 153
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	136, 177, 276
BstMAI	GTCTC	2 cut(s)	68, 93
BstMBI	GATC	3 cut(s)	133, 174, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	3 cut(s)	38, 266, 279
CviJI	RGCY	7 cut(s)	43, 86, 107, 238, 257, 292, 331
CviKI_1	RGCY	7 cut(s)	43, 86, 107, 238, 257, 292, 331
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	3 cut(s)	135, 176, 275
DpnII	GATC	3 cut(s)	133, 174, 273
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	3 cut(s)	41, 269, 282
FaiI	YATR	7 cut(s)	39, 132, 153, 251, 267, 280, 316
FaqI	GGGAC	2 cut(s)	24, 80
FatI	CATG	3 cut(s)	37, 265, 278
Fnu4HI	GCNGC	2 cut(s)	162, 258
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	162, 258
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	162, 258
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	54
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	41, 269, 282
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	101, 181, 241
Hpy188I	TCNGA	2 cut(s)	174, 353
Hpy188III	TCNNGA	3 cut(s)	178, 215, 296
HpyCH4III	ACNGT	2 cut(s)	79, 127
HpyCH4V	TGCA	4 cut(s)	58, 115, 260, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	41, 269, 282
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	133, 174, 273
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	2 cut(s)	23, 305
LpnPI	CCDG	3 cut(s)	56, 83, 228
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	124, 208
MaeIII	GTNAC	2 cut(s)	137, 230
MalI	GATC	3 cut(s)	135, 176, 275
MboI	GATC	3 cut(s)	133, 174, 273
MboII	GAAGA	2 cut(s)	37, 140
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	95, 235
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	76
Mph1103I	ATGCAT	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	3 cut(s)	133, 174, 273
NlaIII	CATG	3 cut(s)	41, 269, 282
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	137, 230
NsiI	ATGCAT	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	125
PciSI	GCTCTTC	2 cut(s)	50, 153
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	163, 259
PleI	GAGTC	2 cut(s)	95, 235
PpsI	GAGTC	2 cut(s)	95, 235
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	2 cut(s)	50, 153
SatI	GCNGC	2 cut(s)	162, 258
Sau3AI	GATC	3 cut(s)	133, 174, 273
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	95, 235
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	72, 240, 294, 333
SfaNI	GCATC	2 cut(s)	124, 208
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	21, 162, 245
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	79, 127
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	137, 230
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	137, 230
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.