Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Forward (+)

36444409 .. 36445417

Gene Structure 1009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCGGCCGAATTCTCCCACCACGACCCCACTGTCGCCCGAATCAACAACGGCAGCTTCGAGTCCTGCCCCGACTCCGTCCTCTAGGCCCAGCGCCCCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCTCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCAACGAGGTCTCCATCGTCGACAACGCCACCACCGCAGCCGCCATCATCCTCCAGCAAGCCGTCTGGGGCTTCTCCGAGAGCAACTCCGCATTTGATGGGTTTCTTTCTTAAGTTGTTTGTATGGATTGTTGAGGTCCCCATTATTCGTTCTTTGATAATCTCAGTGTTGAAGAAGCAGAATAAGATGACTCAGTTATTGAGGAACACTGTGATTCCAGAAGCACCCATGTTCAAACCTGAATTTCCTCCTCAAGAACCAGAAACCGGGGTTGTTGTTGTGGATGAGGATGGAAAACCAGAAGACAGAGTTGGAGTGGCCTTGAAATGTCTTCCAAACTATGATCCTGCTACCTGTTTGTTCGAAACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

214

Amino Acids

22.34

Weight (kDa)

9.59

Isoelectric Point (pI)

83.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	67, 305, 311, 359
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	73, 512
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	246, 536
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	204, 442, 505, 595
AjiI	CACGTC	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	4 cut(s)	28, 60, 564, 596
AluBI	AGCT	2 cut(s)	119, 168
AluI	AGCT	2 cut(s)	119, 168
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	3 cut(s)	68, 149, 588
ApeKI	GCWGC	3 cut(s)	116, 165, 307
ApoI	RAATTY	2 cut(s)	73, 512
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	150, 249, 406
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	2 cut(s)	249, 406
BbsI	GAAGAC	2 cut(s)	579, 593
BbvI	GCAGC	3 cut(s)	128, 177, 319
BccI	CCATC	4 cut(s)	292, 322, 361, 554
BceAI	ACGGC	2 cut(s)	129, 316
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	380
BisI	GCNGC	5 cut(s)	68, 117, 166, 308, 311
BlsI	GCNGC	5 cut(s)	69, 118, 167, 309, 312
Bme1390I	CCNGG	2 cut(s)	162, 538
Bme18I	GGWCC	2 cut(s)	249, 406
BmgBI	CACGTC	1 cut(s)	270
BmgT120I	GGNCC	3 cut(s)	150, 249, 406
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	162, 538
BmsI	GCATC	1 cut(s)	230
BpiI	GAAGAC	2 cut(s)	579, 593
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	154, 507
BpuMI	CCSGG	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	160, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 536
Bse118I	RCCGGY	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 537
BseGI	GGATG	4 cut(s)	224, 317, 559, 565
BseLI	CCNNNNNNNGG	2 cut(s)	246, 536
BseMII	CTCAG	2 cut(s)	447, 476
BseRI	GAGGAG	1 cut(s)	510
BseX3I	CGGCCG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	128, 177, 319
BseYI	CCCAGC	2 cut(s)	152, 182
Bsh1236I	CGCG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	70, 151, 590
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	218, 537
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	246, 536
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	70, 151, 590
Bso31I	GGTCTC	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	189, 613
BspACI	CCGC	4 cut(s)	67, 305, 311, 359
BspANI	GGCC	3 cut(s)	70, 151, 590
BspCNI	CTCAG	2 cut(s)	446, 475
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	160, 537
BssMI	GATC	2 cut(s)	189, 613
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	96, 481, 640
BstAFI	CTTAAG	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	219, 329
BstDEI	CTNAG	2 cut(s)	433, 462
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	4 cut(s)	224, 317, 559, 565
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	192, 616
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	189, 613
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 304
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	160, 536
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	128, 177, 319
BstV2I	GAAGAC	2 cut(s)	579, 593
BstZI	CGGCCG	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	70, 151, 590
BtrI	CACGTC	1 cut(s)	270
BtsCI	GGATG	4 cut(s)	224, 317, 559, 565
BtsIMutI	CAGTG	3 cut(s)	92, 441, 477
Cac8I	GCNNGC	2 cut(s)	219, 329
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	150, 249, 406
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	433, 462
DpnI	GATC	2 cut(s)	191, 615
DpnII	GATC	2 cut(s)	189, 613
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	249, 406
Eco52I	CGGCCG	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO109I	RGGNCCY	2 cut(s)	249, 406
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	502
FaiI	YATR	3 cut(s)	394, 500, 612
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	5 cut(s)	68, 117, 166, 308, 311
FokI	GGATG	4 cut(s)	211, 304, 566, 572
Fsp4HI	GCNGC	5 cut(s)	68, 117, 166, 308, 311
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	68, 117, 166, 308, 311
GsaI	CCCAGC	2 cut(s)	156, 186
GsuI	CTGGAG	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	70, 151, 590
HapII	CCGG	2 cut(s)	218, 537
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	273, 291
HindII	GTYRAC	2 cut(s)	273, 291
HinfI	GANTC	6 cut(s)	7, 104, 124, 136, 460, 484
HpaII	CCGG	2 cut(s)	218, 537
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	273, 291
Hpy188I	TCNGA	2 cut(s)	60, 348
Hpy188III	TCNNGA	2 cut(s)	488, 524
Hpy8I	GTNNAC	2 cut(s)	273, 291
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	3 cut(s)	96, 481, 640
HpyCH4IV	ACGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 304
HpyF3I	CTNAG	2 cut(s)	433, 462
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	1 cut(s)	156
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	189, 613
Lsp1109I	GCAGC	3 cut(s)	128, 177, 319
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	269
MalI	GATC	2 cut(s)	191, 615
MboI	GATC	2 cut(s)	189, 613
MboII	GAAGA	3 cut(s)	454, 584, 593
MluCI	AATT	2 cut(s)	73, 512
MlyI	GAGTC	3 cut(s)	130, 133, 454
MmeI	TCCRAC	2 cut(s)	35, 562
MroNI	GCCGGC	1 cut(s)	217
MseI	TTAA	2 cut(s)	381, 643
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	218, 537
MspR9I	CCNGG	2 cut(s)	162, 538
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	162, 304
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	189, 613
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 266
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	7, 104, 484
PflFI	GACNNNGTC	2 cut(s)	139, 268
PkrI	GCNGC	5 cut(s)	69, 118, 167, 309, 312
PleI	GAGTC	3 cut(s)	130, 132, 454
PpsI	GAGTC	3 cut(s)	130, 132, 454
PpuMI	RGGWCCY	2 cut(s)	249, 406
Psp5II	RGGWCCY	2 cut(s)	249, 406
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	2 cut(s)	152, 182
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	150, 249, 406
PspPPI	RGGWCCY	2 cut(s)	249, 406
PsyI	GACNNNGTC	2 cut(s)	139, 268
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	381, 643
SatI	GCNGC	5 cut(s)	68, 117, 166, 308, 311
Sau3AI	GATC	2 cut(s)	189, 613
Sau96I	GGNCC	3 cut(s)	150, 249, 406
SchI	GAGTC	3 cut(s)	130, 133, 454
ScrFI	CCNGG	2 cut(s)	162, 538
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	2 cut(s)	249, 406
SmlI	CTYRAG	3 cut(s)	169, 380, 522
SmoI	CTYRAG	3 cut(s)	169, 380, 522
Sse9I	AATT	2 cut(s)	73, 512
SsiI	CCGC	4 cut(s)	67, 305, 311, 359
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	160, 536
TaaI	ACNGT	3 cut(s)	96, 481, 640
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	3 cut(s)	122, 290, 633
TasI	AATT	2 cut(s)	73, 512
TauI	GCSGC	2 cut(s)	70, 313
TfiI	GAWTC	3 cut(s)	7, 104, 484
Tru1I	TTAA	2 cut(s)	381, 643
Tru9I	TTAA	2 cut(s)	381, 643
TscAI	CASTG	3 cut(s)	99, 441, 484
TseI	GCWGC	3 cut(s)	116, 165, 307
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	3 cut(s)	99, 441, 484
Tth111I	GACNNNGTC	2 cut(s)	139, 268
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	249, 406
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	73, 512
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.