Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019734.1

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Reverse (-)

23859 .. 24065

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019734.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgggtcagggactgagttgcggagcgagtgacgagcatgggctcttcagcgccgtgcaacttggggacctggagacggtggaggctttggtagagagagactcggctatcttgcgtcacaccaccgtgtatgatcgtcactctgctcttcatattgctgccgctaatggccagatcgaggtgggttcttccttctgttttcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

68

Amino Acids

7.25

Weight (kDa)

5.04

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 162
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	76, 178
AjnI	CCWGG	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	68, 93
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	68, 93
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 178
BseBI	CCWGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	76, 178
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	2 cut(s)	76, 178
BsmAI	GTCTC	2 cut(s)	68, 93
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	24, 80
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	133, 174
BspACI	CCGC	2 cut(s)	21, 162
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	68
BspQI	GCTCTTC	2 cut(s)	50, 153
BssMI	GATC	2 cut(s)	133, 174
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	79, 127
Bst6I	CTCTTC	2 cut(s)	50, 153
BstDEI	CTNAG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	136, 177
BstMAI	GTCTC	2 cut(s)	68, 93
BstMBI	GATC	2 cut(s)	133, 174
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	104
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	43, 86, 107, 171
CviKI_1	RGCY	4 cut(s)	43, 86, 107, 171
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	135, 176
DpnII	GATC	2 cut(s)	133, 174
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	41
FaiI	YATR	3 cut(s)	39, 132, 153
FaqI	GGGAC	2 cut(s)	24, 80
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	159, 162
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	159, 162
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	159, 162
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	79, 127
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	133, 174
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	56, 83, 185
Lsp1109I	GCAGC	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	29, 116, 137
MalI	GATC	2 cut(s)	135, 176
MboI	GATC	2 cut(s)	133, 174
MboII	GAAGA	3 cut(s)	37, 140, 180
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	76, 172
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
NdeII	GATC	2 cut(s)	133, 174
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	3 cut(s)	29, 116, 137
OliI	CACNNNNGTG	1 cut(s)	125
PciSI	GCTCTTC	2 cut(s)	50, 153
PkrI	GCNGC	2 cut(s)	160, 163
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	2 cut(s)	50, 153
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	2 cut(s)	133, 174
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	2 cut(s)	72, 183
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	2 cut(s)	21, 162
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	79, 127
TaqI	TCGA	1 cut(s)	177
TauI	GCSGC	1 cut(s)	164
TseFI	GTSAC	3 cut(s)	29, 116, 137
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	3 cut(s)	29, 116, 137
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.