pycom15g31830

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015551
Physical Location & Seq
Reverse (-)
30600181 .. 30601341
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31830.2

Sequence Viewer

Length: 774 bp
ATGTCTTCCTCAGCCATGGCTACCTCTAATAAACCAAAAACCCAAAGAAAACCCACCAAGCAAACACATCAAAAGCTTCAAAAGCACCATGAGAACAAGAACCCGAAGCCCCAAAAGGCGGAGAAGAACCCGGCGGAGAAGCCGCCTTACTGGTCAGTTGTGAGAGGCCTACTGACCTGCAAACACCTCCAACCGGTTCAGCTACCACAAAAGCAACCAAATGAGCAACAAGCCATGGAGGAAGCTAACAATGCAGCCAAGAAATGCAAGAAAATGAGATGTTCCGGCTCGTTGTGTAACAACACAAAAATAATGCAGAGGCCGGAAATGTTAGCATCTCCAGAAGTCCATAAGAAAAGGGCTTCTTCTTCAATGGGTTTTTCAGGCCACAGCAATGAGACTTCAAGCAGATCCATGAAAGCTCCACTCCATGAAATCAATGGGGTTGTTTCCACATCTTCTTCTTCGTTTTCTGCAGTTTCTTCTTCTAATAATTCTTCTTCTGCTGCTGGCGGCGGGTCGTTTAGAGCAATGCCGTTTCGGCGATTTTCGGGTTGTTATGAGTGCAGGATGGTGGTTGATCCTGTTCTTGGGTTTGCTAGAGACCCTTCTCTGAGGGGGAGCATCTGTCCTTGTCCGGAATGTGGTGAGATTTTCATGAAAGCTGAGAACTTGGAGCTTCATCAGGCTGTTAGACATGCAGTTTCTGAATTGGGTCCTGAAGACACAAGCAAGAACATAGTGGATCGATCATATTCCAGTCCAGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.12

Weight (kDa)

9.62

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015551)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26340
malus_domestica MD08G1169800.v1.1 MD15G1356300.v1.1
prunus_persica Prupe.1G503600_v2.0.a1
pyrus_communis pycom08g14520 pycom15g31830
rosa_chinensis RchiOBHm_Chr6g0294921
rosa_laevigata RLG00000011827
rosa_multiflora Rmu_sc0002700.1_g000047
rosa_roxburghii Rroxscaffold_7G00172840
rosa_rugosa Rorug06G0248300
rosa_samantha Rh6AG361500 Rh6BG368900 Rh6CG375500 Rh6DG361900
rosa_wichuraiana Rw6G031520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 5 cut(s) 119, 134, 143, 513, 516
AclWI GGATC 3 cut(s) 405, 575, 753
AcuI CTGAAG 1 cut(s) 741
AfiI CCNNNNNNNGG 4 cut(s) 118, 193, 590, 644
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 3 cut(s) 80, 372, 405
AluBI AGCT 7 cut(s) 76, 202, 245, 422, 665, 679, 767
AluI AGCT 7 cut(s) 76, 202, 245, 422, 665, 679, 767
Alw26I GTCTC 2 cut(s) 392, 597
AlwI GGATC 3 cut(s) 405, 575, 753
AlwNI CAGNNNCTG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 3 cut(s) 166, 320, 385
ApeKI GCWGC 2 cut(s) 254, 506
AsiGI ACCGGT 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 716
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BbsI GAAGAC 1 cut(s) 729
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 266, 493
BccI CCATC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 520
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 392, 597
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 541
BisI GCNGC 4 cut(s) 143, 255, 507, 514
BlsI GCNGC 4 cut(s) 144, 256, 508, 515
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 344, 633
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 15, 234
BsaWI WCCGGW 2 cut(s) 193, 637
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 193, 590, 644
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 155, 759
Bse3DI GCAATG 2 cut(s) 400, 537
BseAI TCCGGA 1 cut(s) 637
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 2 cut(s) 15, 234
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 4 cut(s) 118, 193, 590, 644
BseMI GCAATG 2 cut(s) 400, 537
BseMII CTCAG 3 cut(s) 24, 605, 657
BseNI ACTGG 2 cut(s) 155, 759
BseXI GCAGC 2 cut(s) 266, 493
BsgI GTGCAG 1 cut(s) 586
BshFI GGCC 3 cut(s) 168, 322, 387
BshTI ACCGGT 1 cut(s) 193
BshVI ATCGAT 1 cut(s) 748
BsiSI CCGG 5 cut(s) 131, 194, 285, 323, 638
BslI CCNNNNNNNGG 4 cut(s) 118, 193, 590, 644
BsmAI GTCTC 2 cut(s) 392, 597
BsnI GGCC 3 cut(s) 168, 322, 387
Bso31I GGTCTC 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 4 cut(s) 410, 580, 745, 749
Bsp19I CCATGG 2 cut(s) 15, 234
BspACI CCGC 5 cut(s) 119, 134, 143, 513, 516
BspANI GGCC 3 cut(s) 168, 322, 387
BspCNI CTCAG 3 cut(s) 23, 606, 658
BspDI ATCGAT 1 cut(s) 748
BspEI TCCGGA 1 cut(s) 637
BspHI TCATGA 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 405, 575, 753
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 400, 537
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 2 cut(s) 155, 759
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 15, 234
BssMI GATC 4 cut(s) 410, 580, 745, 749
BssT1I CCWWGG 2 cut(s) 15, 234
BstC8I GCNNGC 2 cut(s) 511, 769
BstDEI CTNAG 3 cut(s) 10, 614, 666
BstDSI CCRYGG 2 cut(s) 15, 234
BstF5I GGATG 1 cut(s) 576
BstKTI GATC 4 cut(s) 413, 583, 748, 752
BstMAI GTCTC 2 cut(s) 392, 597
BstMBI GATC 4 cut(s) 410, 580, 745, 749
BstMWI GCNNNNNNNGC 3 cut(s) 82, 251, 541
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 266, 493
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 748
BsuRI GGCC 3 cut(s) 168, 322, 387
BsuTUI ATCGAT 1 cut(s) 748
BtgI CCRYGG 2 cut(s) 15, 234
BtsCI GGATG 1 cut(s) 576
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 511, 769
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 657
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 748
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 7 cut(s) 16, 89, 235, 415, 431, 658, 698
DdeI CTNAG 3 cut(s) 10, 614, 666
DpnI GATC 4 cut(s) 412, 582, 747, 751
DpnII GATC 4 cut(s) 410, 580, 745, 749
EciI GGCGGA 2 cut(s) 134, 149
Eco130I CCWWGG 2 cut(s) 15, 234
Eco147I AGGCCT 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 15, 234
ErhI CCWWGG 2 cut(s) 15, 234
FaeI CATG 7 cut(s) 19, 92, 238, 418, 434, 661, 701
FalI AAGNNNNNCTT 2 cut(s) 349, 381
FatI CATG 7 cut(s) 15, 88, 234, 414, 430, 657, 697
FauI CCCGC 1 cut(s) 509
Fnu4HI GCNGC 4 cut(s) 143, 255, 507, 514
FokI GGATG 1 cut(s) 583
Fsp4HI GCNGC 4 cut(s) 143, 255, 507, 514
FspBI CTAG 1 cut(s) 600
GluI GCNGC 4 cut(s) 143, 255, 507, 514
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 168, 322, 387
HapII CCGG 5 cut(s) 131, 194, 285, 323, 638
Hin1II CATG 7 cut(s) 19, 92, 238, 418, 434, 661, 701
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 5 cut(s) 131, 194, 285, 323, 638
HphI GGTGA 1 cut(s) 659
Hpy188I TCNGA 2 cut(s) 615, 709
Hpy188III TCNNGA 4 cut(s) 341, 638, 658, 719
HpyAV CCTTC 1 cut(s) 618
HpyCH4V TGCA 7 cut(s) 180, 254, 267, 316, 476, 567, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 251, 541
HpyF3I CTNAG 3 cut(s) 10, 614, 666
Hsp92II CATG 7 cut(s) 19, 92, 238, 418, 434, 661, 701
Kpn2I TCCGGA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 410, 580, 745, 749
LmnI GCTCC 3 cut(s) 427, 621, 676
Lsp1109I GCAGC 2 cut(s) 266, 493
LweI GCATC 2 cut(s) 344, 633
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 412, 582, 747, 751
MboI GATC 4 cut(s) 410, 580, 745, 749
MflI RGATCY 1 cut(s) 410
MluCI AATT 2 cut(s) 493, 710
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 7 cut(s) 19, 34, 158, 197, 232, 312, 609
MroI TCCGGA 1 cut(s) 637
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 5 cut(s) 131, 194, 285, 323, 638
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 82, 251, 541
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 2 cut(s) 15, 234
NdeII GATC 4 cut(s) 410, 580, 745, 749
NlaIII CATG 7 cut(s) 19, 92, 238, 418, 434, 661, 701
NlaIV GGNNCC 1 cut(s) 717
NspI RCATGY 1 cut(s) 701
PagI TCATGA 1 cut(s) 657
PceI AGGCCT 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 4 cut(s) 144, 256, 508, 515
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 1 cut(s) 716
PspPPI RGGWCCY 1 cut(s) 716
PstI CTGCAG 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 393
SatI GCNGC 4 cut(s) 143, 255, 507, 514
Sau3AI GATC 4 cut(s) 410, 580, 745, 749
Sau96I GGNCC 1 cut(s) 716
ScrFI CCNGG 1 cut(s) 131
SfaNI GCATC 2 cut(s) 344, 633
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 493, 710
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 5 cut(s) 119, 134, 143, 513, 516
SspMI CTAG 1 cut(s) 600
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 15, 234
TaqI TCGA 1 cut(s) 748
TasI AATT 2 cut(s) 493, 710
TauI GCSGC 2 cut(s) 145, 516
TseI GCWGC 2 cut(s) 254, 506
TspDTI ATGAA 5 cut(s) 431, 447, 646, 671, 674
VpaK11BI GGWCC 1 cut(s) 716
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.