RLG00000011827

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015551
Physical Location & Seq
Reverse (-)
13100078 .. 13101634
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011827

Sequence Viewer

Length: 1344 bp
ATGTCTACAACAATGGCCAAACTCAAAAGCCAAAGAAAACCCACCAAGCCAACCCACCAAAAGAGCAAGAAACAGAATCAAAACCAGAACCAGAATCCCCAAAAGCCAGAGATCAAACCACCCTATTGGGCAGTTGTAAGAGGCTTACTGACTTGCAAACATCACCAAGCAGTTCAGCTACTACATCAAGAAGGTAAACATCACCCACAGAAACAACAAAATGAGCAACTAGCATCCATGGAGGAAATGAGTGCTGCCAAGAAATGCAAGAAGATGAGATGCTCTGGCTCATTGTGCAGCAACACAAAAATCACACACAGGCCCGAGCTAGGATCTCCTGAAGTCCATAAGAAAAGGGCTTCTTCAATGGGCTCCTCAAGCAGCACAAATGAAAATTCAAGCAGATCCTTGAAGGCTCCTCTGCATGAGCTCAATGGAGTTGTCTCTACCTCTTCTTCTTCACTCTCTGCATCTTCAAACATCTCCTCTGCTGGTGGTTCCTTCAGAGCAATGCCTTTTAGAAGGTTCTCAGGCTGCTATGAGTGTAGAATGGTGGTTGACCCTGTTCTTGGTTTCGCCAGAGACCCTTCTCTCAGGGGAAGCATTTGCTCATGCCCTGAATGTGGAGCCATTTTCATGAAAGCCGAAAACCTGGAGCTCCATCAAGCTGTTAGGCATGCAGTTTCCGAGCTGGGTCCAGAGGACACGAGCAAGAACATAGTGGAGATCATTTTCCAATCCAGCTGGCTCAAGAAACAAGCTCCGATTTGCAAGATCGATCGCATCCTCAAAGTCCACAACACACAGAAAACCATCTCCAAATTTGAAGAGTACCGAGACTCCATCAAAGCAAAAGCCACCAAGCTGCAGCTCCCGAACAAGAAACACCCACGTTGCATTGCCGACGGCAACGAGCTCCTCCGGTTCCACTGCACCACTTTCGACTGCTCTTTGGGCCTTAACGGCTCCTCCAACCTCTGCAACTCCATCCCAAGCTGCAACGTCTGCAGCATAATCAAGAACGGGTTTAAAGTTGATAGGAGTGAGTTGGCCGGAAGTAATGGGATTCTGACGACGGCGACGAGCGGGAGGGCCCATGACATGGCTGCAGTGGCGGCAGAGGACGGCCGGAGGGCTATGCTGGTGTGTCGAGTGATAGCGGGGCGAGTGAAGAAAAATGTAGATGGACAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGTGGAAGAGTACGACTCGGTGGCCGGAGCAGTGGGGGTGTATTCGAATTTGGATGAGTTGTATGTGTTTAATCCCAAGGCTATTTTGCCTTGTTTTGTTGTCATATATGGAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

48.5

Weight (kDa)

9.44

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015551)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26340
malus_domestica MD08G1169800.v1.1 MD15G1356300.v1.1
prunus_persica Prupe.1G503600_v2.0.a1
pyrus_communis pycom08g14520 pycom15g31830
rosa_chinensis RchiOBHm_Chr6g0294921
rosa_laevigata RLG00000011827
rosa_multiflora Rmu_sc0002700.1_g000047
rosa_roxburghii Rroxscaffold_7G00172840
rosa_rugosa Rorug06G0248300
rosa_samantha Rh6AG361500 Rh6BG368900 Rh6CG375500 Rh6DG361900
rosa_wichuraiana Rw6G031520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1102
AccBSI CCGCTC 1 cut(s) 1086
AccI GTMKAC 1 cut(s) 5
AciI CCGC 4 cut(s) 1086, 1115, 1160, 1223
AclWI GGATC 2 cut(s) 340, 399
AcoI YGGCCR 4 cut(s) 15, 1050, 1126, 1245
AcsI RAATTY 3 cut(s) 394, 821, 1270
AcuI CTGAAG 2 cut(s) 360, 487
AfaI GTAC 2 cut(s) 833, 1235
AfiI CCNNNNNNNGG 4 cut(s) 329, 569, 623, 1102
AgsI TTSAA 5 cut(s) 366, 399, 412, 477, 827
AjnI CCWGG 1 cut(s) 651
Alw21I GWGCWC 3 cut(s) 432, 660, 918
Alw26I GTCTC 3 cut(s) 448, 576, 831
AlwI GGATC 2 cut(s) 340, 399
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 7 cut(s) 15, 320, 955, 1050, 1092, 1126, 1245
ApaI GGGCCC 1 cut(s) 1096
ApeKI GCWGC 9 cut(s) 254, 297, 381, 534, 865, 868, 996, 1008, 1106
ApoI RAATTY 3 cut(s) 394, 821, 1270
AspS9I GGNCC 5 cut(s) 321, 695, 955, 1092, 1093
AsuHPI GGTGA 2 cut(s) 155, 194
AsuII TTCGAA 1 cut(s) 1268
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 695
BaeGI GKGCMC 1 cut(s) 1096
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 5 cut(s) 374, 432, 660, 918, 1096
BauI CACGAG 1 cut(s) 706
Bbv12I GWGCWC 3 cut(s) 432, 660, 918
BbvI GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1093
BccI CCATC 5 cut(s) 669, 821, 851, 995, 1178
BceAI ACGGC 4 cut(s) 922, 979, 1092, 1141
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 3 cut(s) 448, 576, 831
BfaI CTAG 2 cut(s) 230, 329
BfmI CTRYAG 3 cut(s) 866, 1006, 1107
BglI GCCNNNNNGGC 1 cut(s) 963
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 1 cut(s) 695
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 5 cut(s) 321, 695, 955, 1092, 1093
BmiI GGNNCC 8 cut(s) 373, 417, 499, 628, 696, 926, 967, 1094
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 4 cut(s) 242, 269, 479, 792
BplI GAGNNNNNCTC 2 cut(s) 1223, 1255
BpmI CTGGAG 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 1268
BpuEI CTTGAG 2 cut(s) 361, 734
Bsa29I ATCGAT 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 237, 1299
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 953, 983
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 569, 623, 1102
Bse3DI GCAATG 2 cut(s) 516, 897
BseBI CCWGG 1 cut(s) 653
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 237, 1299
BseGI GGATG 4 cut(s) 233, 783, 987, 1282
BseLI CCNNNNNNNGG 4 cut(s) 329, 569, 623, 1102
BseMI GCAATG 2 cut(s) 516, 897
BseMII CTCAG 2 cut(s) 543, 607
BseRI GAGGAG 5 cut(s) 364, 408, 475, 908, 958
BseSI GKGCMC 1 cut(s) 1096
BseX3I CGGCCG 1 cut(s) 1126
BseXI GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1093
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 2 cut(s) 316, 916
Bsh1285I CGRYCG 2 cut(s) 781, 1129
BshFI GGCC 7 cut(s) 17, 322, 957, 1052, 1094, 1128, 1247
BshVI ATCGAT 1 cut(s) 777
BsiEI CGRYCG 2 cut(s) 781, 1129
BsiHKAI GWGCWC 3 cut(s) 432, 660, 918
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 4 cut(s) 922, 1053, 1129, 1248
BslI CCNNNNNNNGG 4 cut(s) 329, 569, 623, 1102
BsmAI GTCTC 3 cut(s) 448, 576, 831
BsnI GGCC 7 cut(s) 17, 322, 957, 1052, 1094, 1128, 1247
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 1268
Bsp120I GGGCCC 1 cut(s) 1092
Bsp1286I GDGCHC 5 cut(s) 374, 432, 660, 918, 1096
Bsp143I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 4 cut(s) 1086, 1115, 1160, 1223
BspANI GGCC 7 cut(s) 17, 322, 957, 1052, 1094, 1128, 1247
BspCNI CTCAG 2 cut(s) 542, 606
BspDI ATCGAT 1 cut(s) 777
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 8 cut(s) 373, 417, 499, 628, 696, 926, 967, 1094
BspMAI CTGCAG 3 cut(s) 870, 1010, 1111
BspPI GGATC 2 cut(s) 340, 399
BspT104I TTCGAA 1 cut(s) 1268
BspTNI GGTCTC 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 1086
BsrDI GCAATG 2 cut(s) 516, 897
BssECI CCNNGG 2 cut(s) 237, 1299
BssMI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BssSI CACGAG 1 cut(s) 706
BssT1I CCWWGG 2 cut(s) 237, 1299
Bst2BI CACGAG 1 cut(s) 706
Bst2UI CCWGG 1 cut(s) 653
Bst6I CTCTTC 3 cut(s) 457, 822, 1224
BstAPI GCANNNNNTGC 1 cut(s) 1005
BstBI TTCGAA 1 cut(s) 1268
BstC8I GCNNGC 2 cut(s) 678, 746
BstDEI CTNAG 2 cut(s) 529, 593
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 233, 783, 987, 1282
BstKTI GATC 6 cut(s) 114, 335, 407, 729, 777, 781
BstMAI GTCTC 3 cut(s) 448, 576, 831
BstMBI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BstMCI CGRYCG 2 cut(s) 781, 1129
BstMWI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 3 cut(s) 866, 1006, 1107
BstSLI GKGCMC 1 cut(s) 1096
BstV1I GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1093
BstX2I RGATCY 2 cut(s) 332, 404
BstXI CCANNNNNNTGG 1 cut(s) 126
BstYI RGATCY 2 cut(s) 332, 404
BstZI CGGCCG 1 cut(s) 1126
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 7 cut(s) 17, 322, 957, 1052, 1094, 1128, 1247
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 4 cut(s) 233, 783, 987, 1282
BtsI GCAGTG 3 cut(s) 928, 1116, 1260
BtsIMutI CAGTG 3 cut(s) 928, 1116, 1260
Cac8I GCNNGC 2 cut(s) 678, 746
CciI TCATGA 1 cut(s) 636
Cfr13I GGNCC 5 cut(s) 321, 695, 955, 1092, 1093
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 2 cut(s) 832, 1234
CviAII CATG 7 cut(s) 238, 425, 612, 637, 677, 1097, 1102
CviQI GTAC 2 cut(s) 832, 1234
DdeI CTNAG 2 cut(s) 529, 593
DpnI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
DpnII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 4 cut(s) 15, 1050, 1126, 1245
EagI CGGCCG 1 cut(s) 1126
Eam1104I CTCTTC 3 cut(s) 457, 822, 1224
EarI CTCTTC 3 cut(s) 457, 822, 1224
Ecl136II GAGCTC 3 cut(s) 430, 658, 916
EclXI CGGCCG 1 cut(s) 1126
Eco130I CCWWGG 2 cut(s) 237, 1299
Eco24I GRGCYC 5 cut(s) 374, 432, 660, 918, 1096
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 695
Eco52I CGGCCG 1 cut(s) 1126
Eco53kI GAGCTC 3 cut(s) 430, 658, 916
Eco57I CTGAAG 2 cut(s) 360, 487
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 3 cut(s) 430, 658, 916
EcoO109I RGGNCCY 1 cut(s) 1092
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 237, 1299
EcoT38I GRGCYC 5 cut(s) 374, 432, 660, 918, 1096
ErhI CCWWGG 2 cut(s) 237, 1299
FaeI CATG 7 cut(s) 241, 428, 615, 640, 680, 1100, 1105
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 7 cut(s) 237, 424, 611, 636, 676, 1096, 1101
FauI CCCGC 2 cut(s) 1079, 1153
FblI GTMKAC 1 cut(s) 5
FokI GGATG 4 cut(s) 220, 770, 974, 1289
FriOI GRGCYC 5 cut(s) 374, 432, 660, 918, 1096
FspBI CTAG 2 cut(s) 230, 329
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 7 cut(s) 17, 322, 957, 1052, 1094, 1128, 1247
HapII CCGG 4 cut(s) 922, 1053, 1129, 1248
Hin1II CATG 7 cut(s) 241, 428, 615, 640, 680, 1100, 1105
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 5 cut(s) 76, 94, 839, 1066, 1238
HpaII CCGG 4 cut(s) 922, 1053, 1129, 1248
HphI GGTGA 2 cut(s) 155, 194
Hpy166II GTNNAC 4 cut(s) 6, 197, 559, 796
Hpy188I TCNGA 4 cut(s) 506, 688, 765, 1071
Hpy188III TCNNGA 7 cut(s) 188, 338, 637, 698, 751, 874, 1018
Hpy8I GTNNAC 4 cut(s) 6, 197, 559, 796
Hpy99I CGWCG 3 cut(s) 908, 1078, 1084
HpyAV CCTTC 5 cut(s) 185, 406, 511, 516, 597
HpyCH4IV ACGT 2 cut(s) 892, 1002
HpyF10VI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
HpyF3I CTNAG 2 cut(s) 529, 593
HpySE526I ACGT 2 cut(s) 892, 1002
Hsp92II CATG 7 cut(s) 241, 428, 615, 640, 680, 1100, 1105
Kzo9I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Lsp1109I GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1093
LweI GCATC 4 cut(s) 242, 269, 479, 792
MaeI CTAG 2 cut(s) 230, 329
MaeII ACGT 2 cut(s) 892, 1002
MalI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
MbiI CCGCTC 1 cut(s) 1086
MboI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
MboII GAAGA 9 cut(s) 283, 354, 444, 447, 450, 465, 839, 1183, 1241
MflI RGATCY 2 cut(s) 332, 404
MhlI GDGCHC 5 cut(s) 374, 432, 660, 918, 1096
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 3 cut(s) 394, 821, 1270
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 833, 1232
MmeI TCCRAC 1 cut(s) 996
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 960, 1029, 1293
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 4 cut(s) 922, 1053, 1129, 1248
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
NcoI CCATGG 1 cut(s) 237
NdeII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
NlaIII CATG 7 cut(s) 241, 428, 615, 640, 680, 1100, 1105
NlaIV GGNNCC 8 cut(s) 373, 417, 499, 628, 696, 926, 967, 1094
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 1268
PaeI GCATGC 1 cut(s) 680
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 76, 94, 1066
PflMI CCANNNNNTGG 1 cut(s) 1102
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 833, 1232
PpsI GAGTC 2 cut(s) 833, 1232
Psp124BI GAGCTC 3 cut(s) 432, 660, 918
Psp6I CCWGG 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 8 cut(s) 373, 417, 499, 628, 696, 926, 967, 1094
PspOMI GGGCCC 1 cut(s) 1092
PspPI GGNCC 5 cut(s) 321, 695, 955, 1092, 1093
PstI CTGCAG 3 cut(s) 870, 1010, 1111
PsuI RGATCY 2 cut(s) 332, 404
PvuI CGATCG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 744
RsaI GTAC 2 cut(s) 833, 1235
RsaNI GTAC 2 cut(s) 832, 1234
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 3 cut(s) 432, 660, 918
SaqAI TTAA 3 cut(s) 960, 1029, 1293
Sau3AI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Sau96I GGNCC 5 cut(s) 321, 695, 955, 1092, 1093
SchI GAGTC 2 cut(s) 833, 1232
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 5 cut(s) 374, 432, 660, 918, 1096
SfaNI GCATC 4 cut(s) 242, 269, 479, 792
SfcI CTRYAG 3 cut(s) 866, 1006, 1107
SfuI TTCGAA 1 cut(s) 1268
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 376, 749
SmoI CTYRAG 2 cut(s) 376, 749
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 394, 821, 1270
SsiI CCGC 4 cut(s) 1086, 1115, 1160, 1223
SspMI CTAG 2 cut(s) 230, 329
SstI GAGCTC 3 cut(s) 432, 660, 918
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 2 cut(s) 237, 1299
TaiI ACGT 2 cut(s) 895, 1005
TaqI TCGA 4 cut(s) 777, 942, 1150, 1268
TasI AATT 3 cut(s) 394, 821, 1270
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 3 cut(s) 76, 94, 1066
Tru1I TTAA 3 cut(s) 960, 1029, 1293
Tru9I TTAA 3 cut(s) 960, 1029, 1293
TscAI CASTG 3 cut(s) 935, 1116, 1260
TseI GCWGC 9 cut(s) 254, 297, 381, 534, 865, 868, 996, 1008, 1106
TspDTI ATGAA 3 cut(s) 405, 625, 653
TspRI CASTG 3 cut(s) 935, 1116, 1260
Van91I CCANNNNNTGG 1 cut(s) 1102
VpaK11BI GGWCC 1 cut(s) 695
XapI RAATTY 3 cut(s) 394, 821, 1270
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 230, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.