Rmu_sc0002700.1_g000047

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002700.1
OG0015551
Physical Location & Seq
Reverse (-)
229995 .. 231520
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002700.1_g000047.1.cds

Sequence Viewer

Length: 1311 bp
atggccaaactcaaaagccagaaaaaacccaccaagccaacccaccaaaagagcaagaaacagaatcaaaaccagaaccagaatccccaaaagccagagatcaaaccaccctattgggcagttgtaagaggcttactgacttgcaaacatcaccaagcagttcagctactacaacaagaaggtaaacatcacccacagaaacaacaaaatgagcaactagcatccatggaggaaatgagtgctgccaagaaatgcaagaagatgagatgctctggctcattgtgcagcaacacaaaaatcacacacaggcctgagctaggatctcctgaagtccataagaaaagggcttcttcaatgggctcctcaagcagcacaaatgaaacttcaagcagatccatgaaggctcctctgcatgagctcaatggagttgtctctacctcttcttcttcactctctgcatcttcaaacatctcctctgctggtggttccttcagagcaatgccttttagaaggttctcaggctgctatgagtgtagaatggtggttgaccctgttcttggtttcgccagagacccttctctcaggggaagcatttgctcatgccctgaatgtggagccattttcatgaaagccgaaaacctggagctccatcaagctgttaggcatgcagtttccgagctgggtccagaggacacgagcaagaacatagtggagatcatcttccaatccagctggctcaagaaacaagctccgatttgcaagatcgatcgcatcctcaaagtccacaacacacagaaaacaatctccaaattcgaagagtaccgagactccatcaaagccaaggccaccaagctgcagctcccgaacaagaaacacccacgttgcattgccgacggcaacgagctcctccggttccactgcaccaccttcgactgctctttgggccttaacggctcctccaacctctgcaactccatcccaagctgtaacgtctgcagcataatcaagaacgggtttaaagttgataggagtgagttggccggaagtaatgggattctgacgacggcgacgagcgggagggcccatgacatggccgcagtggcggccgaggacggccggatggctatgctggtgtgtcgagtgatagcggggcgagtgaagaaaaatgtggatggacaaggtggtggtgcggtggaagagtacgactcggtggccggagctgtgggggtgtattcgaatttggatgagttgtatgtgtttaatcccaaggctattttgccttgttttgttgtcatatatggagggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

47.63

Weight (kDa)

9.39

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015551)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26340
malus_domestica MD08G1169800.v1.1 MD15G1356300.v1.1
prunus_persica Prupe.1G503600_v2.0.a1
pyrus_communis pycom08g14520 pycom15g31830
rosa_chinensis RchiOBHm_Chr6g0294921
rosa_laevigata RLG00000011827
rosa_multiflora Rmu_sc0002700.1_g000047
rosa_roxburghii Rroxscaffold_7G00172840
rosa_rugosa Rorug06G0248300
rosa_samantha Rh6AG361500 Rh6BG368900 Rh6CG375500 Rh6DG361900
rosa_wichuraiana Rw6G031520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccBSI CCGCTC 1 cut(s) 1074
AciI CCGC 5 cut(s) 1074, 1095, 1103, 1148, 1190
AclWI GGATC 2 cut(s) 328, 387
AcoI YGGCCR 6 cut(s) 3, 1038, 1092, 1104, 1114, 1212
AcsI RAATTY 2 cut(s) 809, 1237
AcuI CTGAAG 2 cut(s) 348, 475
AfaI GTAC 2 cut(s) 821, 1202
AfiI CCNNNNNNNGG 4 cut(s) 317, 557, 611, 1090
AgsI TTSAA 3 cut(s) 354, 387, 465
AjnI CCWGG 1 cut(s) 639
Alw21I GWGCWC 3 cut(s) 420, 648, 906
Alw26I GTCTC 3 cut(s) 436, 564, 819
AlwI GGATC 2 cut(s) 328, 387
ApaI GGGCCC 1 cut(s) 1084
ApeKI GCWGC 7 cut(s) 242, 285, 369, 522, 853, 856, 996
ApoI RAATTY 2 cut(s) 809, 1237
AspS9I GGNCC 4 cut(s) 683, 943, 1080, 1081
AsuHPI GGTGA 2 cut(s) 143, 182
AsuII TTCGAA 2 cut(s) 813, 1235
AvaII GGWCC 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 1084
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 5 cut(s) 362, 420, 648, 906, 1084
BauI CACGAG 1 cut(s) 694
Bbv12I GWGCWC 3 cut(s) 420, 648, 906
BbvI GCAGC 7 cut(s) 229, 297, 381, 509, 840, 868, 1008
BccI CCATC 5 cut(s) 657, 839, 983, 1114, 1166
BceAI ACGGC 4 cut(s) 910, 967, 1080, 1129
BcgI CGANNNNNNTGC 2 cut(s) 910, 944
BciT130I CCWGG 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 436, 564, 819
BfaI CTAG 2 cut(s) 218, 317
BfmI CTRYAG 2 cut(s) 854, 994
BglI GCCNNNNNGGC 2 cut(s) 951, 1100
BisI GCNGC 9 cut(s) 243, 286, 370, 523, 854, 857, 997, 1095, 1104
BlsI GCNGC 9 cut(s) 244, 287, 371, 524, 855, 858, 998, 1096, 1105
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 4 cut(s) 683, 943, 1080, 1081
BmiI GGNNCC 8 cut(s) 361, 405, 487, 616, 684, 914, 955, 1082
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 4 cut(s) 230, 257, 467, 780
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 2 cut(s) 813, 1235
BpuEI CTTGAG 2 cut(s) 349, 722
Bsa29I ATCGAT 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 225, 840, 1107, 1266
BsaWI WCCGGW 1 cut(s) 909
BsaXI ACNNNNNCTCC 4 cut(s) 812, 842, 941, 971
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 557, 611, 1090
Bse3DI GCAATG 2 cut(s) 504, 885
BseBI CCWGG 1 cut(s) 641
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 4 cut(s) 225, 840, 1107, 1266
BseGI GGATG 6 cut(s) 221, 771, 975, 1125, 1177, 1249
BseLI CCNNNNNNNGG 4 cut(s) 317, 557, 611, 1090
BseMI GCAATG 2 cut(s) 504, 885
BseMII CTCAG 3 cut(s) 303, 531, 595
BseRI GAGGAG 5 cut(s) 352, 396, 463, 896, 946
BseSI GKGCMC 1 cut(s) 1084
BseX3I CGGCCG 2 cut(s) 1104, 1114
BseXI GCAGC 7 cut(s) 229, 297, 381, 509, 840, 868, 1008
BseYI CCCAGC 1 cut(s) 679
BsgI GTGCAG 2 cut(s) 304, 904
Bsh1285I CGRYCG 3 cut(s) 769, 1107, 1117
BshVI ATCGAT 1 cut(s) 765
BsiEI CGRYCG 3 cut(s) 769, 1107, 1117
BsiHKAI GWGCWC 3 cut(s) 420, 648, 906
BsiSI CCGG 4 cut(s) 910, 1041, 1117, 1215
BslI CCNNNNNNNGG 4 cut(s) 317, 557, 611, 1090
BsmAI GTCTC 3 cut(s) 436, 564, 819
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 2 cut(s) 813, 1235
Bsp120I GGGCCC 1 cut(s) 1080
Bsp1286I GDGCHC 5 cut(s) 362, 420, 648, 906, 1084
Bsp143I GATC 6 cut(s) 99, 320, 392, 714, 762, 766
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 5 cut(s) 1074, 1095, 1103, 1148, 1190
BspCNI CTCAG 3 cut(s) 304, 530, 594
BspDI ATCGAT 1 cut(s) 765
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 8 cut(s) 361, 405, 487, 616, 684, 914, 955, 1082
BspMAI CTGCAG 2 cut(s) 858, 998
BspPI GGATC 2 cut(s) 328, 387
BspT104I TTCGAA 2 cut(s) 813, 1235
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 1074
BsrDI GCAATG 2 cut(s) 504, 885
BssECI CCNNGG 4 cut(s) 225, 840, 1107, 1266
BssMI GATC 6 cut(s) 99, 320, 392, 714, 762, 766
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 3 cut(s) 225, 840, 1266
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 641
Bst6I CTCTTC 3 cut(s) 445, 810, 1191
BstBI TTCGAA 2 cut(s) 813, 1235
BstC8I GCNNGC 2 cut(s) 666, 734
BstDEI CTNAG 3 cut(s) 312, 517, 581
BstDSI CCRYGG 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 6 cut(s) 221, 771, 975, 1125, 1177, 1249
BstKTI GATC 6 cut(s) 102, 323, 395, 717, 765, 769
BstMAI GTCTC 3 cut(s) 436, 564, 819
BstMBI GATC 6 cut(s) 99, 320, 392, 714, 762, 766
BstMCI CGRYCG 3 cut(s) 769, 1107, 1117
BstMWI GCNNNNNNNGC 6 cut(s) 282, 366, 942, 951, 1100, 1103
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 2 cut(s) 854, 994
BstSLI GKGCMC 1 cut(s) 1084
BstV1I GCAGC 7 cut(s) 229, 297, 381, 509, 840, 868, 1008
BstX2I RGATCY 2 cut(s) 320, 392
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 2 cut(s) 320, 392
BstZI CGGCCG 2 cut(s) 1104, 1114
Bsu15I ATCGAT 1 cut(s) 765
BsuTUI ATCGAT 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 6 cut(s) 221, 771, 975, 1125, 1177, 1249
BtsI GCAGTG 2 cut(s) 916, 1104
BtsIMutI CAGTG 2 cut(s) 916, 1104
Cac8I GCNNGC 2 cut(s) 666, 734
CciI TCATGA 1 cut(s) 624
Cfr13I GGNCC 4 cut(s) 683, 943, 1080, 1081
ClaI ATCGAT 1 cut(s) 765
Csp6I GTAC 2 cut(s) 820, 1201
CviAII CATG 8 cut(s) 226, 397, 413, 600, 625, 665, 1085, 1090
CviQI GTAC 2 cut(s) 820, 1201
DdeI CTNAG 3 cut(s) 312, 517, 581
DpnI GATC 6 cut(s) 101, 322, 394, 716, 764, 768
DpnII GATC 6 cut(s) 99, 320, 392, 714, 762, 766
DraI TTTAAA 1 cut(s) 1018
EaeI YGGCCR 6 cut(s) 3, 1038, 1092, 1104, 1114, 1212
EagI CGGCCG 2 cut(s) 1104, 1114
Eam1104I CTCTTC 3 cut(s) 445, 810, 1191
EarI CTCTTC 3 cut(s) 445, 810, 1191
Ecl136II GAGCTC 3 cut(s) 418, 646, 904
EclXI CGGCCG 2 cut(s) 1104, 1114
Eco130I CCWWGG 3 cut(s) 225, 840, 1266
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 5 cut(s) 362, 420, 648, 906, 1084
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 683
Eco52I CGGCCG 2 cut(s) 1104, 1114
Eco53kI GAGCTC 3 cut(s) 418, 646, 904
Eco57I CTGAAG 2 cut(s) 348, 475
EcoICRI GAGCTC 3 cut(s) 418, 646, 904
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 1080
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 3 cut(s) 225, 840, 1266
EcoT38I GRGCYC 5 cut(s) 362, 420, 648, 906, 1084
ErhI CCWWGG 3 cut(s) 225, 840, 1266
FaeI CATG 8 cut(s) 229, 400, 416, 603, 628, 668, 1088, 1093
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FatI CATG 8 cut(s) 225, 396, 412, 599, 624, 664, 1084, 1089
FauI CCCGC 2 cut(s) 1067, 1141
Fnu4HI GCNGC 9 cut(s) 243, 286, 370, 523, 854, 857, 997, 1095, 1104
FokI GGATG 6 cut(s) 208, 758, 962, 1132, 1184, 1256
FriOI GRGCYC 5 cut(s) 362, 420, 648, 906, 1084
Fsp4HI GCNGC 9 cut(s) 243, 286, 370, 523, 854, 857, 997, 1095, 1104
FspBI CTAG 2 cut(s) 218, 317
GluI GCNGC 9 cut(s) 243, 286, 370, 523, 854, 857, 997, 1095, 1104
GsaI CCCAGC 1 cut(s) 683
GsuI CTGGAG 1 cut(s) 662
HapII CCGG 4 cut(s) 910, 1041, 1117, 1215
Hin1II CATG 8 cut(s) 229, 400, 416, 603, 628, 668, 1088, 1093
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 5 cut(s) 64, 82, 827, 1054, 1205
HpaII CCGG 4 cut(s) 910, 1041, 1117, 1215
HphI GGTGA 2 cut(s) 143, 182
Hpy166II GTNNAC 3 cut(s) 185, 547, 784
Hpy188I TCNGA 4 cut(s) 494, 676, 753, 1059
Hpy188III TCNNGA 6 cut(s) 326, 625, 686, 739, 862, 1006
Hpy8I GTNNAC 3 cut(s) 185, 547, 784
Hpy99I CGWCG 3 cut(s) 896, 1066, 1072
HpyAV CCTTC 6 cut(s) 173, 394, 499, 504, 585, 937
HpyCH4IV ACGT 2 cut(s) 880, 990
HpyF10VI GCNNNNNNNGC 6 cut(s) 282, 366, 942, 951, 1100, 1103
HpyF3I CTNAG 3 cut(s) 312, 517, 581
HpySE526I ACGT 2 cut(s) 880, 990
Hsp92II CATG 8 cut(s) 229, 400, 416, 603, 628, 668, 1088, 1093
Kzo9I GATC 6 cut(s) 99, 320, 392, 714, 762, 766
Lsp1109I GCAGC 7 cut(s) 229, 297, 381, 509, 840, 868, 1008
LweI GCATC 4 cut(s) 230, 257, 467, 780
MaeI CTAG 2 cut(s) 218, 317
MaeII ACGT 2 cut(s) 880, 990
MaeIII GTNAC 1 cut(s) 986
MalI GATC 6 cut(s) 101, 322, 394, 716, 764, 768
MbiI CCGCTC 1 cut(s) 1074
MboI GATC 6 cut(s) 99, 320, 392, 714, 762, 766
MflI RGATCY 2 cut(s) 320, 392
MhlI GDGCHC 5 cut(s) 362, 420, 648, 906, 1084
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 809, 1237
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 821, 1199
MmeI TCCRAC 1 cut(s) 984
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 948, 1017, 1260
MslI CAYNNNNRTG 1 cut(s) 623
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 732
MspI CCGG 4 cut(s) 910, 1041, 1117, 1215
MspR9I CCNGG 1 cut(s) 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 6 cut(s) 282, 366, 942, 951, 1100, 1103
NcoI CCATGG 1 cut(s) 225
NdeII GATC 6 cut(s) 99, 320, 392, 714, 762, 766
NlaIII CATG 8 cut(s) 229, 400, 416, 603, 628, 668, 1088, 1093
NlaIV GGNNCC 8 cut(s) 361, 405, 487, 616, 684, 914, 955, 1082
NmeAIII GCCGAG 1 cut(s) 1132
NspI RCATGY 1 cut(s) 668
NspV TTCGAA 2 cut(s) 813, 1235
PaeI GCATGC 1 cut(s) 668
PagI TCATGA 1 cut(s) 624
PceI AGGCCT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 1067
PfeI GAWTC 3 cut(s) 64, 82, 1054
PflMI CCANNNNNTGG 1 cut(s) 1090
PkrI GCNGC 9 cut(s) 244, 287, 371, 524, 855, 858, 998, 1096, 1105
Ple19I CGATCG 1 cut(s) 769
PleI GAGTC 2 cut(s) 821, 1199
PpsI GAGTC 2 cut(s) 821, 1199
Psp124BI GAGCTC 3 cut(s) 420, 648, 906
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 8 cut(s) 361, 405, 487, 616, 684, 914, 955, 1082
PspOMI GGGCCC 1 cut(s) 1080
PspPI GGNCC 4 cut(s) 683, 943, 1080, 1081
PstI CTGCAG 2 cut(s) 858, 998
PsuI RGATCY 2 cut(s) 320, 392
PvuI CGATCG 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 732
RsaI GTAC 2 cut(s) 821, 1202
RsaNI GTAC 2 cut(s) 820, 1201
RseI CAYNNNNRTG 1 cut(s) 623
SacI GAGCTC 3 cut(s) 420, 648, 906
SaqAI TTAA 3 cut(s) 948, 1017, 1260
SatI GCNGC 9 cut(s) 243, 286, 370, 523, 854, 857, 997, 1095, 1104
Sau3AI GATC 6 cut(s) 99, 320, 392, 714, 762, 766
Sau96I GGNCC 4 cut(s) 683, 943, 1080, 1081
SchI GAGTC 2 cut(s) 821, 1199
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 5 cut(s) 362, 420, 648, 906, 1084
SfaNI GCATC 4 cut(s) 230, 257, 467, 780
SfcI CTRYAG 2 cut(s) 854, 994
SfuI TTCGAA 2 cut(s) 813, 1235
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 2 cut(s) 364, 737
SmoI CTYRAG 2 cut(s) 364, 737
SphI GCATGC 1 cut(s) 668
Sse9I AATT 2 cut(s) 809, 1237
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 5 cut(s) 1074, 1095, 1103, 1148, 1190
SspMI CTAG 2 cut(s) 218, 317
SstI GAGCTC 3 cut(s) 420, 648, 906
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 3 cut(s) 225, 840, 1266
TaiI ACGT 2 cut(s) 883, 993
TaqI TCGA 5 cut(s) 765, 813, 930, 1138, 1235
TasI AATT 2 cut(s) 809, 1237
TauI GCSGC 2 cut(s) 1097, 1106
TfiI GAWTC 3 cut(s) 64, 82, 1054
Tru1I TTAA 3 cut(s) 948, 1017, 1260
Tru9I TTAA 3 cut(s) 948, 1017, 1260
TscAI CASTG 2 cut(s) 923, 1104
TseI GCWGC 7 cut(s) 242, 285, 369, 522, 853, 856, 996
TspDTI ATGAA 4 cut(s) 393, 413, 613, 641
TspRI CASTG 2 cut(s) 923, 1104
Van91I CCANNNNNTGG 1 cut(s) 1090
VpaK11BI GGWCC 1 cut(s) 683
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 2 cut(s) 809, 1237
XceI RCATGY 1 cut(s) 668
XspI CTAG 2 cut(s) 218, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.