Rh6CG375500

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015551
Physical Location & Seq
Forward (+)
56187187 .. 56189026
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG375500.1

Sequence Viewer

Length: 1326 bp
ATGTCTACAACAATGGCCAAACTCAAAAGCCAGAAAAAACCCACCAAGCCAACCCACCAAAAGAGCAAGAAACAGAATCAAAACCAGAACCAGAATCCCCAAAAGCCAGAGATCAAACCACCCTATTGGGCAGTTGTAAGAGGCTTACTGACTTGCAAACATCACCAAGCAGTTCAGCTACTACAACAAGAAGGTAAACATCACCCACAGAAACAACAAAATGAGCAACTAGCATCCATGGAGGAAATGAGTGCTGCCAAGAAATGCAAGAAGATGAGATGCTCTGGCTCATTGTGCAGCAACACAAAAATCACACACAGGCCTGAGCTAGGATCTCCTGAAGTCCACAAGAAAAGGGCTTCTTCAATGGGCTCCTCAAGTAGCACAAATGAAACTTCAAGCAGATCCATGAAGGCTCCTCTGCATGAGCTCAATGGAGTTGTCTCTACCTCTTCTTCTTCACTCTCTGCATCTTCAAACATCTCCTCTGCTGGTGGTTCCTTCAGAGCAATGCCTTTTAGAAGGTTCTCAGGCTGCTATGAGTGTAGAATGGTGGTTGACCCTGTTCTTGGTTTCGCCAGAGACCCTTCTCTCAGGGGAAGCATTTGCTCATGCCCTGAATGTGGAGCCATTTTCATGAAAGCCGAAAACCTGGAGCTCCATCAAGCTCTTAGGCATGCAGTTTCCGAGCTGGGTCCAGAGGACACGAGCAAGAACATAGTGGAGATCATCTTCCAATCCAGCTGGCTCAAGAAACAAGCTCCGATTTGCAAGATCGATCGCATCCTCAAAGTCCACAACACACAGAAAACAATCTCCAAATTCGAAGAGTACCGAGACTCCATCAAAGCCAAGGCCACCAAGCTGCAGCTCCCGAACAAGAAACACCCACGTTGCATTGCAGACGGCAACGAGCTCCTCCGGTTCCACTGCACCACCTTCGACTGCTCTTTGGGCCTTAACGGCTCCTCCAACCTCTGCAACTCCATCCCAAGCTGTAACGTCTGCAGCATAATCAAGAACGGGTTTAAAGTTGATAGGAGTGAGTTGGCCGGAAGTAATGGGATTCTGACGACGGCGACGAGCGGGAGGGCGCATGACATGGCGGCAGTGGCGGCGGAGGACGGCCGGATGGCTATGCTGGTGTGTCGAGTGATAGCGGGGCGAGTGAAGAAAAATGTGGATGGACAAGGTGGTGGTGGTGCGGTGGAAGAGTACGACTCGGTGGCCGGAGCTGTGGGGGTGTATTCGAATTTGGATGAGTTGTATGTGTTTAATCCCAAGGCTATTTTGCCTTGTTTTGTTGTCATATATGGAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

48.12

Weight (kDa)

9.39

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015551)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26340
malus_domestica MD08G1169800.v1.1 MD15G1356300.v1.1
prunus_persica Prupe.1G503600_v2.0.a1
pyrus_communis pycom08g14520 pycom15g31830
rosa_chinensis RchiOBHm_Chr6g0294921
rosa_laevigata RLG00000011827
rosa_multiflora Rmu_sc0002700.1_g000047
rosa_roxburghii Rroxscaffold_7G00172840
rosa_rugosa Rorug06G0248300
rosa_samantha Rh6AG361500 Rh6BG368900 Rh6CG375500 Rh6DG361900
rosa_wichuraiana Rw6G031520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1086
AccI GTMKAC 1 cut(s) 5
AciI CCGC 6 cut(s) 1086, 1106, 1115, 1118, 1160, 1205
AclWI GGATC 2 cut(s) 340, 399
AcoI YGGCCR 4 cut(s) 15, 1050, 1126, 1227
AcsI RAATTY 2 cut(s) 821, 1252
AcuI CTGAAG 2 cut(s) 360, 487
AfaI GTAC 2 cut(s) 833, 1217
AfiI CCNNNNNNNGG 3 cut(s) 329, 569, 623
AgsI TTSAA 3 cut(s) 366, 399, 477
AjnI CCWGG 1 cut(s) 651
Alw21I GWGCWC 3 cut(s) 432, 660, 918
Alw26I GTCTC 3 cut(s) 448, 576, 831
AlwI GGATC 2 cut(s) 340, 399
AoxI GGCC 7 cut(s) 15, 320, 855, 955, 1050, 1126, 1227
ApeKI GCWGC 6 cut(s) 254, 297, 534, 865, 868, 1008
ApoI RAATTY 2 cut(s) 821, 1252
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 695, 955
AsuHPI GGTGA 2 cut(s) 155, 194
AsuII TTCGAA 2 cut(s) 825, 1250
AvaII GGWCC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 4 cut(s) 374, 432, 660, 918
BauI CACGAG 1 cut(s) 706
Bbv12I GWGCWC 3 cut(s) 432, 660, 918
BbvI GCAGC 6 cut(s) 241, 309, 521, 852, 880, 1020
BccI CCATC 5 cut(s) 669, 851, 995, 1126, 1178
BceAI ACGGC 4 cut(s) 922, 979, 1092, 1141
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 3 cut(s) 448, 576, 831
BfaI CTAG 2 cut(s) 230, 329
BfmI CTRYAG 2 cut(s) 866, 1006
BglI GCCNNNNNGGC 1 cut(s) 963
BisI GCNGC 8 cut(s) 255, 298, 535, 866, 869, 1009, 1107, 1116
BlsI GCNGC 8 cut(s) 256, 299, 536, 867, 870, 1010, 1108, 1117
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 2 cut(s) 695, 955
BmiI GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 4 cut(s) 242, 269, 479, 792
BplI GAGNNNNNCTC 2 cut(s) 1205, 1237
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 2 cut(s) 825, 1250
BpuEI CTTGAG 2 cut(s) 361, 734
Bsa29I ATCGAT 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 237, 852, 1281
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 953, 983
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 569, 623
Bse3DI GCAATG 2 cut(s) 516, 897
BseBI CCWGG 1 cut(s) 653
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 3 cut(s) 237, 852, 1281
BseGI GGATG 6 cut(s) 233, 783, 987, 1137, 1189, 1264
BseLI CCNNNNNNNGG 3 cut(s) 329, 569, 623
BseMI GCAATG 2 cut(s) 516, 897
BseMII CTCAG 3 cut(s) 315, 543, 607
BseRI GAGGAG 5 cut(s) 364, 408, 475, 908, 958
BseX3I CGGCCG 1 cut(s) 1126
BseXI GCAGC 6 cut(s) 241, 309, 521, 852, 880, 1020
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 2 cut(s) 316, 916
Bsh1285I CGRYCG 2 cut(s) 781, 1129
BshFI GGCC 7 cut(s) 17, 322, 857, 957, 1052, 1128, 1229
BshVI ATCGAT 1 cut(s) 777
BsiEI CGRYCG 2 cut(s) 781, 1129
BsiHKAI GWGCWC 3 cut(s) 432, 660, 918
BsiSI CCGG 4 cut(s) 922, 1053, 1129, 1230
BslI CCNNNNNNNGG 3 cut(s) 329, 569, 623
BsmAI GTCTC 3 cut(s) 448, 576, 831
BsnI GGCC 7 cut(s) 17, 322, 857, 957, 1052, 1128, 1229
Bso31I GGTCTC 1 cut(s) 576
Bsp119I TTCGAA 2 cut(s) 825, 1250
Bsp1286I GDGCHC 4 cut(s) 374, 432, 660, 918
Bsp143I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 6 cut(s) 1086, 1106, 1115, 1118, 1160, 1205
BspANI GGCC 7 cut(s) 17, 322, 857, 957, 1052, 1128, 1229
BspCNI CTCAG 3 cut(s) 316, 542, 606
BspDI ATCGAT 1 cut(s) 777
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
BspMAI CTGCAG 2 cut(s) 870, 1010
BspPI GGATC 2 cut(s) 340, 399
BspT104I TTCGAA 2 cut(s) 825, 1250
BspTNI GGTCTC 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 1086
BsrDI GCAATG 2 cut(s) 516, 897
BssECI CCNNGG 3 cut(s) 237, 852, 1281
BssMI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BssSI CACGAG 1 cut(s) 706
BssT1I CCWWGG 3 cut(s) 237, 852, 1281
Bst2BI CACGAG 1 cut(s) 706
Bst2UI CCWGG 1 cut(s) 653
Bst6I CTCTTC 3 cut(s) 457, 822, 1206
BstBI TTCGAA 2 cut(s) 825, 1250
BstC8I GCNNGC 2 cut(s) 678, 746
BstDEI CTNAG 4 cut(s) 324, 529, 593, 671
BstDSI CCRYGG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 6 cut(s) 233, 783, 987, 1137, 1189, 1264
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 6 cut(s) 114, 335, 407, 729, 777, 781
BstMAI GTCTC 3 cut(s) 448, 576, 831
BstMBI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BstMCI CGRYCG 2 cut(s) 781, 1129
BstMWI GCNNNNNNNGC 5 cut(s) 294, 954, 963, 1112, 1115
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 2 cut(s) 866, 1006
BstV1I GCAGC 6 cut(s) 241, 309, 521, 852, 880, 1020
BstX2I RGATCY 2 cut(s) 332, 404
BstXI CCANNNNNNTGG 1 cut(s) 126
BstYI RGATCY 2 cut(s) 332, 404
BstZI CGGCCG 1 cut(s) 1126
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 7 cut(s) 17, 322, 857, 957, 1052, 1128, 1229
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 6 cut(s) 233, 783, 987, 1137, 1189, 1264
BtsI GCAGTG 2 cut(s) 928, 1116
BtsIMutI CAGTG 2 cut(s) 928, 1116
Cac8I GCNNGC 2 cut(s) 678, 746
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 695, 955
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 2 cut(s) 832, 1216
CviAII CATG 8 cut(s) 238, 409, 425, 612, 637, 677, 1097, 1102
CviQI GTAC 2 cut(s) 832, 1216
DdeI CTNAG 4 cut(s) 324, 529, 593, 671
DpnI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
DpnII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 4 cut(s) 15, 1050, 1126, 1227
EagI CGGCCG 1 cut(s) 1126
Eam1104I CTCTTC 3 cut(s) 457, 822, 1206
EarI CTCTTC 3 cut(s) 457, 822, 1206
EciI GGCGGA 1 cut(s) 1133
Ecl136II GAGCTC 3 cut(s) 430, 658, 916
EclXI CGGCCG 1 cut(s) 1126
Eco130I CCWWGG 3 cut(s) 237, 852, 1281
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 4 cut(s) 374, 432, 660, 918
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 695
Eco52I CGGCCG 1 cut(s) 1126
Eco53kI GAGCTC 3 cut(s) 430, 658, 916
Eco57I CTGAAG 2 cut(s) 360, 487
EcoICRI GAGCTC 3 cut(s) 430, 658, 916
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 3 cut(s) 237, 852, 1281
EcoT38I GRGCYC 4 cut(s) 374, 432, 660, 918
ErhI CCWWGG 3 cut(s) 237, 852, 1281
FaeI CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 8 cut(s) 237, 408, 424, 611, 636, 676, 1096, 1101
FauI CCCGC 2 cut(s) 1079, 1153
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 8 cut(s) 255, 298, 535, 866, 869, 1009, 1107, 1116
FokI GGATG 6 cut(s) 220, 770, 974, 1144, 1196, 1271
FriOI GRGCYC 4 cut(s) 374, 432, 660, 918
Fsp4HI GCNGC 8 cut(s) 255, 298, 535, 866, 869, 1009, 1107, 1116
FspBI CTAG 2 cut(s) 230, 329
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 8 cut(s) 255, 298, 535, 866, 869, 1009, 1107, 1116
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 7 cut(s) 17, 322, 857, 957, 1052, 1128, 1229
HapII CCGG 4 cut(s) 922, 1053, 1129, 1230
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 5 cut(s) 76, 94, 839, 1066, 1220
HpaII CCGG 4 cut(s) 922, 1053, 1129, 1230
HphI GGTGA 2 cut(s) 155, 194
Hpy166II GTNNAC 5 cut(s) 6, 197, 346, 559, 796
Hpy188I TCNGA 4 cut(s) 506, 688, 765, 1071
Hpy188III TCNNGA 6 cut(s) 338, 637, 698, 751, 874, 1018
Hpy8I GTNNAC 5 cut(s) 6, 197, 346, 559, 796
Hpy99I CGWCG 2 cut(s) 1078, 1084
HpyAV CCTTC 6 cut(s) 185, 406, 511, 516, 597, 949
HpyCH4IV ACGT 2 cut(s) 892, 1002
HpyF10VI GCNNNNNNNGC 5 cut(s) 294, 954, 963, 1112, 1115
HpyF3I CTNAG 4 cut(s) 324, 529, 593, 671
HpySE526I ACGT 2 cut(s) 892, 1002
Hsp92II CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
HspAI GCGC 1 cut(s) 1094
Kzo9I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Lsp1109I GCAGC 6 cut(s) 241, 309, 521, 852, 880, 1020
LweI GCATC 4 cut(s) 242, 269, 479, 792
MaeI CTAG 2 cut(s) 230, 329
MaeII ACGT 2 cut(s) 892, 1002
MaeIII GTNAC 1 cut(s) 998
MalI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
MbiI CCGCTC 1 cut(s) 1086
MboI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
MflI RGATCY 2 cut(s) 332, 404
MhlI GDGCHC 4 cut(s) 374, 432, 660, 918
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 821, 1252
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 833, 1214
MmeI TCCRAC 1 cut(s) 996
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 960, 1029, 1275
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 4 cut(s) 922, 1053, 1129, 1230
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 5 cut(s) 294, 954, 963, 1112, 1115
NcoI CCATGG 1 cut(s) 237
NdeII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
NlaIII CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
NlaIV GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 2 cut(s) 825, 1250
PaeI GCATGC 1 cut(s) 680
PagI TCATGA 1 cut(s) 636
PceI AGGCCT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 76, 94, 1066
PkrI GCNGC 8 cut(s) 256, 299, 536, 867, 870, 1010, 1108, 1117
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 833, 1214
PpsI GAGTC 2 cut(s) 833, 1214
Psp124BI GAGCTC 3 cut(s) 432, 660, 918
Psp6I CCWGG 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
PspPI GGNCC 2 cut(s) 695, 955
PstI CTGCAG 2 cut(s) 870, 1010
PsuI RGATCY 2 cut(s) 332, 404
PvuI CGATCG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 744
RsaI GTAC 2 cut(s) 833, 1217
RsaNI GTAC 2 cut(s) 832, 1216
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 3 cut(s) 432, 660, 918
SaqAI TTAA 3 cut(s) 960, 1029, 1275
SatI GCNGC 8 cut(s) 255, 298, 535, 866, 869, 1009, 1107, 1116
Sau3AI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Sau96I GGNCC 2 cut(s) 695, 955
SchI GAGTC 2 cut(s) 833, 1214
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 4 cut(s) 374, 432, 660, 918
SfaNI GCATC 4 cut(s) 242, 269, 479, 792
SfcI CTRYAG 2 cut(s) 866, 1006
SfuI TTCGAA 2 cut(s) 825, 1250
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 376, 749
SmoI CTYRAG 2 cut(s) 376, 749
SphI GCATGC 1 cut(s) 680
Sse9I AATT 2 cut(s) 821, 1252
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 6 cut(s) 1086, 1106, 1115, 1118, 1160, 1205
SspMI CTAG 2 cut(s) 230, 329
SstI GAGCTC 3 cut(s) 432, 660, 918
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 3 cut(s) 237, 852, 1281
TaiI ACGT 2 cut(s) 895, 1005
TaqI TCGA 5 cut(s) 777, 825, 942, 1150, 1250
TasI AATT 2 cut(s) 821, 1252
TauI GCSGC 2 cut(s) 1109, 1118
TfiI GAWTC 3 cut(s) 76, 94, 1066
Tru1I TTAA 3 cut(s) 960, 1029, 1275
Tru9I TTAA 3 cut(s) 960, 1029, 1275
TscAI CASTG 2 cut(s) 935, 1116
TseI GCWGC 6 cut(s) 254, 297, 534, 865, 868, 1008
TspDTI ATGAA 4 cut(s) 405, 425, 625, 653
TspRI CASTG 2 cut(s) 935, 1116
VpaK11BI GGWCC 1 cut(s) 695
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 2 cut(s) 821, 1252
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 230, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.