Rroxscaffold_7G00172840

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015551
Physical Location & Seq
Reverse (-)
12981306 .. 12983002
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172840.1

Sequence Viewer

Length: 1329 bp
ATGTCTACAACAATGGCCAAACTCAAAAGCCAAAAAAAACCCACCAAGCCAACCCACCAAAAGAGCAAGAAACAGAATCAAAACCAGAACCAGAATCCCCAAAAGCCAGAGATCAAACCACCCTATTGGGCAGTTGTAAGAGGCTTACTGACTTGCAAACATCACCAAGCAGTTCAGCTACTACAACAAGAAGGTAAACATCACCCACAGAAACAACAAAATGAGCAACTAGCATCCATGGAGGAAATGAGTGCTGCCAAGAAATGCAAGAAGATGAGATGCTCTGGCTCATTGTGCAGCAACACAAAAATCACACACAGGCCTGAGCTAGGATCTCCTGAAGTCCACAAGAAAAGGGCTTCTTCAATGGGCTCCTCAAGCAGCACAAATGAAACTTCAAGCAGATCCATGAAGGCTCCTCTGCATGAGCTCAATGGAGTTGTCTCTACCTCGTCTTCTTCACTATCTGCATCTTCAAACATCTCCTCTGCTGGCGGTTCCTTCAGAGCAATGCCTTTCAGAAGATTCTCAGGCTGCTATGAGTGTAGAATGGTGGTTGACCCTGTTCTTGGTTTCGCCAGAGACCCTTCTCTCAGGGGAAGCATTTGCTCATGCCCTGAATGTGGAGCCATTTTCATGAAAGCCGAAAACCTGGAGCTCCATCAAGCTGTTAGGCATGCAGTTTCCGAGCTGGGTCCAGAGGACACAAGCAAGAACATAGTGGAGATCATCTTCCAATCCAGCTGGCTCAAGAAACAAGCTCCGATTTGCAAGATCGATCGCATCCTCAAAGTCCACAACACACAGAAAACAATCTCCAAATTCGAAGAGTACCGAGACTCCATCAAAGCCAAGGCCACCAAGCTGCAGCTCCCGAACAAGAAACACCCACGTTGCATTGCCGACGGCAACGAGCTCCTCCGGTTCCACTGCACCACCTTCGACTGCTCTTTGGGCCTTAACGGCTCCTCCAACCTCTGCAACTCCATCCCAAGCTGCAACGTCTGCAGCATAATCAAGAACGGGTTTAAAGTTGATAGTAGTGAGTTGGCCGGAAGTAATGGGATTCTGACGACGGCGACGAGCGGGAGGGCGCATGACATGGCCGCAGTGGCTGCGGAGGACGGCCGGAGGGCTATGCTGGTGTGTCGAGTGATAGCGGGGCGAGTGAAGAAAAATGTGGATGGACAAGGTGGTGGTGGTGGTGTGGTGGAAGAGTACGACTCGGTGGCCGGAGCAATGGGGGTGTATTCGAATTTGGATGAGTTATATGTGTTTAATCCCAAGGCTATTTTGCCTTGTTTTGTTGTCATATATGGAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

48.18

Weight (kDa)

9.39

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015551)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26340
malus_domestica MD08G1169800.v1.1 MD15G1356300.v1.1
prunus_persica Prupe.1G503600_v2.0.a1
pyrus_communis pycom08g14520 pycom15g31830
rosa_chinensis RchiOBHm_Chr6g0294921
rosa_laevigata RLG00000011827
rosa_multiflora Rmu_sc0002700.1_g000047
rosa_roxburghii Rroxscaffold_7G00172840
rosa_rugosa Rorug06G0248300
rosa_samantha Rh6AG361500 Rh6BG368900 Rh6CG375500 Rh6DG361900
rosa_wichuraiana Rw6G031520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1086
AccI GTMKAC 1 cut(s) 5
AciI CCGC 5 cut(s) 495, 1086, 1107, 1118, 1160
AclWI GGATC 2 cut(s) 340, 399
AcoI YGGCCR 5 cut(s) 15, 1050, 1104, 1126, 1230
AcsI RAATTY 2 cut(s) 821, 1255
AcuI CTGAAG 2 cut(s) 360, 487
AfaI GTAC 2 cut(s) 833, 1220
AfiI CCNNNNNNNGG 3 cut(s) 329, 569, 623
AgsI TTSAA 3 cut(s) 366, 399, 477
AjnI CCWGG 1 cut(s) 651
Alw21I GWGCWC 3 cut(s) 432, 660, 918
Alw26I GTCTC 3 cut(s) 448, 576, 831
AlwI GGATC 2 cut(s) 340, 399
AlwNI CAGNNNCTG 1 cut(s) 1115
AoxI GGCC 8 cut(s) 15, 320, 855, 955, 1050, 1104, 1126, 1230
ApeKI GCWGC 9 cut(s) 254, 297, 381, 534, 865, 868, 996, 1008, 1115
ApoI RAATTY 2 cut(s) 821, 1255
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 695, 955
AsuHPI GGTGA 2 cut(s) 155, 194
AsuII TTCGAA 2 cut(s) 825, 1253
AvaII GGWCC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 4 cut(s) 374, 432, 660, 918
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 3 cut(s) 432, 660, 918
BbvI GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1102
BccI CCATC 4 cut(s) 669, 851, 995, 1178
BceAI ACGGC 4 cut(s) 922, 979, 1092, 1141
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 3 cut(s) 448, 576, 831
BfaI CTAG 2 cut(s) 230, 329
BfmI CTRYAG 2 cut(s) 866, 1006
BglI GCCNNNNNGGC 2 cut(s) 963, 1112
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 2 cut(s) 695, 955
BmiI GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 4 cut(s) 242, 269, 479, 792
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 1208, 1240
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 2 cut(s) 825, 1253
BpuEI CTTGAG 2 cut(s) 361, 734
Bsa29I ATCGAT 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 237, 852, 1284
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 953, 983
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 569, 623
Bse3DI GCAATG 3 cut(s) 516, 897, 1245
BseBI CCWGG 1 cut(s) 653
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 3 cut(s) 237, 852, 1284
BseGI GGATG 5 cut(s) 233, 783, 987, 1189, 1267
BseLI CCNNNNNNNGG 3 cut(s) 329, 569, 623
BseMI GCAATG 3 cut(s) 516, 897, 1245
BseMII CTCAG 3 cut(s) 315, 543, 607
BseRI GAGGAG 5 cut(s) 364, 408, 475, 908, 958
BseX3I CGGCCG 1 cut(s) 1126
BseXI GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1102
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 2 cut(s) 316, 916
Bsh1285I CGRYCG 2 cut(s) 781, 1129
BshFI GGCC 8 cut(s) 17, 322, 857, 957, 1052, 1106, 1128, 1232
BshVI ATCGAT 1 cut(s) 777
BsiEI CGRYCG 2 cut(s) 781, 1129
BsiHKAI GWGCWC 3 cut(s) 432, 660, 918
BsiSI CCGG 4 cut(s) 922, 1053, 1129, 1233
BslI CCNNNNNNNGG 3 cut(s) 329, 569, 623
BsmAI GTCTC 3 cut(s) 448, 576, 831
BsnI GGCC 8 cut(s) 17, 322, 857, 957, 1052, 1106, 1128, 1232
Bso31I GGTCTC 1 cut(s) 576
Bsp119I TTCGAA 2 cut(s) 825, 1253
Bsp1286I GDGCHC 4 cut(s) 374, 432, 660, 918
Bsp143I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 5 cut(s) 495, 1086, 1107, 1118, 1160
BspANI GGCC 8 cut(s) 17, 322, 857, 957, 1052, 1106, 1128, 1232
BspCNI CTCAG 3 cut(s) 316, 542, 606
BspDI ATCGAT 1 cut(s) 777
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
BspMAI CTGCAG 2 cut(s) 870, 1010
BspPI GGATC 2 cut(s) 340, 399
BspT104I TTCGAA 2 cut(s) 825, 1253
BspTNI GGTCTC 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 1086
BsrDI GCAATG 3 cut(s) 516, 897, 1245
BssECI CCNNGG 3 cut(s) 237, 852, 1284
BssMI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BssT1I CCWWGG 3 cut(s) 237, 852, 1284
Bst2UI CCWGG 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 822, 1209
BstAPI GCANNNNNTGC 2 cut(s) 1005, 1115
BstBI TTCGAA 2 cut(s) 825, 1253
BstC8I GCNNGC 3 cut(s) 493, 678, 746
BstDEI CTNAG 3 cut(s) 324, 529, 593
BstDSI CCRYGG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 5 cut(s) 233, 783, 987, 1189, 1267
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 6 cut(s) 114, 335, 407, 729, 777, 781
BstMAI GTCTC 3 cut(s) 448, 576, 831
BstMBI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
BstMCI CGRYCG 2 cut(s) 781, 1129
BstMWI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 2 cut(s) 866, 1006
BstV1I GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1102
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 332, 404
BstXI CCANNNNNNTGG 1 cut(s) 126
BstYI RGATCY 2 cut(s) 332, 404
BstZI CGGCCG 1 cut(s) 1126
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 8 cut(s) 17, 322, 857, 957, 1052, 1106, 1128, 1232
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 5 cut(s) 233, 783, 987, 1189, 1267
BtsI GCAGTG 2 cut(s) 928, 1116
BtsIMutI CAGTG 2 cut(s) 928, 1116
Cac8I GCNNGC 3 cut(s) 493, 678, 746
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 695, 955
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 2 cut(s) 832, 1219
CviAII CATG 8 cut(s) 238, 409, 425, 612, 637, 677, 1097, 1102
CviQI GTAC 2 cut(s) 832, 1219
DdeI CTNAG 3 cut(s) 324, 529, 593
DpnI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
DpnII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 5 cut(s) 15, 1050, 1104, 1126, 1230
EagI CGGCCG 1 cut(s) 1126
Eam1104I CTCTTC 2 cut(s) 822, 1209
EarI CTCTTC 2 cut(s) 822, 1209
Ecl136II GAGCTC 3 cut(s) 430, 658, 916
EclXI CGGCCG 1 cut(s) 1126
Eco130I CCWWGG 3 cut(s) 237, 852, 1284
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 4 cut(s) 374, 432, 660, 918
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 695
Eco52I CGGCCG 1 cut(s) 1126
Eco53kI GAGCTC 3 cut(s) 430, 658, 916
Eco57I CTGAAG 2 cut(s) 360, 487
EcoICRI GAGCTC 3 cut(s) 430, 658, 916
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 3 cut(s) 237, 852, 1284
EcoT38I GRGCYC 4 cut(s) 374, 432, 660, 918
ErhI CCWWGG 3 cut(s) 237, 852, 1284
FaeI CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 8 cut(s) 237, 408, 424, 611, 636, 676, 1096, 1101
FauI CCCGC 2 cut(s) 1079, 1153
FblI GTMKAC 1 cut(s) 5
FokI GGATG 5 cut(s) 220, 770, 974, 1196, 1274
FriOI GRGCYC 4 cut(s) 374, 432, 660, 918
FspBI CTAG 2 cut(s) 230, 329
GlaI GCGC 1 cut(s) 1095
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 8 cut(s) 17, 322, 857, 957, 1052, 1106, 1128, 1232
HapII CCGG 4 cut(s) 922, 1053, 1129, 1233
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 6 cut(s) 76, 94, 525, 839, 1066, 1223
HpaII CCGG 4 cut(s) 922, 1053, 1129, 1233
HphI GGTGA 2 cut(s) 155, 194
Hpy166II GTNNAC 5 cut(s) 6, 197, 346, 559, 796
Hpy188I TCNGA 5 cut(s) 506, 521, 688, 765, 1071
Hpy188III TCNNGA 6 cut(s) 338, 637, 698, 751, 874, 1018
Hpy8I GTNNAC 5 cut(s) 6, 197, 346, 559, 796
Hpy99I CGWCG 3 cut(s) 908, 1078, 1084
HpyAV CCTTC 5 cut(s) 185, 406, 511, 597, 949
HpyCH4IV ACGT 2 cut(s) 892, 1002
HpyF10VI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
HpyF3I CTNAG 3 cut(s) 324, 529, 593
HpySE526I ACGT 2 cut(s) 892, 1002
Hsp92II CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
HspAI GCGC 1 cut(s) 1094
Kzo9I GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Lsp1109I GCAGC 9 cut(s) 241, 309, 393, 521, 852, 880, 983, 1020, 1102
LweI GCATC 4 cut(s) 242, 269, 479, 792
MaeI CTAG 2 cut(s) 230, 329
MaeII ACGT 2 cut(s) 892, 1002
MalI GATC 6 cut(s) 113, 334, 406, 728, 776, 780
MbiI CCGCTC 1 cut(s) 1086
MboI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
MflI RGATCY 2 cut(s) 332, 404
MhlI GDGCHC 4 cut(s) 374, 432, 660, 918
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 2 cut(s) 821, 1255
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 833, 1217
MmeI TCCRAC 1 cut(s) 996
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 960, 1029, 1278
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 4 cut(s) 922, 1053, 1129, 1233
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 7 cut(s) 294, 378, 954, 963, 1005, 1112, 1115
NcoI CCATGG 1 cut(s) 237
NdeII GATC 6 cut(s) 111, 332, 404, 726, 774, 778
NlaIII CATG 8 cut(s) 241, 412, 428, 615, 640, 680, 1100, 1105
NlaIV GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 2 cut(s) 825, 1253
PaeI GCATGC 1 cut(s) 680
PagI TCATGA 1 cut(s) 636
PceI AGGCCT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PfeI GAWTC 4 cut(s) 76, 94, 525, 1066
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 833, 1217
PpsI GAGTC 2 cut(s) 833, 1217
Psp124BI GAGCTC 3 cut(s) 432, 660, 918
Psp6I CCWGG 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 7 cut(s) 373, 417, 499, 628, 696, 926, 967
PspPI GGNCC 2 cut(s) 695, 955
PstI CTGCAG 2 cut(s) 870, 1010
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 2 cut(s) 332, 404
PvuI CGATCG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 744
RsaI GTAC 2 cut(s) 833, 1220
RsaNI GTAC 2 cut(s) 832, 1219
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 3 cut(s) 432, 660, 918
SaqAI TTAA 3 cut(s) 960, 1029, 1278
Sau3AI GATC 6 cut(s) 111, 332, 404, 726, 774, 778
Sau96I GGNCC 2 cut(s) 695, 955
SchI GAGTC 2 cut(s) 833, 1217
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 4 cut(s) 374, 432, 660, 918
SfaNI GCATC 4 cut(s) 242, 269, 479, 792
SfcI CTRYAG 2 cut(s) 866, 1006
SfuI TTCGAA 2 cut(s) 825, 1253
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 376, 749
SmoI CTYRAG 2 cut(s) 376, 749
SphI GCATGC 1 cut(s) 680
Sse9I AATT 2 cut(s) 821, 1255
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 5 cut(s) 495, 1086, 1107, 1118, 1160
SspMI CTAG 2 cut(s) 230, 329
SstI GAGCTC 3 cut(s) 432, 660, 918
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 3 cut(s) 237, 852, 1284
TaiI ACGT 2 cut(s) 895, 1005
TaqI TCGA 5 cut(s) 777, 825, 942, 1150, 1253
TasI AATT 2 cut(s) 821, 1255
TauI GCSGC 1 cut(s) 1109
TfiI GAWTC 4 cut(s) 76, 94, 525, 1066
Tru1I TTAA 3 cut(s) 960, 1029, 1278
Tru9I TTAA 3 cut(s) 960, 1029, 1278
TscAI CASTG 2 cut(s) 935, 1116
TseI GCWGC 9 cut(s) 254, 297, 381, 534, 865, 868, 996, 1008, 1115
TspDTI ATGAA 4 cut(s) 405, 425, 625, 653
TspRI CASTG 2 cut(s) 935, 1116
VpaK11BI GGWCC 1 cut(s) 695
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 2 cut(s) 821, 1255
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 230, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.