Rorug06G0248300

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006602
Physical Location & Seq
Forward (+)
39490866 .. 39492247
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0248300.1

Sequence Viewer

Length: 462 bp
ATGTCAACCACCGTCCCCCCGTCCTCCCGATCTCCACCACCTCTGTCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCGGATCGCCACCCTGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGAGCCGAGCTTGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCACCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGACCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGGTGTGTTAGTATCAAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

153

Amino Acids

16.75

Weight (kDa)

12.0

Isoelectric Point (pI)

138.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 400
AccII CGCG 3 cut(s) 110, 220, 226
AclWI GGATC 3 cut(s) 53, 66, 97
AcoI YGGCCR 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 86, 436
AjnI CCWGG 3 cut(s) 71, 98, 306
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 3 cut(s) 53, 66, 97
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 6 cut(s) 74, 101, 147, 293, 359, 392
AspLEI GCGC 2 cut(s) 112, 161
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 4 cut(s) 120, 251, 266, 419
AvaI CYCGRG 1 cut(s) 205
BamHI GGATCC 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 404, 413
BbvCI CCTCAGC 1 cut(s) 405
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 162, 225
BciT130I CCWGG 3 cut(s) 73, 100, 308
BcoDI GTCTC 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 4 cut(s) 50, 53, 162, 304
BlsI GCNGC 4 cut(s) 51, 54, 163, 305
Bme1390I CCNGG 3 cut(s) 73, 100, 308
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 73, 100, 308
BpiI GAAGAC 2 cut(s) 404, 413
BplI GAGNNNNNCTC 2 cut(s) 199, 231
Bpu10I CCTNAGC 2 cut(s) 168, 405
BsaJI CCNNGG 4 cut(s) 71, 85, 98, 290
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 436
BseBI CCWGG 3 cut(s) 73, 100, 308
BseDI CCNNGG 4 cut(s) 71, 85, 98, 290
BseLI CCNNNNNNNGG 2 cut(s) 86, 436
BseMII CTCAG 2 cut(s) 159, 419
BseRI GAGGAG 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 359
BseYI CCCAGC 2 cut(s) 80, 155
Bsh1236I CGCG 3 cut(s) 110, 220, 226
Bsh1285I CGRYCG 2 cut(s) 186, 362
BshFI GGCC 6 cut(s) 76, 103, 149, 295, 361, 394
BsiEI CGRYCG 2 cut(s) 186, 362
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 56, 362
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 86, 436
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 6 cut(s) 76, 103, 149, 295, 361, 394
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 4 cut(s) 29, 58, 89, 338
BspANI GGCC 6 cut(s) 76, 103, 149, 295, 361, 394
BspCNI CTCAG 2 cut(s) 160, 418
BspFNI CGCG 3 cut(s) 110, 220, 226
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 3 cut(s) 53, 66, 97
BspQI GCTCTTC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 71, 85, 98, 290
BssMI GATC 4 cut(s) 29, 58, 89, 338
Bst2UI CCWGG 3 cut(s) 73, 100, 308
Bst4CI ACNGT 3 cut(s) 13, 138, 263
Bst6I CTCTTC 3 cut(s) 276, 318, 330
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 168, 405
BstFNI CGCG 3 cut(s) 110, 220, 226
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 112, 161
BstKTI GATC 4 cut(s) 32, 61, 92, 341
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 4 cut(s) 29, 58, 89, 338
BstMCI CGRYCG 2 cut(s) 186, 362
BstMWI GCNNNNNNNGC 4 cut(s) 100, 109, 178, 246
BstNI CCWGG 3 cut(s) 73, 100, 308
BstSCI CCNGG 3 cut(s) 71, 98, 306
BstUI CGCG 3 cut(s) 110, 220, 226
BstV2I GAAGAC 2 cut(s) 404, 413
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZI CGGCCG 1 cut(s) 359
BsuRI GGCC 6 cut(s) 76, 103, 149, 295, 361, 394
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 2 cut(s) 112, 161
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 3 cut(s) 209, 215, 398
DdeI CTNAG 2 cut(s) 168, 405
DpnI GATC 4 cut(s) 31, 60, 91, 340
DpnII GATC 4 cut(s) 29, 58, 89, 338
DrdI GACNNNNNNGTC 1 cut(s) 408
DseDI GACNNNNNNGTC 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 359
EagI CGGCCG 1 cut(s) 359
Eam1104I CTCTTC 3 cut(s) 276, 318, 330
EarI CTCTTC 3 cut(s) 276, 318, 330
EciI GGCGGA 2 cut(s) 180, 318
EclXI CGGCCG 1 cut(s) 359
Eco147I AGGCCT 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 71, 98, 306
Esp3I CGTCTC 1 cut(s) 269
FaqI GGGAC 1 cut(s) 54
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 4 cut(s) 50, 53, 162, 304
Fsp4HI GCNGC 4 cut(s) 50, 53, 162, 304
GlaI GCGC 2 cut(s) 111, 160
GluI GCNGC 4 cut(s) 50, 53, 162, 304
GsaI CCCAGC 2 cut(s) 84, 159
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 6 cut(s) 76, 103, 149, 295, 361, 394
HapII CCGG 2 cut(s) 56, 362
HgaI GACGC 3 cut(s) 209, 215, 398
HhaI GCGC 2 cut(s) 112, 161
Hin6I GCGC 2 cut(s) 110, 159
HinP1I GCGC 2 cut(s) 110, 159
HincII GTYRAC 3 cut(s) 6, 230, 401
HindII GTYRAC 3 cut(s) 6, 230, 401
HinfI GANTC 2 cut(s) 67, 208
HpaII CCGG 2 cut(s) 56, 362
HphI GGTGA 4 cut(s) 120, 251, 266, 419
Hpy166II GTNNAC 3 cut(s) 6, 230, 401
Hpy188I TCNGA 3 cut(s) 89, 338, 374
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 3 cut(s) 6, 230, 401
Hpy99I CGWCG 5 cut(s) 246, 249, 402, 420, 438
HpyAV CCTTC 5 cut(s) 114, 123, 204, 222, 293
HpyCH4III ACNGT 3 cut(s) 13, 138, 263
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 109, 178, 246
HpyF3I CTNAG 2 cut(s) 168, 405
HspAI GCGC 2 cut(s) 110, 159
Kzo9I GATC 4 cut(s) 29, 58, 89, 338
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 31, 60, 91, 340
MbiI CCGCTC 1 cut(s) 188
MboI GATC 4 cut(s) 29, 58, 89, 338
MboII GAAGA 6 cut(s) 263, 305, 317, 347, 404, 413
MflI RGATCY 1 cut(s) 58
MlyI GAGTC 2 cut(s) 76, 217
MmeI TCCRAC 1 cut(s) 397
MspI CCGG 2 cut(s) 56, 362
MspR9I CCNGG 3 cut(s) 73, 100, 308
MvaI CCWGG 3 cut(s) 73, 100, 308
MvnI CGCG 3 cut(s) 110, 220, 226
MwoI GCNNNNNNNGC 4 cut(s) 100, 109, 178, 246
NdeII GATC 4 cut(s) 29, 58, 89, 338
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 2 cut(s) 198, 271
NmuCI GTSAC 1 cut(s) 257
PceI AGGCCT 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 3 cut(s) 203, 253, 406
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 51, 54, 163, 305
PleI GAGTC 2 cut(s) 75, 216
PpsI GAGTC 2 cut(s) 75, 216
Psp6I CCWGG 3 cut(s) 71, 98, 306
PspFI CCCAGC 2 cut(s) 80, 155
PspGI CCWGG 3 cut(s) 71, 98, 306
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 318
SatI GCNGC 4 cut(s) 50, 53, 162, 304
Sau3AI GATC 4 cut(s) 29, 58, 89, 338
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 2 cut(s) 76, 217
ScrFI CCNGG 3 cut(s) 73, 100, 308
SetI ASST 6 cut(s) 43, 179, 238, 325, 406, 432
SseBI AGGCCT 1 cut(s) 76
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 3 cut(s) 71, 98, 306
TaaI ACNGT 3 cut(s) 13, 138, 263
TaqI TCGA 2 cut(s) 65, 400
TauI GCSGC 4 cut(s) 52, 55, 164, 306
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 422
Tth111I GACNNNGTC 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.