Rh6CG375000

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006602
Physical Location & Seq
Forward (+)
56111684 .. 56114544
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG375000.1

Sequence Viewer

Length: 1140 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAACCGCGGCCTGACCGTTTCGAAACTTGCAGAGAAAGGCCGTTGCCTCCTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTGTGCGTCCCGAACAACTCCGCCGGTAACTCCAAGTGCGATGCTTGCTTCGAATCCAGTCACCTCAAGAAGTGCTCCGGTTGCCAGGTTGTCTACTACTGCTCCAGCACTTGCCAGAAGTCGGAATGGAAGCTGCACCGTCTCGAATGTCAAGCTCTCTCGAAGCTTCCAAAGGAGAAGAGAAGGGCTGTTACGCCTTCTCTGCGTCTCATGATCAGACTCTACTGTCGTTCTAAGCTACAGTCTCAGAAGACTATTCCTACTTCTGCTATGGACAATTACAATTTGGTAGAGGCGTTGGTGGCTCACATGTCGGAGGTTGATGAGAAGCAAATGGTGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGCGGCCTGATATCAATGTAAAAGAGATTGCGGAGAATTTCTCAAAGTTTGCGTGCAATGCACACACAATTTGTGACAGTGAATTGAAACCCCTGGGTACAGGACTCTATCCTGTCATATCAATCATTAACCACAGCTGCCTGCCGAATTCTGTTCTATTATTTGAGGGAAGGTCAGCTGTTGTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGATAAGTTACATCGACACTGCTGGAAGCACTGTGACTCGGCAAAAGGCACTGAAGGAACAATACCTTTTTACCTGTGCATGTCCCCGCTGCATTAAAGCGGGTCATTACGAGGATATCCAAGAAAGTGCAATTCTGGAAGGCTACCGATGCAAGGATAATAAATGTGATGGTTTTTTGCTTCGCGACTCTGATGACAAGGGATTTATATGCCAACAATGTGGACGTCTTAAGAGCAAAGAAGAGATAATAGAGATGGAAAGTGAAATAAGATCATTGCAGGAAAAGGCTATTATAGCTGTAGAATCTGCACCTTCTATAAGTATCCTTCTTTTTTTTTTTCTTTTTTTTTTTTTGAGCATTACTCATTTTTATTGGCAATCAGATGTTCAATTACTGACTGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

379

Amino Acids

42.67

Weight (kDa)

7.75

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 247 8e-11 SET domain
zf-MYND PF01753 56 - 93 1.5e-09 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 354
AatII GACGTC 1 cut(s) 958
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 33, 915
AciI CCGC 7 cut(s) 31, 33, 150, 511, 539, 817, 830
AcsI RAATTY 2 cut(s) 544, 655
AcuI CTGAAG 2 cut(s) 491, 803
AcyI GRCGYC 1 cut(s) 955
AfaI GTAC 1 cut(s) 607
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 250, 883
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 2 cut(s) 595, 1121
AjnI CCWGG 3 cut(s) 97, 213, 600
AluBI AGCT 9 cut(s) 262, 284, 295, 367, 498, 645, 686, 722, 1028
AluI AGCT 9 cut(s) 262, 284, 295, 367, 498, 645, 686, 722, 1028
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 275, 341, 378
Ama87I CYCGRG 1 cut(s) 23
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 3 cut(s) 34, 64, 512
ApeKI GCWGC 3 cut(s) 262, 645, 819
ApoI RAATTY 2 cut(s) 544, 655
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 70, 182
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 4 cut(s) 304, 336, 776, 808
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 249, 632, 806
BccI CCATC 3 cut(s) 475, 893, 979
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 3 cut(s) 99, 215, 602
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 2 cut(s) 108, 342
BcoDI GTCTC 3 cut(s) 275, 341, 378
BfmI CTRYAG 2 cut(s) 368, 1029
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 959
BfuI GTATCC 1 cut(s) 1064
BisI GCNGC 5 cut(s) 34, 263, 512, 646, 820
BlsI GCNGC 5 cut(s) 35, 264, 513, 647, 821
Bme1390I CCNGG 3 cut(s) 99, 215, 602
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 3 cut(s) 99, 215, 602
BmsI GCATC 2 cut(s) 160, 869
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 4 cut(s) 533, 565, 1078, 1110
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 955
BsaJI CCNNGG 4 cut(s) 31, 98, 600, 601
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 883
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 571, 1004
BseBI CCWGG 3 cut(s) 99, 215, 602
BseDI CCNNGG 4 cut(s) 31, 98, 600, 601
BseLI CCNNNNNNNGG 2 cut(s) 250, 883
BseMI GCAATG 2 cut(s) 571, 1004
BseMII CTCAG 3 cut(s) 389, 491, 714
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 249, 632, 806
BsgI GTGCAG 2 cut(s) 248, 1023
Bsh1236I CGCG 2 cut(s) 33, 915
BshFI GGCC 3 cut(s) 36, 66, 514
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 153, 207
BslFI GGGAC 2 cut(s) 122, 798
BslI CCNNNNNNNGG 2 cut(s) 250, 883
BsmAI GTCTC 3 cut(s) 275, 341, 378
BsmBI CGTCTC 2 cut(s) 275, 341
BsmFI GGGAC 2 cut(s) 122, 798
BsnI GGCC 3 cut(s) 36, 66, 514
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp143I GATC 3 cut(s) 108, 342, 1001
Bsp68I TCGCGA 1 cut(s) 915
BspACI CCGC 7 cut(s) 31, 33, 150, 511, 539, 817, 830
BspANI GGCC 3 cut(s) 36, 66, 514
BspCNI CTCAG 3 cut(s) 388, 490, 715
BspFNI CGCG 2 cut(s) 33, 915
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 29
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 2 cut(s) 571, 1004
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 4 cut(s) 31, 98, 600, 601
BssMI GATC 3 cut(s) 108, 342, 1001
BssNI GRCGYC 1 cut(s) 955
Bst2UI CCWGG 3 cut(s) 99, 215, 602
Bst4CI ACNGT 7 cut(s) 43, 269, 356, 372, 587, 763, 1132
Bst6I CTCTTC 2 cut(s) 302, 966
BstACI GRCGYC 1 cut(s) 955
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 466
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 562, 650
BstDEI CTNAG 4 cut(s) 363, 375, 477, 723
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 2 cut(s) 33, 915
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 111, 345, 1004
BstMAI GTCTC 3 cut(s) 275, 341, 378
BstMBI GATC 3 cut(s) 108, 342, 1001
BstMWI GCNNNNNNNGC 9 cut(s) 174, 210, 331, 431, 466, 482, 566, 879, 1025
BstNI CCWGG 3 cut(s) 99, 215, 602
BstNSI RCATGY 2 cut(s) 442, 813
BstSCI CCNGG 3 cut(s) 97, 213, 600
BstSFI CTRYAG 2 cut(s) 368, 1029
BstUI CGCG 2 cut(s) 33, 915
BstV1I GCAGC 3 cut(s) 249, 632, 806
BstV2I GAAGAC 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 950
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 3 cut(s) 36, 66, 514
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 4 cut(s) 592, 747, 759, 779
BtuMI TCGCGA 1 cut(s) 915
Cac8I GCNNGC 3 cut(s) 175, 562, 650
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 34
CseI GACGC 2 cut(s) 124, 323
Csp6I GTAC 1 cut(s) 606
CviAII CATG 3 cut(s) 340, 439, 810
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 4 cut(s) 363, 375, 477, 723
DpnI GATC 3 cut(s) 110, 344, 1003
DpnII GATC 3 cut(s) 108, 342, 1001
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 302, 966
EarI CTCTTC 2 cut(s) 302, 966
EciI GGCGGA 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 520, 847
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 491, 803
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 3 cut(s) 97, 213, 600
EcoRV GATATC 2 cut(s) 520, 847
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 275, 341
FaeI CATG 3 cut(s) 343, 442, 813
FaqI GGGAC 2 cut(s) 122, 798
FatI CATG 3 cut(s) 339, 438, 809
FauI CCCGC 2 cut(s) 823, 824
FbaI TGATCA 2 cut(s) 108, 342
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 5 cut(s) 34, 263, 512, 646, 820
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 34, 263, 512, 646, 820
GlaI GCGC 1 cut(s) 19
GluI GCNGC 5 cut(s) 34, 263, 512, 646, 820
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 3 cut(s) 36, 66, 514
HapII CCGG 2 cut(s) 153, 207
HgaI GACGC 2 cut(s) 124, 323
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 955
Hin1II CATG 3 cut(s) 343, 442, 813
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 6 cut(s) 182, 348, 612, 766, 917, 1034
HpaII CCGG 2 cut(s) 153, 207
HphI GGTGA 2 cut(s) 70, 182
Hpy166II GTNNAC 2 cut(s) 223, 953
Hpy188I TCNGA 7 cut(s) 253, 347, 378, 445, 480, 922, 1114
Hpy188III TCNNGA 8 cut(s) 25, 139, 196, 272, 289, 340, 866, 914
Hpy8I GTNNAC 2 cut(s) 223, 953
HpyAV CCTTC 7 cut(s) 306, 336, 672, 778, 863, 1053, 1067
HpyCH4III ACNGT 7 cut(s) 43, 269, 356, 372, 587, 763, 1132
HpyCH4IV ACGT 1 cut(s) 955
HpyF10VI GCNNNNNNNGC 9 cut(s) 174, 210, 331, 431, 466, 482, 566, 879, 1025
HpyF3I CTNAG 4 cut(s) 363, 375, 477, 723
HpySE526I ACGT 1 cut(s) 955
Hsp92I GRCGYC 1 cut(s) 955
Hsp92II CATG 3 cut(s) 343, 442, 813
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 108, 342
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 3 cut(s) 108, 342, 1001
LmnI GCTCC 3 cut(s) 209, 236, 719
Lsp1109I GCAGC 3 cut(s) 249, 632, 806
LweI GCATC 2 cut(s) 160, 869
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 6 cut(s) 155, 188, 319, 581, 737, 763
MalI GATC 3 cut(s) 110, 344, 1003
MboI GATC 3 cut(s) 108, 342, 1001
MboII GAAGA 3 cut(s) 319, 391, 983
MhlI GDGCHC 2 cut(s) 126, 206
MluCI AATT 9 cut(s) 8, 406, 412, 544, 576, 590, 655, 861, 1121
MlyI GAGTC 4 cut(s) 342, 606, 760, 911
MmeI TCCRAC 2 cut(s) 231, 423
MnlI CCTC 8 cut(s) 83, 86, 203, 415, 439, 667, 718, 835
MseI TTAA 3 cut(s) 636, 825, 960
MspA1I CMGCKG 5 cut(s) 33, 511, 645, 686, 819
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 153, 207
MspR9I CCNGG 3 cut(s) 99, 215, 602
MvaI CCWGG 3 cut(s) 99, 215, 602
MvnI CGCG 2 cut(s) 33, 915
MwoI GCNNNNNNNGC 9 cut(s) 174, 210, 331, 431, 466, 482, 566, 879, 1025
NdeII GATC 3 cut(s) 108, 342, 1001
NlaIII CATG 3 cut(s) 343, 442, 813
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 3 cut(s) 188, 581, 763
NruI TCGCGA 1 cut(s) 915
NspI RCATGY 2 cut(s) 442, 813
NspV TTCGAA 2 cut(s) 47, 180
PagI TCATGA 1 cut(s) 339
PasI CCCWGGG 1 cut(s) 601
PciI ACATGT 1 cut(s) 438
PfeI GAWTC 2 cut(s) 182, 1034
PkrI GCNGC 5 cut(s) 35, 264, 513, 647, 821
PleI GAGTC 4 cut(s) 342, 606, 760, 911
PpsI GAGTC 4 cut(s) 342, 606, 760, 911
PscI ACATGT 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 97, 213, 600
PspGI CCWGG 3 cut(s) 97, 213, 600
PspN4I GGNNCC 1 cut(s) 29
PvuII CAGCTG 2 cut(s) 645, 686
RruI TCGCGA 1 cut(s) 915
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
SacII CCGCGG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 636, 825, 960
SatI GCNGC 5 cut(s) 34, 263, 512, 646, 820
Sau3AI GATC 3 cut(s) 108, 342, 1001
SchI GAGTC 4 cut(s) 342, 606, 760, 911
ScrFI CCNGG 3 cut(s) 99, 215, 602
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 2 cut(s) 160, 869
SfcI CTRYAG 2 cut(s) 368, 1029
Sfr303I CCGCGG 1 cut(s) 34
SfuI TTCGAA 2 cut(s) 47, 180
SgrBI CCGCGG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 194, 959
SmoI CTYRAG 2 cut(s) 194, 959
Sse9I AATT 9 cut(s) 8, 406, 412, 544, 576, 590, 655, 861, 1121
SsiI CCGC 7 cut(s) 31, 33, 150, 511, 539, 817, 830
StyD4I CCNGG 3 cut(s) 97, 213, 600
TaaI ACNGT 7 cut(s) 43, 269, 356, 372, 587, 763, 1132
TaiI ACGT 1 cut(s) 958
TaqI TCGA 5 cut(s) 47, 180, 273, 290, 744
TasI AATT 9 cut(s) 8, 406, 412, 544, 576, 590, 655, 861, 1121
TauI GCSGC 2 cut(s) 36, 514
TfiI GAWTC 2 cut(s) 182, 1034
Tru1I TTAA 3 cut(s) 636, 825, 960
Tru9I TTAA 3 cut(s) 636, 825, 960
TscAI CASTG 4 cut(s) 592, 754, 766, 786
TseFI GTSAC 3 cut(s) 188, 581, 763
TseI GCWGC 3 cut(s) 262, 645, 819
Tsp45I GTSAC 3 cut(s) 188, 581, 763
TspRI CASTG 4 cut(s) 592, 754, 766, 786
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 2 cut(s) 544, 655
XceI RCATGY 2 cut(s) 442, 813
XmiI GTMKAC 1 cut(s) 222
ZraI GACGTC 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.