Rroxscaffold_7G00172910

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
13026957 .. 13031546
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172910.1

Sequence Viewer

Length: 1446 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAACCGCGGCCTGACCGTTTCGAAACTTCCAGAGAAAGGCCGTTGCCTCCTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTGTGCGTCCCGAACAACTCCGCCGGTAACTCCAAGTGCGATGCTTGCTTCGAATCCAGTCACCTCAAGAAGTGCTCCGGTTGCCAGGTTGTCTACTACTGCTCCAGCACTTGCCAGAAGTCGGAATGGAAGCTGCACCGTCTCGAATGTCAAGCTCTCTCGAAGCTTCCAAAGGAGAAGAGAAGGGCTGTTACGCCTTCTCTGCGTCTCATGATCAGACTTTACTGCCGTTCAAAGCTACAGTCTCAGAAGACTATTCCTACTTCTGCTATGGACAATTACAGTTTGGTGGAGGCCTTGGTGGCTCACATGTCGGAGGTTGATGAGAAGCAAATGGTGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCTGATATCAATGTAAAAGAGATTGCAGAGAATTTCTCAAAGTTTGCTTGCAATGCACACACAATTTGTGACAGTGAATTGAAACCCCTGGGTACAGGACTCTATCCTGTCATATCAGTCATTAACCACAGCTGCCTGCCGAATTCTGTTCTATTATTTGAGGGAAGGTCAGCTGTTGTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGATAAGTTACATCGACACTGCTGGAAGCACTGTGACTCGGCAAAAGGCACTGAAGGAACAATACCTTTTTACCTGTGCATGTCCCCGCTGCATTAAAGCGGGTCATTACGAGGATATCCAAGAAAGTGCAATTCTGGAAGGCTACCGATGCAAGGATAATAAATGTGATGGTTTTTTGCTTCGCGACTCTGATGACAAGGGATTTATATGCCAACAATGCGGACGTCTTAAGAGCAAAGAAGAGATAATAGAGATGGAAAGTGAAATAAGATCATTGCAGGAAAAGGCTATTATAGCTGTAGAATCTGCACCGTCTATCACTTACCAGGAAGTTATAGCCATCTTGAAGGCAATGGAGACACTCCAGAGGTATCTATGTCATGATTTCTGCATCTATTTGATCCCAACTTGGGAGGAGCTTATAAAGAATTTGATGAAGGCAGAAGACTGGAGTGAAGCTCTAGCATATTGCAGATTGACTATTCCAGTGTATCAAAGAGTATATCCAGGCTTTCATCCTTCTCTTGGATTGCAATACTATACCTGTGGAAAGCTTGAATGGTTACTTGGAGAAACTGATGACGCTGTGAAATCTCTGACCAAGGCAGTAGATATACTGCGGATTACTCATGGGACAAGTACACCCTTTATGAAGGATCTTTTCAGGAGGTTGGAGGAGGCACGAGCTGAAGCGTTCATCAATGGAGTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

54.29

Weight (kDa)

6.58

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 247 2.7e-10 SET domain
zf-MYND PF01753 56 - 93 2.1e-09 MYND finger
TPR_12 PF13424 381 - 451 2.8e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
AatII GACGTC 1 cut(s) 958
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 33, 915
AciI CCGC 7 cut(s) 31, 33, 150, 817, 830, 951, 1351
AclWI GGATC 2 cut(s) 1126, 1395
AcsI RAATTY 3 cut(s) 544, 655, 1159
AcuI CTGAAG 3 cut(s) 491, 803, 1440
AcyI GRCGYC 1 cut(s) 955
AfaI GTAC 2 cut(s) 607, 1372
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 5 cut(s) 62, 250, 883, 1141, 1256
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 4 cut(s) 363, 595, 1078, 1289
AjnI CCWGG 5 cut(s) 97, 213, 600, 1056, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 1281, 1313
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 4 cut(s) 275, 341, 378, 1082
AlwI GGATC 2 cut(s) 1126, 1395
Ama87I CYCGRG 1 cut(s) 23
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 4 cut(s) 34, 64, 423, 512
ApeKI GCWGC 3 cut(s) 262, 645, 819
ApoI RAATTY 3 cut(s) 544, 655, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 70, 182
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 4 cut(s) 304, 336, 776, 808
BauI CACGAG 1 cut(s) 1413
BbsI GAAGAC 2 cut(s) 386, 1182
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 249, 632, 806
BccI CCATC 4 cut(s) 475, 893, 979, 1079
BceAI ACGGC 2 cut(s) 51, 342
BciT130I CCWGG 5 cut(s) 99, 215, 602, 1058, 1239
BclI TGATCA 2 cut(s) 108, 342
BcoDI GTCTC 4 cut(s) 275, 341, 378, 1082
BfaI CTAG 1 cut(s) 1193
BfmI CTRYAG 2 cut(s) 368, 1029
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 959
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 4 cut(s) 34, 263, 646, 820
BlsI GCNGC 4 cut(s) 35, 264, 647, 821
Bme1390I CCNGG 5 cut(s) 99, 215, 602, 1058, 1239
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 5 cut(s) 99, 215, 602, 1058, 1239
BmsI GCATC 3 cut(s) 160, 869, 1131
BpiI GAAGAC 2 cut(s) 386, 1182
BplI GAGNNNNNCTC 4 cut(s) 533, 565, 1174, 1206
BpmI CTGGAG 3 cut(s) 217, 1079, 1201
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 955
BsaJI CCNNGG 6 cut(s) 31, 98, 426, 600, 601, 1332
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 711, 741
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 250, 883, 1141, 1256
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 186, 1184, 1217
Bse3DI GCAATG 3 cut(s) 571, 1004, 1089
BseBI CCWGG 5 cut(s) 99, 215, 602, 1058, 1239
BseDI CCNNGG 6 cut(s) 31, 98, 426, 600, 601, 1332
BseGI GGATG 1 cut(s) 1246
BseLI CCNNNNNNNGG 5 cut(s) 62, 250, 883, 1141, 1256
BseMI GCAATG 3 cut(s) 571, 1004, 1089
BseMII CTCAG 3 cut(s) 389, 491, 714
BseNI ACTGG 3 cut(s) 186, 1184, 1217
BseRI GAGGAG 3 cut(s) 65, 1160, 1421
BseXI GCAGC 3 cut(s) 249, 632, 806
BsgI GTGCAG 2 cut(s) 248, 1023
Bsh1236I CGCG 2 cut(s) 33, 915
BshFI GGCC 4 cut(s) 36, 66, 425, 514
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 153, 207
BslFI GGGAC 3 cut(s) 122, 798, 1378
BslI CCNNNNNNNGG 5 cut(s) 62, 250, 883, 1141, 1256
BsmAI GTCTC 4 cut(s) 275, 341, 378, 1082
BsmBI CGTCTC 2 cut(s) 275, 341
BsmFI GGGAC 3 cut(s) 122, 798, 1378
BsnI GGCC 4 cut(s) 36, 66, 425, 514
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp143I GATC 5 cut(s) 108, 342, 1001, 1131, 1387
Bsp68I TCGCGA 1 cut(s) 915
BspACI CCGC 7 cut(s) 31, 33, 150, 817, 830, 951, 1351
BspANI GGCC 4 cut(s) 36, 66, 425, 514
BspCNI CTCAG 3 cut(s) 388, 490, 715
BspFNI CGCG 2 cut(s) 33, 915
BspHI TCATGA 2 cut(s) 339, 1111
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 1126, 1395
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 3 cut(s) 571, 1004, 1089
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 3 cut(s) 186, 1184, 1217
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 31, 98, 426, 600, 601, 1332
BssMI GATC 5 cut(s) 108, 342, 1001, 1131, 1387
BssNI GRCGYC 1 cut(s) 955
BssSI CACGAG 1 cut(s) 1413
BssT1I CCWWGG 2 cut(s) 426, 1332
Bst2BI CACGAG 1 cut(s) 1413
Bst2UI CCWGG 5 cut(s) 99, 215, 602, 1058, 1239
Bst4CI ACNGT 7 cut(s) 43, 269, 372, 413, 587, 763, 1044
Bst6I CTCTTC 2 cut(s) 302, 966
BstACI GRCGYC 1 cut(s) 955
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 466
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 562, 650
BstDEI CTNAG 3 cut(s) 375, 477, 723
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 1246
BstFNI CGCG 2 cut(s) 33, 915
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 5 cut(s) 111, 345, 1004, 1134, 1390
BstMAI GTCTC 4 cut(s) 275, 341, 378, 1082
BstMBI GATC 5 cut(s) 108, 342, 1001, 1131, 1387
BstNI CCWGG 5 cut(s) 99, 215, 602, 1058, 1239
BstNSI RCATGY 2 cut(s) 442, 813
BstSCI CCNGG 5 cut(s) 97, 213, 600, 1056, 1237
BstSFI CTRYAG 2 cut(s) 368, 1029
BstUI CGCG 2 cut(s) 33, 915
BstV1I GCAGC 3 cut(s) 249, 632, 806
BstV2I GAAGAC 2 cut(s) 386, 1182
BstX2I RGATCY 1 cut(s) 1387
BstYI RGATCY 1 cut(s) 1387
BsuRI GGCC 4 cut(s) 36, 66, 425, 514
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 1246
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 6 cut(s) 515, 592, 747, 759, 779, 1224
BtuMI TCGCGA 1 cut(s) 915
Cac8I GCNNGC 3 cut(s) 175, 562, 650
CciI TCATGA 2 cut(s) 339, 1111
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 34
CseI GACGC 3 cut(s) 124, 323, 1322
Csp6I GTAC 2 cut(s) 606, 1371
CviAII CATG 5 cut(s) 340, 439, 810, 1112, 1361
CviQI GTAC 2 cut(s) 606, 1371
DdeI CTNAG 3 cut(s) 375, 477, 723
DpnI GATC 5 cut(s) 110, 344, 1003, 1133, 1389
DpnII GATC 5 cut(s) 108, 342, 1001, 1131, 1387
Eam1104I CTCTTC 2 cut(s) 302, 966
EarI CTCTTC 2 cut(s) 302, 966
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 426, 1332
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 520, 847
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 3 cut(s) 491, 803, 1440
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 5 cut(s) 97, 213, 600, 1056, 1237
EcoRV GATATC 2 cut(s) 520, 847
EcoT14I CCWWGG 2 cut(s) 426, 1332
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 426, 1332
Esp3I CGTCTC 2 cut(s) 275, 341
FaeI CATG 5 cut(s) 343, 442, 813, 1115, 1364
FaqI GGGAC 3 cut(s) 122, 798, 1378
FatI CATG 5 cut(s) 339, 438, 809, 1111, 1360
FauI CCCGC 2 cut(s) 823, 824
FbaI TGATCA 2 cut(s) 108, 342
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 34, 263, 646, 820
FokI GGATG 1 cut(s) 1233
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 34, 263, 646, 820
FspBI CTAG 1 cut(s) 1193
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 34, 263, 646, 820
GsuI CTGGAG 3 cut(s) 217, 1079, 1201
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 36, 66, 425, 514
HapII CCGG 2 cut(s) 153, 207
HgaI GACGC 3 cut(s) 124, 323, 1322
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 955
Hin1II CATG 5 cut(s) 343, 442, 813, 1115, 1364
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 2 cut(s) 293, 1283
HinfI GANTC 5 cut(s) 182, 612, 766, 917, 1034
HpaII CCGG 2 cut(s) 153, 207
HphI GGTGA 2 cut(s) 70, 182
Hpy166II GTNNAC 2 cut(s) 223, 1373
Hpy188I TCNGA 7 cut(s) 253, 347, 378, 445, 480, 922, 1329
Hpy8I GTNNAC 2 cut(s) 223, 1373
HpyAV CCTTC 9 cut(s) 306, 336, 672, 778, 863, 1072, 1162, 1260, 1378
HpyCH4III ACNGT 7 cut(s) 43, 269, 372, 413, 587, 763, 1044
HpyCH4IV ACGT 1 cut(s) 955
HpyF3I CTNAG 3 cut(s) 375, 477, 723
HpySE526I ACGT 1 cut(s) 955
Hsp92I GRCGYC 1 cut(s) 955
Hsp92II CATG 5 cut(s) 343, 442, 813, 1115, 1364
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 108, 342
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 5 cut(s) 108, 342, 1001, 1131, 1387
LmnI GCTCC 4 cut(s) 209, 236, 719, 1147
Lsp1109I GCAGC 3 cut(s) 249, 632, 806
LweI GCATC 3 cut(s) 160, 869, 1131
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 7 cut(s) 155, 188, 319, 581, 737, 763, 1293
MalI GATC 5 cut(s) 110, 344, 1003, 1133, 1389
MboI GATC 5 cut(s) 108, 342, 1001, 1131, 1387
MboII GAAGA 4 cut(s) 319, 391, 983, 1187
MflI RGATCY 1 cut(s) 1387
MhlI GDGCHC 2 cut(s) 126, 206
MluCI AATT 8 cut(s) 8, 406, 544, 576, 590, 655, 861, 1159
MlyI GAGTC 3 cut(s) 606, 760, 911
MmeI TCCRAC 3 cut(s) 231, 423, 1383
MseI TTAA 3 cut(s) 636, 825, 960
MspA1I CMGCKG 4 cut(s) 33, 645, 686, 819
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 153, 207
MspR9I CCNGG 5 cut(s) 99, 215, 602, 1058, 1239
MvaI CCWGG 5 cut(s) 99, 215, 602, 1058, 1239
MvnI CGCG 2 cut(s) 33, 915
NdeII GATC 5 cut(s) 108, 342, 1001, 1131, 1387
NlaIII CATG 5 cut(s) 343, 442, 813, 1115, 1364
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 3 cut(s) 188, 581, 763
NruI TCGCGA 1 cut(s) 915
NspI RCATGY 2 cut(s) 442, 813
NspV TTCGAA 2 cut(s) 47, 180
PagI TCATGA 2 cut(s) 339, 1111
PasI CCCWGGG 1 cut(s) 601
PceI AGGCCT 1 cut(s) 425
PciI ACATGT 1 cut(s) 438
PfeI GAWTC 2 cut(s) 182, 1034
PkrI GCNGC 4 cut(s) 35, 264, 647, 821
PleI GAGTC 3 cut(s) 606, 760, 911
PpsI GAGTC 3 cut(s) 606, 760, 911
PscI ACATGT 1 cut(s) 438
PsiI TTATAA 1 cut(s) 1154
Psp6I CCWGG 5 cut(s) 97, 213, 600, 1056, 1237
PspGI CCWGG 5 cut(s) 97, 213, 600, 1056, 1237
PspN4I GGNNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 1387
PvuII CAGCTG 2 cut(s) 645, 686
RruI TCGCGA 1 cut(s) 915
RsaI GTAC 2 cut(s) 607, 1372
RsaNI GTAC 2 cut(s) 606, 1371
SacII CCGCGG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 636, 825, 960
SatI GCNGC 4 cut(s) 34, 263, 646, 820
Sau3AI GATC 5 cut(s) 108, 342, 1001, 1131, 1387
SchI GAGTC 3 cut(s) 606, 760, 911
ScrFI CCNGG 5 cut(s) 99, 215, 602, 1058, 1239
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 3 cut(s) 160, 869, 1131
SfcI CTRYAG 2 cut(s) 368, 1029
Sfr303I CCGCGG 1 cut(s) 34
SfuI TTCGAA 2 cut(s) 47, 180
SgrBI CCGCGG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 194, 959
SmoI CTYRAG 2 cut(s) 194, 959
Sse9I AATT 8 cut(s) 8, 406, 544, 576, 590, 655, 861, 1159
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 7 cut(s) 31, 33, 150, 817, 830, 951, 1351
SspMI CTAG 1 cut(s) 1193
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 5 cut(s) 97, 213, 600, 1056, 1237
StyI CCWWGG 2 cut(s) 426, 1332
TaaI ACNGT 7 cut(s) 43, 269, 372, 413, 587, 763, 1044
TaiI ACGT 1 cut(s) 958
TaqI TCGA 5 cut(s) 47, 180, 273, 290, 744
TasI AATT 8 cut(s) 8, 406, 544, 576, 590, 655, 861, 1159
TatI WGTACW 1 cut(s) 1370
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 182, 1034
Tru1I TTAA 3 cut(s) 636, 825, 960
Tru9I TTAA 3 cut(s) 636, 825, 960
TscAI CASTG 6 cut(s) 515, 592, 754, 766, 786, 1224
TseFI GTSAC 3 cut(s) 188, 581, 763
TseI GCWGC 3 cut(s) 262, 645, 819
Tsp45I GTSAC 3 cut(s) 188, 581, 763
TspDTI ATGAA 4 cut(s) 1181, 1235, 1397, 1417
TspRI CASTG 6 cut(s) 515, 592, 754, 766, 786, 1224
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 3 cut(s) 544, 655, 1159
XceI RCATGY 2 cut(s) 442, 813
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 1193
ZraI GACGTC 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.