RchiOBHm_Chr6g0294881

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006602
Physical Location & Seq
Forward (+)
57063399 .. 57067916
4518 bp
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UTR
Exon/CDS
Intron
PRQ26466

Sequence Viewer

Length: 1464 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCGAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCACCGAAGACTTCTATCCAGGGGAAGTGATCATAAGTCAAGAGCCCTATGTGTGCGTCCCAAAAAACTCCATTGCTGACCACAAGTGCGATGCTTGCTTCGAATCCAGTAACCTCAAGAAGTGCTCCGGTTGCAAGATTGTGTACTACTGTTCCAGCACCTGCCAGAAGTCTGAATGGAAACTGCACCGTCTCGAATGTGAAGCTTTCTCGAAGCTTCCCATTGAGTTCCGTCATCAAATTACACCTCCTATTCGTCTCACGATCAGACTCCACTGCCGTTCAAAATTACAATCTCAGAAGACTATTCCTACTTCTGCTATGGACAACTACGATTTGGTGAAGGCTTTGGTGGCTCACATGTCAAAGATTGATGATGAGCAAAGGTGGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGTATTCAATGCACACACAATTTATGACAGTGGATTAAAGCACTTGGGTAAAGGACTGTATCCTGTCATTTCAATCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTAACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCACGAAAGTGCATTTCTGGAAGGCTACCGATGCACACATAATGAATGCGACGGCCTTTTGCTTTGCAACTCTGATGATAATGGATTCATATGCCAACAATGTGGACGTCTTAAGAGCAAAAAAGAGATACAAGAGGTGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATTGCTGCAGAGTCCGCAAGCTCTTATATCACTTATCAGGAAGTAATAGCTCTGTATAAGGCAATTGAGACACTCCAAAGGCAACTGTTTAATCCTTGCTGCATCTATTTGATCCCAACTTGGGAGGGGATTATAGAGAATTCAATGAAGCTGGAAGACTGGAGTGAAGCTCTAGCATATTGCAGATTGACCATTGCAGTGTATCAAAGAGTATATCGGAACTTTCAATCCTTTCATCCTTCACTTGGATTGCAATACTATACCTGTGGGAAGCTTGAAGGGGTACTTGGAGAGGCTGAGAATGCTGTGAAATCTCTGACCAAGGCAGTCGATATACTGCAGATTACTTATGGGACAAGTACACCCTTCATGAAGGATCTTTTCAGTATGTTGGAGGAGCAACGTGAAATTGAAGCTCTCATCAATGGAACAGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

487

Amino Acids

55.36

Weight (kDa)

6.48

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 247 5e-11 SET domain
zf-MYND PF01753 56 - 93 4.8e-10 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
AatII GACGTC 1 cut(s) 958
Acc36I ACCTGC 2 cut(s) 248, 812
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 33, 817, 1038
AclWI GGATC 2 cut(s) 1129, 1407
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 1162
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 955
AfaI GTAC 3 cut(s) 224, 1308, 1384
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 62, 1144, 1268
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 2 cut(s) 438, 809
AgsI TTSAA 8 cut(s) 363, 552, 565, 630, 1167, 1250, 1301, 1436
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 1293, 1325
AleI CACNNNNGTG 1 cut(s) 855
AloI GAACNNNNNNTCC 2 cut(s) 1235, 1267
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 275, 341, 1085
AlwI GGATC 2 cut(s) 1129, 1407
AlwNI CAGNNNCTG 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 4 cut(s) 34, 64, 512, 901
ApeKI GCWGC 4 cut(s) 645, 819, 1028, 1122
ApoI RAATTY 1 cut(s) 1162
AspLEI GCGC 2 cut(s) 20, 781
AsuHPI GGTGA 2 cut(s) 70, 430
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BalI TGGCCA 1 cut(s) 514
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 3 cut(s) 93, 386, 1185
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 4 cut(s) 632, 806, 1015, 1109
BccI CCATC 2 cut(s) 475, 550
BceAI ACGGC 3 cut(s) 51, 342, 916
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 275, 341, 1085
BfaI CTAG 2 cut(s) 1196, 1462
BfmI CTRYAG 2 cut(s) 1029, 1361
BfoI RGCGCY 2 cut(s) 21, 782
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 2 cut(s) 248, 812
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
BlsI GCNGC 5 cut(s) 35, 647, 821, 1030, 1124
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 4 cut(s) 81, 160, 869, 1134
BpiI GAAGAC 3 cut(s) 93, 386, 1185
BplI GAGNNNNNCTC 2 cut(s) 1177, 1209
BpmI CTGGAG 1 cut(s) 1204
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 955
BsaJI CCNNGG 2 cut(s) 98, 1344
BsaWI WCCGGW 2 cut(s) 55, 206
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 1144, 1268
Bse1I ACTGG 2 cut(s) 186, 1187
Bse3DI GCAATG 3 cut(s) 150, 1004, 1215
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 98, 1344
BseGI GGATG 1 cut(s) 1258
BseLI CCNNNNNNNGG 3 cut(s) 62, 1144, 1268
BseMI GCAATG 3 cut(s) 150, 1004, 1215
BseMII CTCAG 4 cut(s) 389, 491, 714, 1311
BseNI ACTGG 2 cut(s) 186, 1187
BseRI GAGGAG 1 cut(s) 1433
BseXI GCAGC 4 cut(s) 632, 806, 1015, 1109
BsgI GTGCAG 2 cut(s) 248, 790
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 36, 66, 514, 903
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 56, 207
BslFI GGGAC 3 cut(s) 122, 798, 1390
BslI CCNNNNNNNGG 3 cut(s) 62, 1144, 1268
BsmAI GTCTC 3 cut(s) 275, 341, 1085
BsmBI CGTCTC 2 cut(s) 275, 341
BsmFI GGGAC 3 cut(s) 122, 798, 1390
BsmI GAATGC 2 cut(s) 899, 1330
BsnI GGCC 4 cut(s) 36, 66, 514, 903
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 4 cut(s) 108, 342, 1134, 1399
BspACI CCGC 3 cut(s) 33, 817, 1038
BspANI GGCC 4 cut(s) 36, 66, 514, 903
BspCNI CTCAG 4 cut(s) 388, 490, 715, 1312
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 2 cut(s) 633, 1392
BspMAI CTGCAG 2 cut(s) 1033, 1365
BspMI ACCTGC 2 cut(s) 248, 812
BspPI GGATC 2 cut(s) 1129, 1407
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 3 cut(s) 150, 1004, 1215
BsrI ACTGG 2 cut(s) 186, 1187
BssECI CCNNGG 2 cut(s) 98, 1344
BssMI GATC 4 cut(s) 108, 342, 1134, 1399
BssNI GRCGYC 1 cut(s) 955
BssT1I CCWWGG 1 cut(s) 1344
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
BstACI GRCGYC 1 cut(s) 955
BstAFI CTTAAG 1 cut(s) 959
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 650, 1042
BstDEI CTNAG 4 cut(s) 375, 477, 723, 1320
BstF5I GGATG 1 cut(s) 1258
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 21, 782
BstHHI GCGC 2 cut(s) 20, 781
BstKTI GATC 4 cut(s) 111, 345, 1137, 1402
BstMAI GTCTC 3 cut(s) 275, 341, 1085
BstMBI GATC 4 cut(s) 108, 342, 1134, 1399
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 442, 813
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 2 cut(s) 1029, 1361
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 632, 806, 1015, 1109
BstV2I GAAGAC 3 cut(s) 93, 386, 1185
BstX2I RGATCY 1 cut(s) 1399
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 1 cut(s) 1399
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 36, 66, 514, 903
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 1258
BtsI GCAGTG 2 cut(s) 352, 1227
BtsIMutI CAGTG 5 cut(s) 352, 515, 592, 759, 1227
BveI ACCTGC 2 cut(s) 248, 812
Cac8I GCNNGC 3 cut(s) 175, 650, 1042
CaiI CAGNNNCTG 1 cut(s) 240
CciI TCATGA 2 cut(s) 633, 1392
CfoI GCGC 2 cut(s) 20, 781
CseI GACGC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 223, 1307, 1383
CviAII CATG 4 cut(s) 439, 634, 810, 1393
CviQI GTAC 3 cut(s) 223, 1307, 1383
DdeI CTNAG 4 cut(s) 375, 477, 723, 1320
DpnI GATC 4 cut(s) 110, 344, 1136, 1401
DpnII GATC 4 cut(s) 108, 342, 1134, 1399
EaeI YGGCCR 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 1344
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 520, 847
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 1162
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 2 cut(s) 520, 847
EcoT14I CCWWGG 1 cut(s) 1344
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 1344
Esp3I CGTCTC 2 cut(s) 275, 341
FaeI CATG 4 cut(s) 442, 637, 813, 1396
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FaqI GGGAC 3 cut(s) 122, 798, 1390
FatI CATG 4 cut(s) 438, 633, 809, 1392
FauI CCCGC 1 cut(s) 824
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
FokI GGATG 1 cut(s) 1245
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
FspBI CTAG 2 cut(s) 1196, 1462
GlaI GCGC 2 cut(s) 19, 780
GluI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
GsuI CTGGAG 1 cut(s) 1204
HaeII RGCGCY 2 cut(s) 21, 782
HaeIII GGCC 4 cut(s) 36, 66, 514, 903
HapII CCGG 2 cut(s) 56, 207
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 20, 781
Hin1I GRCGYC 1 cut(s) 955
Hin1II CATG 4 cut(s) 442, 637, 813, 1396
Hin6I GCGC 2 cut(s) 18, 779
HinP1I GCGC 2 cut(s) 18, 779
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 3 cut(s) 282, 293, 1295
HinfI GANTC 6 cut(s) 28, 49, 182, 348, 933, 1034
HpaII CCGG 2 cut(s) 56, 207
HphI GGTGA 2 cut(s) 70, 430
Hpy166II GTNNAC 4 cut(s) 223, 732, 953, 1385
Hpy188I TCNGA 7 cut(s) 253, 347, 378, 480, 922, 1242, 1341
Hpy8I GTNNAC 4 cut(s) 223, 732, 953, 1385
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 6 cut(s) 415, 863, 1272, 1295, 1390, 1399
HpyCH4III ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
HpyCH4IV ACGT 2 cut(s) 955, 1426
HpyF3I CTNAG 4 cut(s) 375, 477, 723, 1320
HpySE526I ACGT 2 cut(s) 955, 1426
Hsp92I GRCGYC 1 cut(s) 955
Hsp92II CATG 4 cut(s) 442, 637, 813, 1396
HspAI GCGC 2 cut(s) 18, 779
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 342, 1134, 1399
LmnI GCTCC 3 cut(s) 209, 719, 1420
Lsp1109I GCAGC 4 cut(s) 632, 806, 1015, 1109
LweI GCATC 4 cut(s) 81, 160, 869, 1134
MaeI CTAG 2 cut(s) 1196, 1462
MaeII ACGT 2 cut(s) 955, 1426
MaeIII GTNAC 3 cut(s) 188, 737, 763
MalI GATC 4 cut(s) 110, 344, 1136, 1401
MboI GATC 4 cut(s) 108, 342, 1134, 1399
MboII GAAGA 6 cut(s) 44, 67, 98, 391, 683, 1190
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 1 cut(s) 1399
MhlI GDGCHC 2 cut(s) 126, 206
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 8 cut(s) 8, 318, 365, 576, 655, 1086, 1162, 1431
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 342, 1043
MmeI TCCRAC 2 cut(s) 733, 1395
Mox20I TGGCCA 1 cut(s) 514
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 514
MseI TTAA 4 cut(s) 593, 825, 960, 1113
MslI CAYNNNNRTG 3 cut(s) 827, 855, 1220
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 3 cut(s) 645, 686, 819
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 56, 207
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 2 cut(s) 899, 1330
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 33
NdeI CATATG 1 cut(s) 938
NdeII GATC 4 cut(s) 108, 342, 1134, 1399
NlaIII CATG 4 cut(s) 442, 637, 813, 1396
NmeAIII GCCGAG 1 cut(s) 748
NspI RCATGY 2 cut(s) 442, 813
NspV TTCGAA 2 cut(s) 47, 180
OliI CACNNNNGTG 1 cut(s) 855
PagI TCATGA 2 cut(s) 633, 1392
PaqCI CACCTGC 1 cut(s) 248
PciI ACATGT 2 cut(s) 438, 809
PctI GAATGC 2 cut(s) 899, 1330
PfeI GAWTC 4 cut(s) 28, 49, 182, 933
PkrI GCNGC 5 cut(s) 35, 647, 821, 1030, 1124
PleI GAGTC 2 cut(s) 342, 1042
PpsI GAGTC 2 cut(s) 342, 1042
PscI ACATGT 2 cut(s) 438, 809
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PstI CTGCAG 2 cut(s) 1033, 1365
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 1399
PvuII CAGCTG 2 cut(s) 645, 686
RsaI GTAC 3 cut(s) 224, 1308, 1384
RsaNI GTAC 3 cut(s) 223, 1307, 1383
RseI CAYNNNNRTG 3 cut(s) 827, 855, 1220
SaqAI TTAA 4 cut(s) 593, 825, 960, 1113
SatI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
Sau3AI GATC 4 cut(s) 108, 342, 1134, 1399
SchI GAGTC 2 cut(s) 342, 1043
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 4 cut(s) 81, 160, 869, 1134
SfcI CTRYAG 2 cut(s) 1029, 1361
SfuI TTCGAA 2 cut(s) 47, 180
SmiMI CAYNNNNRTG 3 cut(s) 827, 855, 1220
SmlI CTYRAG 2 cut(s) 194, 959
SmoI CTYRAG 2 cut(s) 194, 959
Sse9I AATT 8 cut(s) 8, 318, 365, 576, 655, 1086, 1162, 1431
SsiI CCGC 3 cut(s) 33, 817, 1038
SspMI CTAG 2 cut(s) 1196, 1462
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 1344
TaaI ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
TaiI ACGT 2 cut(s) 958, 1429
TaqI TCGA 5 cut(s) 47, 180, 273, 290, 1353
TasI AATT 8 cut(s) 8, 318, 365, 576, 655, 1086, 1162, 1431
TatI WGTACW 2 cut(s) 222, 1382
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 28, 49, 182, 933
Tru1I TTAA 4 cut(s) 593, 825, 960, 1113
Tru9I TTAA 4 cut(s) 593, 825, 960, 1113
TscAI CASTG 5 cut(s) 359, 515, 592, 766, 1227
TseI GCWGC 4 cut(s) 645, 819, 1028, 1122
TspDTI ATGAA 7 cut(s) 650, 906, 925, 1184, 1247, 1381, 1409
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 5 cut(s) 359, 515, 592, 766, 1227
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 1 cut(s) 1162
XceI RCATGY 2 cut(s) 442, 813
XspI CTAG 2 cut(s) 1196, 1462
ZraI GACGTC 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.