Rh6CG374900

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006602
Physical Location & Seq
Forward (+)
56105703 .. 56109637
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG374900.1

Sequence Viewer

Length: 1203 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCGAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTGTGCGTCCCAAAAAACTCCATTGCTGACCACAAGTGCGATGCTTGCTTCGAATCCAGTAACCTCAAGAAGTGCTCCGGTTGCAAGATTGTGTACTACTGTTCCAGCACCTGCCAGAAGTCTGAATGGAAACTGCACCGTCTCGAATGTGAAGCTTTCTCGAAGCTTCCCATTGAGTTCCGTCATCAAATTACACCTCCTATTCGTCTCACGATCAGACTCCACTGCCGTTCAAAATTACAATCTCAGAAGACTATTCCTACTTCTGCTATGGACAACTACGATTTGGTGAAGGCTTTGGTGGCTCACATGTCAAAGATTGATGATGAGCAAAGGTGGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGCATTCAATGCACACACAATTTATGACAGTGGATTAAAGCATTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTAACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCACGAAAGTGCATTTCTGGAAGGCTACCGATGCACACATAATGAATGCGACGGCCTTTTGCTTTGCAACTCTGATGATAATGGATTCATATGCCAACAATGTGGACGTCTTAAGAGCAAAAAAGAGATACAAGAGGTGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATTGCTGCAGAGTCCGCAAGCTCTTATATCACTTACCAGGAAGTAATAGCTCTGTATAAGGCAATTGAGACACTCCAAAGTTCTGGCTTCTTCAAGTTGGTGGCCTCATGGAGTATATCGGAACTTTCAATCCTTTCATCCTTCACTTGGATTGCAATACTATACCTGTGGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

400

Amino Acids

45.3

Weight (kDa)

8.0

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 247 7.6e-12 SET domain
zf-MYND PF01753 56 - 93 3.7e-10 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
AatII GACGTC 1 cut(s) 958
Acc36I ACCTGC 2 cut(s) 248, 812
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 33, 817, 1038
AcoI YGGCCR 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 955
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 62, 1170
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 2 cut(s) 438, 809
AgsI TTSAA 5 cut(s) 363, 552, 565, 1117, 1152
AjnI CCWGG 2 cut(s) 97, 1059
AleI CACNNNNGTG 1 cut(s) 855
AloI GAACNNNNNNTCC 2 cut(s) 1137, 1169
AluBI AGCT 9 cut(s) 284, 295, 498, 645, 686, 722, 1044, 1073, 1199
AluI AGCT 9 cut(s) 284, 295, 498, 645, 686, 722, 1044, 1073, 1199
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 275, 341, 1085
AlwNI CAGNNNCTG 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 5 cut(s) 34, 64, 512, 901, 1125
ApeKI GCWGC 3 cut(s) 645, 819, 1028
AspLEI GCGC 2 cut(s) 20, 781
AsuHPI GGTGA 2 cut(s) 70, 430
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BalI TGGCCA 1 cut(s) 514
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 632, 806, 1015
BccI CCATC 2 cut(s) 475, 550
BceAI ACGGC 3 cut(s) 51, 342, 916
BciT130I CCWGG 2 cut(s) 99, 1061
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 275, 341, 1085
BfmI CTRYAG 1 cut(s) 1029
BfoI RGCGCY 2 cut(s) 21, 782
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 2 cut(s) 248, 812
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 4 cut(s) 34, 646, 820, 1029
BlsI GCNGC 4 cut(s) 35, 647, 821, 1030
Bme1390I CCNGG 2 cut(s) 99, 1061
BmeT110I CYCGRG 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 99, 1061
BmsI GCATC 3 cut(s) 81, 160, 869
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 955
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 2 cut(s) 55, 206
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 1170
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 150, 1004
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 99, 1061
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 1160
BseLI CCNNNNNNNGG 2 cut(s) 62, 1170
BseMI GCAATG 2 cut(s) 150, 1004
BseMII CTCAG 3 cut(s) 389, 491, 714
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 632, 806, 1015
BsgI GTGCAG 2 cut(s) 248, 790
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 5 cut(s) 36, 66, 514, 903, 1127
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 56, 207
BslFI GGGAC 2 cut(s) 122, 798
BslI CCNNNNNNNGG 2 cut(s) 62, 1170
BsmAI GTCTC 3 cut(s) 275, 341, 1085
BsmBI CGTCTC 2 cut(s) 275, 341
BsmFI GGGAC 2 cut(s) 122, 798
BsmI GAATGC 2 cut(s) 560, 899
BsnI GGCC 5 cut(s) 36, 66, 514, 903, 1127
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 108, 342
BspACI CCGC 3 cut(s) 33, 817, 1038
BspANI GGCC 5 cut(s) 36, 66, 514, 903, 1127
BspCNI CTCAG 3 cut(s) 388, 490, 715
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 1033
BspMI ACCTGC 2 cut(s) 248, 812
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 2 cut(s) 150, 1004
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 108, 342
BssNI GRCGYC 1 cut(s) 955
Bst2UI CCWGG 2 cut(s) 99, 1061
Bst4CI ACNGT 6 cut(s) 43, 230, 269, 587, 615, 763
BstACI GRCGYC 1 cut(s) 955
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 566
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 650, 1042
BstDEI CTNAG 3 cut(s) 375, 477, 723
BstF5I GGATG 1 cut(s) 1160
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 21, 782
BstHHI GCGC 2 cut(s) 20, 781
BstKTI GATC 2 cut(s) 111, 345
BstMAI GTCTC 3 cut(s) 275, 341, 1085
BstMBI GATC 2 cut(s) 108, 342
BstNI CCWGG 2 cut(s) 99, 1061
BstNSI RCATGY 2 cut(s) 442, 813
BstSCI CCNGG 2 cut(s) 97, 1059
BstSFI CTRYAG 1 cut(s) 1029
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 632, 806, 1015
BstV2I GAAGAC 1 cut(s) 386
BstXI CCANNNNNNTGG 2 cut(s) 950, 1106
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 5 cut(s) 36, 66, 514, 903, 1127
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 1160
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 4 cut(s) 352, 515, 592, 759
BveI ACCTGC 2 cut(s) 248, 812
Cac8I GCNNGC 3 cut(s) 175, 650, 1042
CaiI CAGNNNCTG 1 cut(s) 240
CciI TCATGA 1 cut(s) 633
CfoI GCGC 2 cut(s) 20, 781
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 223
CviAII CATG 4 cut(s) 439, 634, 810, 1131
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 3 cut(s) 375, 477, 723
DpnI GATC 2 cut(s) 110, 344
DpnII GATC 2 cut(s) 108, 342
EaeI YGGCCR 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 520, 847
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 97, 1059
EcoRV GATATC 2 cut(s) 520, 847
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 275, 341
FaeI CATG 4 cut(s) 442, 637, 813, 1134
FaqI GGGAC 2 cut(s) 122, 798
FatI CATG 4 cut(s) 438, 633, 809, 1130
FauI CCCGC 1 cut(s) 824
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 34, 646, 820, 1029
FokI GGATG 1 cut(s) 1147
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 34, 646, 820, 1029
GlaI GCGC 2 cut(s) 19, 780
GluI GCNGC 4 cut(s) 34, 646, 820, 1029
HaeII RGCGCY 2 cut(s) 21, 782
HaeIII GGCC 5 cut(s) 36, 66, 514, 903, 1127
HapII CCGG 2 cut(s) 56, 207
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 20, 781
Hin1I GRCGYC 1 cut(s) 955
Hin1II CATG 4 cut(s) 442, 637, 813, 1134
Hin6I GCGC 2 cut(s) 18, 779
HinP1I GCGC 2 cut(s) 18, 779
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 3 cut(s) 282, 293, 1197
HinfI GANTC 6 cut(s) 28, 49, 182, 348, 933, 1034
HpaII CCGG 2 cut(s) 56, 207
HphI GGTGA 2 cut(s) 70, 430
Hpy166II GTNNAC 3 cut(s) 223, 732, 953
Hpy188I TCNGA 6 cut(s) 253, 347, 378, 480, 922, 1144
Hpy188III TCNNGA 8 cut(s) 25, 56, 196, 272, 289, 340, 634, 866
Hpy8I GTNNAC 3 cut(s) 223, 732, 953
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 3 cut(s) 415, 863, 1174
HpyCH4III ACNGT 6 cut(s) 43, 230, 269, 587, 615, 763
HpyCH4IV ACGT 1 cut(s) 955
HpyF3I CTNAG 3 cut(s) 375, 477, 723
HpySE526I ACGT 1 cut(s) 955
Hsp92I GRCGYC 1 cut(s) 955
Hsp92II CATG 4 cut(s) 442, 637, 813, 1134
HspAI GCGC 2 cut(s) 18, 779
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 108, 342
LmnI GCTCC 2 cut(s) 209, 719
Lsp1109I GCAGC 3 cut(s) 632, 806, 1015
LweI GCATC 3 cut(s) 81, 160, 869
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 3 cut(s) 188, 737, 763
MalI GATC 2 cut(s) 110, 344
MboI GATC 2 cut(s) 108, 342
MboII GAAGA 5 cut(s) 44, 67, 391, 683, 1105
MfeI CAATTG 1 cut(s) 1086
MhlI GDGCHC 2 cut(s) 126, 206
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 6 cut(s) 8, 318, 365, 576, 655, 1086
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 342, 1043
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 8 cut(s) 203, 336, 526, 667, 672, 718, 976, 1138
Mox20I TGGCCA 1 cut(s) 514
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 514
MseI TTAA 3 cut(s) 593, 825, 960
MslI CAYNNNNRTG 2 cut(s) 827, 855
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 3 cut(s) 645, 686, 819
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 56, 207
MspR9I CCNGG 2 cut(s) 99, 1061
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 2 cut(s) 560, 899
MvaI CCWGG 2 cut(s) 99, 1061
MvnI CGCG 1 cut(s) 33
NdeI CATATG 1 cut(s) 938
NdeII GATC 2 cut(s) 108, 342
NlaIII CATG 4 cut(s) 442, 637, 813, 1134
NmeAIII GCCGAG 1 cut(s) 748
NspI RCATGY 2 cut(s) 442, 813
NspV TTCGAA 2 cut(s) 47, 180
OliI CACNNNNGTG 1 cut(s) 855
PagI TCATGA 1 cut(s) 633
PaqCI CACCTGC 1 cut(s) 248
PciI ACATGT 2 cut(s) 438, 809
PctI GAATGC 2 cut(s) 560, 899
PfeI GAWTC 4 cut(s) 28, 49, 182, 933
PkrI GCNGC 4 cut(s) 35, 647, 821, 1030
PleI GAGTC 2 cut(s) 342, 1042
PpsI GAGTC 2 cut(s) 342, 1042
PscI ACATGT 2 cut(s) 438, 809
Psp6I CCWGG 2 cut(s) 97, 1059
PspGI CCWGG 2 cut(s) 97, 1059
PstI CTGCAG 1 cut(s) 1033
PstNI CAGNNNCTG 1 cut(s) 240
PvuII CAGCTG 2 cut(s) 645, 686
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 827, 855
SaqAI TTAA 3 cut(s) 593, 825, 960
SatI GCNGC 4 cut(s) 34, 646, 820, 1029
Sau3AI GATC 2 cut(s) 108, 342
SchI GAGTC 2 cut(s) 342, 1043
ScrFI CCNGG 2 cut(s) 99, 1061
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 3 cut(s) 81, 160, 869
SfcI CTRYAG 1 cut(s) 1029
SfuI TTCGAA 2 cut(s) 47, 180
SmiMI CAYNNNNRTG 2 cut(s) 827, 855
SmlI CTYRAG 2 cut(s) 194, 959
SmoI CTYRAG 2 cut(s) 194, 959
Sse9I AATT 6 cut(s) 8, 318, 365, 576, 655, 1086
SsiI CCGC 3 cut(s) 33, 817, 1038
StyD4I CCNGG 2 cut(s) 97, 1059
TaaI ACNGT 6 cut(s) 43, 230, 269, 587, 615, 763
TaiI ACGT 1 cut(s) 958
TaqI TCGA 4 cut(s) 47, 180, 273, 290
TasI AATT 6 cut(s) 8, 318, 365, 576, 655, 1086
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 28, 49, 182, 933
Tru1I TTAA 3 cut(s) 593, 825, 960
Tru9I TTAA 3 cut(s) 593, 825, 960
TscAI CASTG 4 cut(s) 359, 515, 592, 766
TseI GCWGC 3 cut(s) 645, 819, 1028
TspDTI ATGAA 6 cut(s) 618, 622, 650, 906, 925, 1149
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 4 cut(s) 359, 515, 592, 766
Vha464I CTTAAG 1 cut(s) 959
XceI RCATGY 2 cut(s) 442, 813
ZraI GACGTC 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.