Rh6BG367700

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006602
Physical Location & Seq
Forward (+)
59727432 .. 59730904
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG367700.1

Sequence Viewer

Length: 1239 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCGAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTGTGCGTCCCAAAAAACTCCATTGCTGACCACAAGTGCGATGCTTGCTTCGAATCCAGTAACCTCAAGAAGTGCTCCGGTTGCAAGATTGTGTACTACTGTTCCAGCACCTGCCAGAAGTCTGAATGGAAACTGCACCGTCTCGAATGTGAAGCTTTCTCGAAGCTTCCCATTGAGTTCCGTCATCAAATTACACCTCCTATTCGTCTCACGATCAGACTCCACTGCCGTTCAAAATTACAATCTCAGAAGACTATTCCTACTTCTGCTATGGACAACTACGATCTGGTGAAGGCTTTGGTGGCTCACATGTCAAAGATTGATGATGAGCAAAGGTGGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGTATTCAATGCACACACAATTTATGACAGTGGATTAAAGCACTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCGTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTGACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCACGAAAGTGCAGTTCTGGAAGGCTACCGATGCACACATAATGAATGCGATGGCCTTTTGCTTTGCAACTCTGATGATAATGGATTCATATGCCAACAATGCGGATGTCTTAAGAGCAAAAAAGAGATACGAGAGGTGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATAGCTGCGGAGTCCGCAAGCTCTTATATTACTTACCAGGAAGTAATAGCTCTGTATAAGGCAATCGAGACACTCCAAAGGCAACTGTTTAATCCTTGCTGCATCTATTTGATCCCAACTTGGGAGGGGATTATAGAGAATTCAATGAAGCTGGAAGACTGGAGTGAAGCTCTAGCATATTGCAGATTGACCATTGCAGTGTATCAAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

412

Amino Acids

46.83

Weight (kDa)

7.71

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 247 6.4e-12 SET domain
zf-MYND PF01753 56 - 93 3.9e-10 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
Acc36I ACCTGC 2 cut(s) 248, 812
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 5 cut(s) 33, 817, 951, 1031, 1038
AclWI GGATC 1 cut(s) 1129
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 1162
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 62, 1144
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 2 cut(s) 438, 809
AgsI TTSAA 4 cut(s) 363, 552, 565, 1167
AjnI CCWGG 2 cut(s) 97, 1059
AleI CACNNNNGTG 1 cut(s) 855
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 275, 341, 1085
AlwI GGATC 1 cut(s) 1129
AlwNI CAGNNNCTG 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 4 cut(s) 34, 64, 512, 901
ApeKI GCWGC 4 cut(s) 645, 819, 1028, 1122
ApoI RAATTY 1 cut(s) 1162
AspLEI GCGC 2 cut(s) 20, 781
AsuHPI GGTGA 2 cut(s) 70, 430
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 654
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BalI TGGCCA 1 cut(s) 514
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 386, 1185
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 4 cut(s) 632, 806, 1015, 1109
BccI CCATC 3 cut(s) 475, 550, 893
BceAI ACGGC 2 cut(s) 51, 342
BciT130I CCWGG 2 cut(s) 99, 1061
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 275, 341, 1085
BfaI CTAG 1 cut(s) 1196
BfoI RGCGCY 2 cut(s) 21, 782
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 2 cut(s) 248, 812
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
BlsI GCNGC 5 cut(s) 35, 647, 821, 1030, 1124
Bme1390I CCNGG 2 cut(s) 99, 1061
BmeT110I CYCGRG 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 99, 1061
BmsI GCATC 4 cut(s) 81, 160, 869, 1134
BpiI GAAGAC 2 cut(s) 386, 1185
BplI GAGNNNNNCTC 2 cut(s) 1177, 1209
BpmI CTGGAG 1 cut(s) 1204
Bpu10I CCTNAGC 1 cut(s) 723
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 2 cut(s) 55, 206
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 1144
Bse1I ACTGG 2 cut(s) 186, 1187
Bse3DI GCAATG 3 cut(s) 150, 1004, 1215
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 99, 1061
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 959
BseLI CCNNNNNNNGG 2 cut(s) 62, 1144
BseMI GCAATG 3 cut(s) 150, 1004, 1215
BseMII CTCAG 3 cut(s) 389, 491, 714
BseNI ACTGG 2 cut(s) 186, 1187
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 4 cut(s) 632, 806, 1015, 1109
BsgI GTGCAG 3 cut(s) 248, 790, 879
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 36, 66, 514, 903
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 56, 207
BslFI GGGAC 2 cut(s) 122, 798
BslI CCNNNNNNNGG 2 cut(s) 62, 1144
BsmAI GTCTC 3 cut(s) 275, 341, 1085
BsmBI CGTCTC 2 cut(s) 275, 341
BsmFI GGGAC 2 cut(s) 122, 798
BsmI GAATGC 1 cut(s) 899
BsnI GGCC 4 cut(s) 36, 66, 514, 903
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 3 cut(s) 126, 206, 654
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 4 cut(s) 108, 342, 412, 1134
BspACI CCGC 5 cut(s) 33, 817, 951, 1031, 1038
BspANI GGCC 4 cut(s) 36, 66, 514, 903
BspCNI CTCAG 3 cut(s) 388, 490, 715
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 633
BspMI ACCTGC 2 cut(s) 248, 812
BspPI GGATC 1 cut(s) 1129
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 3 cut(s) 150, 1004, 1215
BsrI ACTGG 2 cut(s) 186, 1187
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 4 cut(s) 108, 342, 412, 1134
Bst2UI CCWGG 2 cut(s) 99, 1061
Bst4CI ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
BstAFI CTTAAG 1 cut(s) 959
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 650, 1042
BstDEI CTNAG 3 cut(s) 375, 477, 723
BstF5I GGATG 1 cut(s) 959
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 21, 782
BstHHI GCGC 2 cut(s) 20, 781
BstKTI GATC 4 cut(s) 111, 345, 415, 1137
BstMAI GTCTC 3 cut(s) 275, 341, 1085
BstMBI GATC 4 cut(s) 108, 342, 412, 1134
BstNI CCWGG 2 cut(s) 99, 1061
BstNSI RCATGY 2 cut(s) 442, 813
BstSCI CCNGG 2 cut(s) 97, 1059
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 632, 806, 1015, 1109
BstV2I GAAGAC 2 cut(s) 386, 1185
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 36, 66, 514, 903
BtgZI GCGATG 2 cut(s) 183, 912
BtsCI GGATG 1 cut(s) 959
BtsI GCAGTG 2 cut(s) 352, 1227
BtsIMutI CAGTG 5 cut(s) 352, 515, 592, 759, 1227
BveI ACCTGC 2 cut(s) 248, 812
Cac8I GCNNGC 3 cut(s) 175, 650, 1042
CaiI CAGNNNCTG 1 cut(s) 240
CciI TCATGA 1 cut(s) 633
CfoI GCGC 2 cut(s) 20, 781
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 439, 634, 810
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 3 cut(s) 375, 477, 723
DpnI GATC 4 cut(s) 110, 344, 414, 1136
DpnII GATC 4 cut(s) 108, 342, 412, 1134
EaeI YGGCCR 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 520, 847
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 1162
EcoRII CCWGG 2 cut(s) 97, 1059
EcoRV GATATC 2 cut(s) 520, 847
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 275, 341
FaeI CATG 3 cut(s) 442, 637, 813
FaqI GGGAC 2 cut(s) 122, 798
FatI CATG 3 cut(s) 438, 633, 809
FauI CCCGC 1 cut(s) 824
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
FokI GGATG 1 cut(s) 966
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
FspBI CTAG 1 cut(s) 1196
GlaI GCGC 2 cut(s) 19, 780
GluI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
GsuI CTGGAG 1 cut(s) 1204
HaeII RGCGCY 2 cut(s) 21, 782
HaeIII GGCC 4 cut(s) 36, 66, 514, 903
HapII CCGG 2 cut(s) 56, 207
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 20, 781
Hin1II CATG 3 cut(s) 442, 637, 813
Hin6I GCGC 2 cut(s) 18, 779
HinP1I GCGC 2 cut(s) 18, 779
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 2 cut(s) 282, 293
HinfI GANTC 7 cut(s) 28, 49, 182, 348, 766, 933, 1034
HpaII CCGG 2 cut(s) 56, 207
HphI GGTGA 2 cut(s) 70, 430
Hpy166II GTNNAC 2 cut(s) 223, 732
Hpy188I TCNGA 5 cut(s) 253, 347, 378, 480, 922
Hpy188III TCNNGA 9 cut(s) 25, 56, 196, 272, 289, 340, 634, 866, 1090
Hpy8I GTNNAC 2 cut(s) 223, 732
HpyAV CCTTC 2 cut(s) 415, 863
HpyCH4III ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
HpyF3I CTNAG 3 cut(s) 375, 477, 723
Hsp92II CATG 3 cut(s) 442, 637, 813
HspAI GCGC 2 cut(s) 18, 779
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 342, 412, 1134
LmnI GCTCC 2 cut(s) 209, 719
Lsp1109I GCAGC 4 cut(s) 632, 806, 1015, 1109
LweI GCATC 4 cut(s) 81, 160, 869, 1134
MaeI CTAG 1 cut(s) 1196
MaeIII GTNAC 3 cut(s) 188, 737, 763
MalI GATC 4 cut(s) 110, 344, 414, 1136
MboI GATC 4 cut(s) 108, 342, 412, 1134
MboII GAAGA 5 cut(s) 44, 67, 391, 683, 1190
MhlI GDGCHC 3 cut(s) 126, 206, 654
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 6 cut(s) 8, 318, 365, 576, 655, 1162
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 3 cut(s) 342, 760, 1043
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 8 cut(s) 203, 336, 526, 667, 672, 718, 976, 1141
Mox20I TGGCCA 1 cut(s) 514
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 514
MseI TTAA 5 cut(s) 593, 825, 960, 1113, 1237
MslI CAYNNNNRTG 3 cut(s) 827, 855, 1220
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 3 cut(s) 645, 686, 819
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 56, 207
MspR9I CCNGG 2 cut(s) 99, 1061
Mva1269I GAATGC 1 cut(s) 899
MvaI CCWGG 2 cut(s) 99, 1061
MvnI CGCG 1 cut(s) 33
NdeI CATATG 1 cut(s) 938
NdeII GATC 4 cut(s) 108, 342, 412, 1134
NlaIII CATG 3 cut(s) 442, 637, 813
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 2 cut(s) 442, 813
NspV TTCGAA 2 cut(s) 47, 180
OliI CACNNNNGTG 1 cut(s) 855
PagI TCATGA 1 cut(s) 633
PaqCI CACCTGC 1 cut(s) 248
PciI ACATGT 2 cut(s) 438, 809
PctI GAATGC 1 cut(s) 899
PfeI GAWTC 4 cut(s) 28, 49, 182, 933
PkrI GCNGC 5 cut(s) 35, 647, 821, 1030, 1124
PleI GAGTC 3 cut(s) 342, 760, 1042
PpsI GAGTC 3 cut(s) 342, 760, 1042
PscI ACATGT 2 cut(s) 438, 809
Psp6I CCWGG 2 cut(s) 97, 1059
PspGI CCWGG 2 cut(s) 97, 1059
PstNI CAGNNNCTG 1 cut(s) 240
PvuII CAGCTG 2 cut(s) 645, 686
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 3 cut(s) 827, 855, 1220
SaqAI TTAA 5 cut(s) 593, 825, 960, 1113, 1237
SatI GCNGC 5 cut(s) 34, 646, 820, 1029, 1123
Sau3AI GATC 4 cut(s) 108, 342, 412, 1134
SchI GAGTC 3 cut(s) 342, 760, 1043
ScrFI CCNGG 2 cut(s) 99, 1061
SduI GDGCHC 3 cut(s) 126, 206, 654
SfaNI GCATC 4 cut(s) 81, 160, 869, 1134
SfuI TTCGAA 2 cut(s) 47, 180
SmiMI CAYNNNNRTG 3 cut(s) 827, 855, 1220
SmlI CTYRAG 2 cut(s) 194, 959
SmoI CTYRAG 2 cut(s) 194, 959
Sse9I AATT 6 cut(s) 8, 318, 365, 576, 655, 1162
SsiI CCGC 5 cut(s) 33, 817, 951, 1031, 1038
SspMI CTAG 1 cut(s) 1196
StyD4I CCNGG 2 cut(s) 97, 1059
TaaI ACNGT 7 cut(s) 43, 230, 269, 587, 615, 763, 1110
TaqI TCGA 5 cut(s) 47, 180, 273, 290, 1089
TasI AATT 6 cut(s) 8, 318, 365, 576, 655, 1162
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 28, 49, 182, 933
Tru1I TTAA 5 cut(s) 593, 825, 960, 1113, 1237
Tru9I TTAA 5 cut(s) 593, 825, 960, 1113, 1237
TscAI CASTG 5 cut(s) 359, 515, 592, 766, 1227
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 4 cut(s) 645, 819, 1028, 1122
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 6 cut(s) 618, 622, 650, 906, 925, 1184
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 5 cut(s) 359, 515, 592, 766, 1227
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 1 cut(s) 1162
XceI RCATGY 2 cut(s) 442, 813
XspI CTAG 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.