Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008966.1

Orthogroup ID

OG0006602

Physical Location & Seq

Genomic Coordinates Reverse (-)

57204 .. 61476

Gene Structure 4273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008966.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggaggaattgcagagcgctgtcgggaatcgcggcctgaccgtttcgaatcttccggagaaaggccgttgcatcttcaccagtcaccaccaaagacttctatccagaagccaagagccctatgtgtgcgtcccaaaacactccattgctgaccacaagtgcgatgcttgcttcgaatccagtaacctcaacaagtgctccggttgcaagattgtgtactactgttccagcacctgccagaagtctgaatggaaactgcaccgtctcgaatgtgaagctttctcgaagcttcccattgagttccgtcatcaaattacacctcttattcgtctcacgatcagactccactgccgttcaaaattacaatctcagaagactattcctacttctgctatggacaactacgatttggtgaaggctttggtggctcacatgtcaaagattgatgatgagcaaaggtggctgtatgctcagatggctaaccttgtcagcttgatacttcagtggccagatatcaataaaaaagaggttgcagagaacttttcaaagatggcattcaatgcacacacaatttatgacagtggattaaagcatttgggtaaaggactgtatcctgtcatttcattcatgaaccacagctgcttgcccaattctattttagtatttgaggggaggtcagctgttcttcgtgctgtgcaacatatacccaaaggagctgagggtcagtatgatgatatccacgaaagtgcagttctggaaggctaccgatgcacacataatgaatgcgatggccttttgctttgcaactctggagtatatcggaactttcaatcctttcatccttcacttggattgcaatactatacctgtgggaagcttgaaggggtacttggagaggctgagaatgctgtgaaatctctgaccaaggcagtcgatatactgcagattacttataggacaagtacacccttcatgaaggatcttttcagtatgttggaggagcaacgtgaaattgaagctctcatcaatggaacagattactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET TPR_12 zf-MYND

Protein Analysis

347

Amino Acids

39.36

Weight (kDa)

7.2

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17900
fragaria_vesca	FvH4_2g26280
malus_domestica	MD15G1356600.v1.1
prunus_persica	Prupe.1G503800_v2.0.a1
pyrus_communis	pycom15g31870
rosa_chinensis	RchiOBHm_Chr6g0294881 RchiOBHm_Chr6g0294891
rosa_laevigata	RLG00000011833 RLG00000011834
rosa_multiflora	Rmu_sc0008966.1_g000011 Rmu_sc0008966.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172910 Rroxscaffold_7G00172930
rosa_rugosa	Rorug06G0247700 Rorug06G0248300 Rorug06G0248300
rosa_samantha	Rh4BG161800 Rh6AG361100 Rh6AG361200 Rh6BG367700 Rh6BG367800 Rh6CG374900 Rh6CG375000 Rh6DG361600 Rh6DG361700
rosa_wichuraiana	Rw6G031500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	987
AcoI	YGGCCR	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	3 cut(s)	218, 888, 964
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	62, 848
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	357, 546, 559, 830, 881, 1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	873, 905
AleI	CACNNNNGTG	1 cut(s)	744
AloI	GAACNNNNNNTCC	2 cut(s)	815, 847
AluBI	AGCT	8 cut(s)	278, 289, 492, 639, 680, 716, 877, 1019
AluI	AGCT	8 cut(s)	278, 289, 492, 639, 680, 716, 877, 1019
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	269, 335
AlwI	GGATC	1 cut(s)	987
AlwNI	CAGNNNCTG	1 cut(s)	234
Aor13HI	TCCGGA	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	4 cut(s)	34, 64, 506, 790
ApeKI	GCWGC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	20
AsuHPI	GGTGA	3 cut(s)	70, 77, 424
AsuII	TTCGAA	2 cut(s)	47, 174
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BalI	TGGCCA	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	469, 544, 782
BceAI	ACGGC	2 cut(s)	51, 336
BciVI	GTATCC	1 cut(s)	621
BcoDI	GTCTC	2 cut(s)	269, 335
BfaI	CTAG	1 cut(s)	1042
BfmI	CTRYAG	1 cut(s)	941
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	2 cut(s)	34, 640
BlsI	GCNGC	2 cut(s)	35, 641
BmsI	GCATC	3 cut(s)	81, 154, 758
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	717
Bpu14I	TTCGAA	2 cut(s)	47, 174
BsaJI	CCNNGG	1 cut(s)	924
BsaWI	WCCGGW	2 cut(s)	55, 200
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 848
Bse1I	ACTGG	2 cut(s)	81, 180
Bse3DI	GCAATG	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	2 cut(s)	62, 848
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	383, 485, 708, 891
BseNI	ACTGG	2 cut(s)	81, 180
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	1 cut(s)	626
BsgI	GTGCAG	2 cut(s)	242, 768
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	36, 66, 508, 792
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	56, 201
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	62, 848
BsmAI	GTCTC	2 cut(s)	269, 335
BsmBI	CGTCTC	2 cut(s)	269, 335
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	3 cut(s)	554, 788, 910
BsnI	GGCC	4 cut(s)	36, 66, 508, 792
Bsp119I	TTCGAA	2 cut(s)	47, 174
Bsp1286I	GDGCHC	2 cut(s)	120, 200
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	336, 979
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	4 cut(s)	36, 66, 508, 792
BspCNI	CTCAG	4 cut(s)	382, 484, 709, 892
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	2 cut(s)	627, 972
BspMAI	CTGCAG	1 cut(s)	945
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	987
BspT104I	TTCGAA	2 cut(s)	47, 174
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	81, 180
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	2 cut(s)	336, 979
BssT1I	CCWWGG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	43, 224, 263, 581, 609
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBI	TTCGAA	2 cut(s)	47, 174
BstC8I	GCNNGC	2 cut(s)	169, 644
BstDEI	CTNAG	4 cut(s)	369, 471, 717, 900
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	339, 982
BstMAI	GTCTC	2 cut(s)	269, 335
BstMBI	GATC	2 cut(s)	336, 979
BstMWI	GCNNNNNNNGC	8 cut(s)	168, 204, 425, 460, 476, 560, 768, 905
BstNSI	RCATGY	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	941
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	979
BstYI	RGATCY	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	36, 66, 508, 792
BtgZI	GCGATG	2 cut(s)	177, 801
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	346, 509, 586
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	169, 644
CaiI	CAGNNNCTG	1 cut(s)	234
CciI	TCATGA	2 cut(s)	627, 972
CfoI	GCGC	1 cut(s)	20
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	217, 887, 963
CviAII	CATG	3 cut(s)	433, 628, 973
CviQI	GTAC	3 cut(s)	217, 887, 963
DdeI	CTNAG	4 cut(s)	369, 471, 717, 900
DpnI	GATC	2 cut(s)	338, 981
DpnII	GATC	2 cut(s)	336, 979
EaeI	YGGCCR	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	924
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	2 cut(s)	514, 736
Eco47III	AGCGCT	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	485
EcoRV	GATATC	2 cut(s)	514, 736
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	2 cut(s)	269, 335
FaeI	CATG	3 cut(s)	436, 631, 976
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	432, 627, 972
Fnu4HI	GCNGC	2 cut(s)	34, 640
FokI	GGATG	1 cut(s)	825
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	34, 640
FspBI	CTAG	1 cut(s)	1042
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	34, 640
GsuI	CTGGAG	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	4 cut(s)	36, 66, 508, 792
HapII	CCGG	2 cut(s)	56, 201
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	436, 631, 976
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HindIII	AAGCTT	3 cut(s)	276, 287, 875
HinfI	GANTC	4 cut(s)	28, 49, 176, 342
HpaII	CCGG	2 cut(s)	56, 201
HphI	GGTGA	3 cut(s)	70, 77, 424
Hpy166II	GTNNAC	2 cut(s)	217, 965
Hpy188I	TCNGA	6 cut(s)	247, 341, 372, 474, 822, 921
Hpy8I	GTNNAC	2 cut(s)	217, 965
HpyAV	CCTTC	6 cut(s)	409, 752, 852, 875, 970, 979
HpyCH4III	ACNGT	5 cut(s)	43, 224, 263, 581, 609
HpyCH4IV	ACGT	1 cut(s)	1006
HpyF10VI	GCNNNNNNNGC	8 cut(s)	168, 204, 425, 460, 476, 560, 768, 905
HpyF3I	CTNAG	4 cut(s)	369, 471, 717, 900
HpySE526I	ACGT	1 cut(s)	1006
Hsp92II	CATG	3 cut(s)	436, 631, 976
HspAI	GCGC	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	336, 979
LmnI	GCTCC	3 cut(s)	203, 713, 1000
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	3 cut(s)	81, 154, 758
MaeI	CTAG	1 cut(s)	1042
MaeII	ACGT	1 cut(s)	1006
MaeIII	GTNAC	2 cut(s)	83, 182
MalI	GATC	2 cut(s)	338, 981
MboI	GATC	2 cut(s)	336, 979
MboII	GAAGA	4 cut(s)	44, 67, 385, 677
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	2 cut(s)	120, 200
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	6 cut(s)	8, 312, 359, 570, 649, 1011
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	975
MnlI	CCTC	8 cut(s)	197, 330, 520, 661, 666, 712, 889, 991
Mox20I	TGGCCA	1 cut(s)	508
MroI	TCCGGA	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	508
MspA1I	CMGCKG	2 cut(s)	639, 680
MspI	CCGG	2 cut(s)	56, 201
Mva1269I	GAATGC	3 cut(s)	554, 788, 910
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	8 cut(s)	168, 204, 425, 460, 476, 560, 768, 905
NdeII	GATC	2 cut(s)	336, 979
NlaIII	CATG	3 cut(s)	436, 631, 976
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	2 cut(s)	47, 174
OliI	CACNNNNGTG	1 cut(s)	744
PagI	TCATGA	2 cut(s)	627, 972
PaqCI	CACCTGC	1 cut(s)	242
PciI	ACATGT	1 cut(s)	432
PctI	GAATGC	3 cut(s)	554, 788, 910
PfeI	GAWTC	3 cut(s)	28, 49, 176
PkrI	GCNGC	2 cut(s)	35, 641
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PscI	ACATGT	1 cut(s)	432
PstI	CTGCAG	1 cut(s)	945
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	979
PvuII	CAGCTG	2 cut(s)	639, 680
RsaI	GTAC	3 cut(s)	218, 888, 964
RsaNI	GTAC	3 cut(s)	217, 887, 963
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	2 cut(s)	34, 640
Sau3AI	GATC	2 cut(s)	336, 979
SchI	GAGTC	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	120, 200
SfaNI	GCATC	3 cut(s)	81, 154, 758
SfcI	CTRYAG	1 cut(s)	941
SfuI	TTCGAA	2 cut(s)	47, 174
SmiMI	CAYNNNNRTG	1 cut(s)	744
Sse9I	AATT	6 cut(s)	8, 312, 359, 570, 649, 1011
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	1042
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	5 cut(s)	43, 224, 263, 581, 609
TaiI	ACGT	1 cut(s)	1009
TaqI	TCGA	5 cut(s)	47, 174, 267, 284, 933
TasI	AATT	6 cut(s)	8, 312, 359, 570, 649, 1011
TatI	WGTACW	2 cut(s)	216, 962
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	28, 49, 176
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	3 cut(s)	353, 509, 586
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	639
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	7 cut(s)	612, 616, 644, 795, 827, 961, 989
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	353, 509, 586
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.