RLG00000011833

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
13138517 .. 13142766
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011833

Sequence Viewer

Length: 1317 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAACCGCGGCCTGACCGTTTCGAAACTTCCAGAGAAAGGCCGTTGCCTCCTCACCACCAAAGACTTCTGTCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTGTGCGTCCCGAACAACTCCGCCGGTAACTCCAAGTGCGATGCTTGCTTCGAATCCAGTCACCTCAAGAAGTGCTCCGGTTGCCAGGTTGTCTACTACTGCTCCAGCACTTGCCAGAAGTCGGAATGGAAGCTGCACCGTCTCGAATGTCAAGCTCTCTCGAAGCTTCCAAAGGAGAAGAGAAGGGCTGTTACGCCTTCTCTCCGTCTCATGATCAGACTCTACTGTCGTTCAAAGCTACAGTCTCAGAAGACTATTCCTACTTCTGCTATGGACAATTACAGTTTGGTGGAGGCCTTGGTGGCTCGTATGTTTCTGAGCATTTTACTGTTTGCGTGCAATGCACACACAATTTGTGACAGTGAATTGAAACCCCTGGGTACAGGACTCTATCCTGTCATATCAATCATTAACCACAGCTGCCTGCCGAATTCTGTTCTATTATTTGAGGGAAGGTCAGCTGTTGTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGATAAGTTACATCGACACGGCTGGAAGCACTGTGACTCGGCAAAAGGCACTGAAGGAACAATATCTTTTTACCTGTGCATGTCCCTGCTGCATTAAAGCGGGTCATTACGAGGATATCCAAGAAAGTGCAATTCTGGAAGGCTACCGATGCAAGGATAATAAATGTGATGGTTTTTTGCTTCGCGACTCTGATGACAAGGGATTCATATGCCAACAATGCGGACGTCTTAAGAGCAAAGAAGAGATAATAGAGATGGAAAGTGAAATAAGATCGTTGCAGGAAAAGGCTATTATAGCTGTAGAATCTGCACCTTCTATCACTTACCAGGAAGTTATAGCTATCTTGAAGGCAATGGAGACGCTCCAGAGGTATCTATGTCATGATTTCTGCATCTATTTGATCCCAACTTGGGAGGAGCTTATAAAGTTGCTAACATCCGAAACTTCACTCTCTTTCCCTGTAGGAGTATATCCAGGCTTTCATCCTTCTCTTGGATTGCAATACTATACCTGTGGAAAGCTTGAATGGTTACTTGGAGAAACTGATGACGCTGTGAAATCTCTGACCAAGGCAGTAGATATACTGCGGATTACTCATGGGACAAGTACACCCTTTATGAAGGATCTTTTCAGGAGGTTGGAGGAGGCACGTGCTGAAGCTTTCATCAATGGAGTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

49.0

Weight (kDa)

7.03

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 215 2.3e-10 SET domain
zf-MYND PF01753 56 - 93 1.9e-09 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1058
AasI GACNNNNNNGTC 1 cut(s) 354
AatII GACGTC 1 cut(s) 862
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 33, 819
AciI CCGC 6 cut(s) 31, 33, 150, 734, 855, 1222
AclWI GGATC 2 cut(s) 1030, 1266
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 2 cut(s) 707, 1311
AcvI CACGTG 1 cut(s) 1286
AcyI GRCGYC 1 cut(s) 859
AfaI GTAC 2 cut(s) 511, 1243
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 5 cut(s) 62, 250, 787, 1045, 1127
AflII CTTAAG 1 cut(s) 863
AgsI TTSAA 4 cut(s) 363, 499, 982, 1160
AjnI CCWGG 5 cut(s) 97, 213, 504, 960, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 1152, 1184
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 4 cut(s) 275, 341, 378, 986
AlwI GGATC 2 cut(s) 1030, 1266
Ama87I CYCGRG 1 cut(s) 23
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 3 cut(s) 34, 64, 423
ApeKI GCWGC 3 cut(s) 262, 549, 723
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 70, 182
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 304, 336
BbrPI CACGTG 1 cut(s) 1286
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 249, 536, 710
BccI CCATC 2 cut(s) 797, 883
BceAI ACGGC 2 cut(s) 51, 669
BciT130I CCWGG 5 cut(s) 99, 215, 506, 962, 1110
BclI TGATCA 2 cut(s) 108, 342
BcoDI GTCTC 4 cut(s) 275, 341, 378, 986
BfmI CTRYAG 3 cut(s) 368, 933, 1095
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 4 cut(s) 34, 263, 550, 724
BlsI GCNGC 4 cut(s) 35, 264, 551, 725
Bme1390I CCNGG 5 cut(s) 99, 215, 506, 962, 1110
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 5 cut(s) 99, 215, 506, 962, 1110
BmsI GCATC 3 cut(s) 160, 773, 1035
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 386
BpmI CTGGAG 2 cut(s) 217, 983
Bpu10I CCTNAGC 1 cut(s) 627
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 1286
BsaHI GRCGYC 1 cut(s) 859
BsaJI CCNNGG 6 cut(s) 31, 98, 426, 504, 505, 1203
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 615, 645
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 250, 787, 1045, 1127
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 475, 993
BseBI CCWGG 5 cut(s) 99, 215, 506, 962, 1110
BseDI CCNNGG 6 cut(s) 31, 98, 426, 504, 505, 1203
BseGI GGATG 2 cut(s) 1070, 1117
BseLI CCNNNNNNNGG 5 cut(s) 62, 250, 787, 1045, 1127
BseMI GCAATG 2 cut(s) 475, 993
BseMII CTCAG 3 cut(s) 389, 437, 618
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 65, 1064, 1292
BseXI GCAGC 3 cut(s) 249, 536, 710
BsgI GTGCAG 2 cut(s) 248, 927
Bsh1236I CGCG 2 cut(s) 33, 819
BshFI GGCC 3 cut(s) 36, 66, 425
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 153, 207
BslFI GGGAC 3 cut(s) 122, 702, 1249
BslI CCNNNNNNNGG 5 cut(s) 62, 250, 787, 1045, 1127
BsmAI GTCTC 4 cut(s) 275, 341, 378, 986
BsmBI CGTCTC 3 cut(s) 275, 341, 986
BsmFI GGGAC 3 cut(s) 122, 702, 1249
BsnI GGCC 3 cut(s) 36, 66, 425
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp143I GATC 5 cut(s) 108, 342, 905, 1035, 1258
Bsp68I TCGCGA 1 cut(s) 819
BspACI CCGC 6 cut(s) 31, 33, 150, 734, 855, 1222
BspANI GGCC 3 cut(s) 36, 66, 425
BspCNI CTCAG 3 cut(s) 388, 438, 619
BspFNI CGCG 2 cut(s) 33, 819
BspHI TCATGA 2 cut(s) 339, 1015
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 1030, 1266
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 863
BsrDI GCAATG 2 cut(s) 475, 993
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 31, 98, 426, 504, 505, 1203
BssMI GATC 5 cut(s) 108, 342, 905, 1035, 1258
BssNI GRCGYC 1 cut(s) 859
BssT1I CCWWGG 2 cut(s) 426, 1203
Bst2UI CCWGG 5 cut(s) 99, 215, 506, 962, 1110
Bst4CI ACNGT 8 cut(s) 43, 269, 356, 372, 413, 459, 491, 667
Bst6I CTCTTC 2 cut(s) 302, 870
BstACI GRCGYC 1 cut(s) 859
BstAFI CTTAAG 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 1286
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 3 cut(s) 175, 466, 554
BstDEI CTNAG 3 cut(s) 375, 446, 627
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 1070, 1117
BstFNI CGCG 2 cut(s) 33, 819
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 5 cut(s) 111, 345, 908, 1038, 1261
BstMAI GTCTC 4 cut(s) 275, 341, 378, 986
BstMBI GATC 5 cut(s) 108, 342, 905, 1035, 1258
BstMWI GCNNNNNNNGC 7 cut(s) 174, 210, 431, 470, 783, 852, 929
BstNI CCWGG 5 cut(s) 99, 215, 506, 962, 1110
BstNSI RCATGY 1 cut(s) 717
BstPAI GACNNNNGTC 1 cut(s) 93
BstSCI CCNGG 5 cut(s) 97, 213, 504, 960, 1108
BstSFI CTRYAG 3 cut(s) 368, 933, 1095
BstUI CGCG 2 cut(s) 33, 819
BstV1I GCAGC 3 cut(s) 249, 536, 710
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 1258
BstYI RGATCY 1 cut(s) 1258
BsuRI GGCC 3 cut(s) 36, 66, 425
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 1070, 1117
BtsIMutI CAGTG 3 cut(s) 496, 663, 683
BtuMI TCGCGA 1 cut(s) 819
Cac8I GCNNGC 3 cut(s) 175, 466, 554
CciI TCATGA 2 cut(s) 339, 1015
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 152
Cfr42I CCGCGG 1 cut(s) 34
CseI GACGC 3 cut(s) 124, 1003, 1193
Csp6I GTAC 2 cut(s) 510, 1242
CviAII CATG 4 cut(s) 340, 714, 1016, 1232
CviQI GTAC 2 cut(s) 510, 1242
DdeI CTNAG 3 cut(s) 375, 446, 627
DpnI GATC 5 cut(s) 110, 344, 907, 1037, 1260
DpnII GATC 5 cut(s) 108, 342, 905, 1035, 1258
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 302, 870
EarI CTCTTC 2 cut(s) 302, 870
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 426, 1203
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 751
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 707, 1311
Eco72I CACGTG 1 cut(s) 1286
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 5 cut(s) 97, 213, 504, 960, 1108
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 2 cut(s) 426, 1203
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 426, 1203
Esp3I CGTCTC 3 cut(s) 275, 341, 986
FaeI CATG 4 cut(s) 343, 717, 1019, 1235
FaqI GGGAC 3 cut(s) 122, 702, 1249
FatI CATG 4 cut(s) 339, 713, 1015, 1231
FauI CCCGC 1 cut(s) 727
FauNDI CATATG 1 cut(s) 842
FbaI TGATCA 2 cut(s) 108, 342
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 34, 263, 550, 724
FokI GGATG 2 cut(s) 1057, 1104
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 34, 263, 550, 724
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 34, 263, 550, 724
GsuI CTGGAG 2 cut(s) 217, 983
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 3 cut(s) 36, 66, 425
HapII CCGG 2 cut(s) 153, 207
HgaI GACGC 3 cut(s) 124, 1003, 1193
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 859
Hin1II CATG 4 cut(s) 343, 717, 1019, 1235
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 3 cut(s) 293, 1154, 1293
HinfI GANTC 7 cut(s) 182, 348, 516, 670, 821, 837, 938
HpaII CCGG 2 cut(s) 153, 207
HphI GGTGA 2 cut(s) 70, 182
Hpy166II GTNNAC 2 cut(s) 223, 1244
Hpy188I TCNGA 7 cut(s) 253, 347, 378, 447, 826, 1075, 1200
Hpy8I GTNNAC 2 cut(s) 223, 1244
HpyAV CCTTC 9 cut(s) 306, 336, 576, 682, 767, 957, 976, 1131, 1249
HpyCH4III ACNGT 8 cut(s) 43, 269, 356, 372, 413, 459, 491, 667
HpyCH4IV ACGT 2 cut(s) 859, 1285
HpyF10VI GCNNNNNNNGC 7 cut(s) 174, 210, 431, 470, 783, 852, 929
HpyF3I CTNAG 3 cut(s) 375, 446, 627
HpySE526I ACGT 2 cut(s) 859, 1285
Hsp92I GRCGYC 1 cut(s) 859
Hsp92II CATG 4 cut(s) 343, 717, 1019, 1235
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 2 cut(s) 108, 342
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 5 cut(s) 108, 342, 905, 1035, 1258
LmnI GCTCC 5 cut(s) 209, 236, 623, 1002, 1051
Lsp1109I GCAGC 3 cut(s) 249, 536, 710
LweI GCATC 3 cut(s) 160, 773, 1035
MaeII ACGT 2 cut(s) 859, 1285
MaeIII GTNAC 7 cut(s) 155, 188, 319, 485, 641, 667, 1164
MalI GATC 5 cut(s) 110, 344, 907, 1037, 1260
MboI GATC 5 cut(s) 108, 342, 905, 1035, 1258
MboII GAAGA 3 cut(s) 319, 391, 887
MflI RGATCY 1 cut(s) 1258
MhlI GDGCHC 2 cut(s) 126, 206
MluCI AATT 6 cut(s) 8, 406, 480, 494, 559, 765
MlyI GAGTC 4 cut(s) 342, 510, 664, 815
MmeI TCCRAC 2 cut(s) 231, 1254
MseI TTAA 3 cut(s) 540, 729, 864
MspA1I CMGCKG 3 cut(s) 33, 549, 590
MspCI CTTAAG 1 cut(s) 863
MspI CCGG 2 cut(s) 153, 207
MspR9I CCNGG 5 cut(s) 99, 215, 506, 962, 1110
MvaI CCWGG 5 cut(s) 99, 215, 506, 962, 1110
MvnI CGCG 2 cut(s) 33, 819
MwoI GCNNNNNNNGC 7 cut(s) 174, 210, 431, 470, 783, 852, 929
NdeI CATATG 1 cut(s) 842
NdeII GATC 5 cut(s) 108, 342, 905, 1035, 1258
NlaIII CATG 4 cut(s) 343, 717, 1019, 1235
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 3 cut(s) 188, 485, 667
NruI TCGCGA 1 cut(s) 819
NspI RCATGY 1 cut(s) 717
NspV TTCGAA 2 cut(s) 47, 180
PagI TCATGA 2 cut(s) 339, 1015
PasI CCCWGGG 1 cut(s) 505
PceI AGGCCT 1 cut(s) 425
PfeI GAWTC 3 cut(s) 182, 837, 938
PkrI GCNGC 4 cut(s) 35, 264, 551, 725
PleI GAGTC 4 cut(s) 342, 510, 664, 815
PmaCI CACGTG 1 cut(s) 1286
PmlI CACGTG 1 cut(s) 1286
PpsI GAGTC 4 cut(s) 342, 510, 664, 815
Ppu21I YACGTR 1 cut(s) 1286
PshAI GACNNNNGTC 1 cut(s) 93
PsiI TTATAA 1 cut(s) 1058
Psp6I CCWGG 5 cut(s) 97, 213, 504, 960, 1108
PspCI CACGTG 1 cut(s) 1286
PspGI CCWGG 5 cut(s) 97, 213, 504, 960, 1108
PspN4I GGNNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 1258
PvuII CAGCTG 2 cut(s) 549, 590
RruI TCGCGA 1 cut(s) 819
RsaI GTAC 2 cut(s) 511, 1243
RsaNI GTAC 2 cut(s) 510, 1242
SacII CCGCGG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 540, 729, 864
SatI GCNGC 4 cut(s) 34, 263, 550, 724
Sau3AI GATC 5 cut(s) 108, 342, 905, 1035, 1258
SchI GAGTC 4 cut(s) 342, 510, 664, 815
ScrFI CCNGG 5 cut(s) 99, 215, 506, 962, 1110
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 3 cut(s) 160, 773, 1035
SfcI CTRYAG 3 cut(s) 368, 933, 1095
Sfr303I CCGCGG 1 cut(s) 34
SfuI TTCGAA 2 cut(s) 47, 180
SgrBI CCGCGG 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 194, 863
SmoI CTYRAG 2 cut(s) 194, 863
Sse9I AATT 6 cut(s) 8, 406, 480, 494, 559, 765
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 6 cut(s) 31, 33, 150, 734, 855, 1222
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 5 cut(s) 97, 213, 504, 960, 1108
StyI CCWWGG 2 cut(s) 426, 1203
TaaI ACNGT 8 cut(s) 43, 269, 356, 372, 413, 459, 491, 667
TaiI ACGT 2 cut(s) 862, 1288
TaqI TCGA 5 cut(s) 47, 180, 273, 290, 648
TasI AATT 6 cut(s) 8, 406, 480, 494, 559, 765
TatI WGTACW 1 cut(s) 1241
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 182, 837, 938
Tru1I TTAA 3 cut(s) 540, 729, 864
Tru9I TTAA 3 cut(s) 540, 729, 864
TscAI CASTG 3 cut(s) 496, 670, 690
TseFI GTSAC 3 cut(s) 188, 485, 667
TseI GCWGC 3 cut(s) 262, 549, 723
Tsp45I GTSAC 3 cut(s) 188, 485, 667
TspDTI ATGAA 4 cut(s) 829, 1106, 1268, 1288
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 3 cut(s) 496, 670, 690
Vha464I CTTAAG 1 cut(s) 863
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 717
XmiI GTMKAC 1 cut(s) 222
ZraI GACGTC 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.