Rh6AG361100

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006602
Physical Location & Seq
Forward (+)
55994582 .. 55997897
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG361100.1

Sequence Viewer

Length: 1083 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCGAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCAGTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCAAGAGCCCTATGTATTGTGTACTACTGTTCCAGCACCTGCCAGAAGTCTGAATGGAAACTGCACCGTCTAGAATGTGAAGCTTTCTCGAAGCTTCCGATTGAACTCCACTGCCGTTCAAAATTACAATCTCAGAAGACTATTCCTACTTCTGCTATGGACAACTACGATTTGGTGAAGGCTTTGGTGGCTCACATGTCAAAGATTGATGATGAGCAAAGGTGGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGTATTCAATGCACACACAATTTATGACAGTGGATTAAAGCACTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTTGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTAACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCACGAAAGTGCAGTTCTGGAAGGCTACCGATGCACACATAATGAATGTGATGGCCTTTTGCTTTGCAACTCTGATGATAACGGATTCATATGCCAACAATGTGGACGTCTTAAGAGCAAAAAAGAGATACAAGAGGTGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATTGCTGCAGAGTCCGCAAGCTCTTATATCACTTACCAGGAAGTAATAGCTCTGTATAAGGTAATTGAGACACTCCAAAGGCAACTGTTTAATCCTTGCTGCATCTATTTGATCCCAACTTGGGAGGGGATTATAGAGAATTCAATGAAGCTGGAAGACTGGAGTGAAGCTCTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

360

Amino Acids

40.87

Weight (kDa)

7.13

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 101 - 207 1.4e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
AatII GACGTC 1 cut(s) 838
Acc36I ACCTGC 2 cut(s) 170, 692
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 33, 697, 918
AclWI GGATC 1 cut(s) 1009
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 1 cut(s) 1042
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 835
AfaI GTAC 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 62, 1024
AflII CTTAAG 1 cut(s) 839
AflIII ACRYGT 2 cut(s) 318, 689
AgsI TTSAA 5 cut(s) 227, 243, 432, 445, 1047
AjnI CCWGG 2 cut(s) 104, 939
AleI CACNNNNGTG 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 1 cut(s) 1009
AlwNI CAGNNNCTG 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 4 cut(s) 34, 64, 392, 781
ApeKI GCWGC 4 cut(s) 525, 699, 908, 1002
ApoI RAATTY 1 cut(s) 1042
AspLEI GCGC 2 cut(s) 20, 661
AsuHPI GGTGA 3 cut(s) 70, 77, 310
AsuII TTCGAA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 374, 407
BalI TGGCCA 1 cut(s) 394
BanII GRGCYC 1 cut(s) 133
BbsI GAAGAC 2 cut(s) 266, 1065
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 512, 686, 895, 989
BccI CCATC 3 cut(s) 355, 430, 773
BceAI ACGGC 2 cut(s) 51, 222
BciT130I CCWGG 2 cut(s) 106, 941
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 2 cut(s) 194, 1076
BfmI CTRYAG 1 cut(s) 909
BfoI RGCGCY 2 cut(s) 21, 662
BfrI CTTAAG 1 cut(s) 839
BfuAI ACCTGC 2 cut(s) 170, 692
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 5 cut(s) 34, 526, 700, 909, 1003
BlsI GCNGC 5 cut(s) 35, 527, 701, 910, 1004
Bme1390I CCNGG 2 cut(s) 106, 941
BmeT110I CYCGRG 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 106, 941
BmsI GCATC 3 cut(s) 81, 749, 1014
BpiI GAAGAC 2 cut(s) 266, 1065
BplI GAGNNNNNCTC 1 cut(s) 1057
Bpu10I CCTNAGC 1 cut(s) 603
Bpu14I TTCGAA 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 1024
Bse1I ACTGG 2 cut(s) 81, 1067
Bse3DI GCAATG 1 cut(s) 884
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 106, 941
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 62, 1024
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 3 cut(s) 269, 371, 594
BseNI ACTGG 2 cut(s) 81, 1067
BseXI GCAGC 4 cut(s) 512, 686, 895, 989
BsgI GTGCAG 3 cut(s) 170, 670, 759
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 4 cut(s) 36, 66, 394, 783
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 2 cut(s) 62, 1024
BsmAI GTCTC 1 cut(s) 965
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 4 cut(s) 36, 66, 394, 783
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 133
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 115, 1014
BspACI CCGC 3 cut(s) 33, 697, 918
BspANI GGCC 4 cut(s) 36, 66, 394, 783
BspCNI CTCAG 3 cut(s) 268, 370, 595
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 513
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 2 cut(s) 170, 692
BspPI GGATC 1 cut(s) 1009
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 884
BsrI ACTGG 2 cut(s) 81, 1067
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 115, 1014
BssNI GRCGYC 1 cut(s) 835
Bst2UI CCWGG 2 cut(s) 106, 941
Bst4CI ACNGT 7 cut(s) 43, 152, 191, 467, 495, 643, 990
BstACI GRCGYC 1 cut(s) 835
BstAFI CTTAAG 1 cut(s) 839
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 530, 922
BstDEI CTNAG 3 cut(s) 255, 357, 603
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 21, 662
BstHHI GCGC 2 cut(s) 20, 661
BstKTI GATC 2 cut(s) 118, 1017
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 2 cut(s) 115, 1014
BstMWI GCNNNNNNNGC 7 cut(s) 311, 346, 362, 658, 759, 905, 917
BstNI CCWGG 2 cut(s) 106, 941
BstNSI RCATGY 2 cut(s) 322, 693
BstSCI CCNGG 2 cut(s) 104, 939
BstSFI CTRYAG 1 cut(s) 909
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 512, 686, 895, 989
BstV2I GAAGAC 2 cut(s) 266, 1065
BstXI CCANNNNNNTGG 1 cut(s) 830
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 4 cut(s) 36, 66, 394, 783
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 4 cut(s) 232, 395, 472, 639
BveI ACCTGC 2 cut(s) 170, 692
Cac8I GCNNGC 2 cut(s) 530, 922
CaiI CAGNNNCTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 513
CfoI GCGC 2 cut(s) 20, 661
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 319, 514, 690
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 255, 357, 603
DpnI GATC 2 cut(s) 117, 1016
DpnII GATC 2 cut(s) 115, 1014
EaeI YGGCCR 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 133
Eco32I GATATC 2 cut(s) 400, 727
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 104, 939
EcoRV GATATC 2 cut(s) 400, 727
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 3 cut(s) 322, 517, 693
FaqI GGGAC 1 cut(s) 678
FatI CATG 3 cut(s) 318, 513, 689
FauI CCCGC 1 cut(s) 704
FauNDI CATATG 1 cut(s) 818
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 34, 526, 700, 909, 1003
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 5 cut(s) 34, 526, 700, 909, 1003
FspBI CTAG 2 cut(s) 194, 1076
GlaI GCGC 2 cut(s) 19, 660
GluI GCNGC 5 cut(s) 34, 526, 700, 909, 1003
HaeII RGCGCY 2 cut(s) 21, 662
HaeIII GGCC 4 cut(s) 36, 66, 394, 783
HapII CCGG 1 cut(s) 56
HhaI GCGC 2 cut(s) 20, 661
Hin1I GRCGYC 1 cut(s) 835
Hin1II CATG 3 cut(s) 322, 517, 693
Hin6I GCGC 2 cut(s) 18, 659
HinP1I GCGC 2 cut(s) 18, 659
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 2 cut(s) 204, 215
HinfI GANTC 4 cut(s) 28, 49, 813, 914
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 70, 77, 310
Hpy166II GTNNAC 3 cut(s) 145, 612, 833
Hpy188I TCNGA 5 cut(s) 175, 222, 258, 360, 802
Hpy188III TCNNGA 6 cut(s) 25, 56, 194, 211, 514, 746
Hpy8I GTNNAC 3 cut(s) 145, 612, 833
HpyAV CCTTC 2 cut(s) 295, 743
HpyCH4III ACNGT 7 cut(s) 43, 152, 191, 467, 495, 643, 990
HpyCH4IV ACGT 1 cut(s) 835
HpyF10VI GCNNNNNNNGC 7 cut(s) 311, 346, 362, 658, 759, 905, 917
HpyF3I CTNAG 3 cut(s) 255, 357, 603
HpySE526I ACGT 1 cut(s) 835
Hsp92I GRCGYC 1 cut(s) 835
Hsp92II CATG 3 cut(s) 322, 517, 693
HspAI GCGC 2 cut(s) 18, 659
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 1014
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 4 cut(s) 512, 686, 895, 989
LweI GCATC 3 cut(s) 81, 749, 1014
MaeI CTAG 2 cut(s) 194, 1076
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 3 cut(s) 83, 617, 643
MalI GATC 2 cut(s) 117, 1016
MboI GATC 2 cut(s) 115, 1014
MboII GAAGA 4 cut(s) 44, 67, 271, 1070
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 394
MluCI AATT 6 cut(s) 8, 245, 456, 535, 966, 1042
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 6 cut(s) 406, 547, 552, 598, 856, 1021
Mox20I TGGCCA 1 cut(s) 394
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 394
MseI TTAA 4 cut(s) 473, 705, 840, 993
MslI CAYNNNNRTG 2 cut(s) 707, 735
Msp20I TGGCCA 1 cut(s) 394
MspA1I CMGCKG 3 cut(s) 525, 566, 699
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 106, 941
MvaI CCWGG 2 cut(s) 106, 941
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 7 cut(s) 311, 346, 362, 658, 759, 905, 917
NdeI CATATG 1 cut(s) 818
NdeII GATC 2 cut(s) 115, 1014
NlaIII CATG 3 cut(s) 322, 517, 693
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 2 cut(s) 322, 693
NspV TTCGAA 1 cut(s) 47
OliI CACNNNNGTG 1 cut(s) 735
PagI TCATGA 1 cut(s) 513
PaqCI CACCTGC 1 cut(s) 170
PciI ACATGT 2 cut(s) 318, 689
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PfeI GAWTC 3 cut(s) 28, 49, 813
PkrI GCNGC 5 cut(s) 35, 527, 701, 910, 1004
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PscI ACATGT 2 cut(s) 318, 689
Psp6I CCWGG 2 cut(s) 104, 939
PspGI CCWGG 2 cut(s) 104, 939
PstI CTGCAG 1 cut(s) 913
PstNI CAGNNNCTG 1 cut(s) 162
PvuII CAGCTG 2 cut(s) 525, 566
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 707, 735
SaqAI TTAA 4 cut(s) 473, 705, 840, 993
SatI GCNGC 5 cut(s) 34, 526, 700, 909, 1003
Sau3AI GATC 2 cut(s) 115, 1014
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 2 cut(s) 106, 941
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 3 cut(s) 81, 749, 1014
SfcI CTRYAG 1 cut(s) 909
SfuI TTCGAA 1 cut(s) 47
SmiMI CAYNNNNRTG 2 cut(s) 707, 735
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 6 cut(s) 8, 245, 456, 535, 966, 1042
SsiI CCGC 3 cut(s) 33, 697, 918
SspMI CTAG 2 cut(s) 194, 1076
StyD4I CCNGG 2 cut(s) 104, 939
TaaI ACNGT 7 cut(s) 43, 152, 191, 467, 495, 643, 990
TaiI ACGT 1 cut(s) 838
TaqI TCGA 2 cut(s) 47, 212
TasI AATT 6 cut(s) 8, 245, 456, 535, 966, 1042
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 28, 49, 813
Tru1I TTAA 4 cut(s) 473, 705, 840, 993
Tru9I TTAA 4 cut(s) 473, 705, 840, 993
TscAI CASTG 4 cut(s) 239, 395, 472, 646
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 4 cut(s) 525, 699, 908, 1002
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 6 cut(s) 498, 502, 530, 786, 805, 1064
TspGWI ACGGA 1 cut(s) 825
TspRI CASTG 4 cut(s) 239, 395, 472, 646
Vha464I CTTAAG 1 cut(s) 839
XapI RAATTY 1 cut(s) 1042
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 2 cut(s) 322, 693
XspI CTAG 2 cut(s) 194, 1076
ZraI GACGTC 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.