Rroxscaffold_7G00172930

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006602
Physical Location & Seq
Reverse (-)
13035839 .. 13040449
4611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172930.1

Sequence Viewer

Length: 1236 bp
ATGGTGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCTAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCACCAAAGACTTCTATCCAGGATCGGTTCTTGTGAATTCTCAGAAGTCTGAATGGAAACTGCACCGTTTCGAATATGAAGCTTTCTCGAAGCTTCCCGTTGAGTTCCGTCATCAAATTAAACCTCCTATTCGTCTCACGATCGGACTCCACTGCCGTTCAAAATTACAATCTCAGAAGACTATTCCTACTTCTGCTATGGACAACTACGATTTGGTGAAGGCTTTGGTGGCTCACATGTCAAAGATTGATGATGAGCAAAGGTGGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGCATTCAATGCACACACAATTTATGACAGTGGATTAAAGCATTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGGTCAGTATGATGATTCCCACGAAAGTGCAGTTCTGGAAGGCTACCGATGCACACATAATGAATGTGATGGCCTTTTGCTTTGCAACTCTGATGATAATGGATTCATATGCCAACAATGCGGACGTCTTAAGAGCAAAGAAGAGATACGAGAGATGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCATATAGCTGCAGAGTCTGCAAGCTCTTATATCACTTACCAGGAAGTAATAGTTCTGTATAAGGCAATCGAGACACTCCAAAGGCAACTGTTTAATCCTTGCTGCATCTATTTGATCCCAACTTGGGAGGGGATTATAGAGAATTCAATGAAGCTGGAAGACTGGAGTGAAGCTCTAGCATATTGCAGATGGACCATTGCAGTGTATCAAAGAGTATATCGAAACTTTCAATCCTTTCATCCTTCACTTGGATTGCAATACTATACCTGTGGGAAGCTTGAAGGGGTACTTGGAGAGGCTGAGAATGCTGTGAAATCTCTTACCAAGGCAGTCGATATACTGCAGATTACTTATGGGACAAGTACACCCTTCATGAAGGATCTTTTCAGTATGTTGGAGGACCAACGTGAAATTGAAGCTCTAATCAATGGAACAGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

411

Amino Acids

46.86

Weight (kDa)

6.2

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 201 1.7e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 730
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 33, 723
AclWI GGATC 3 cut(s) 109, 901, 1179
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 2 cut(s) 115, 934
AcuI CTGAAG 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 727
AfaI GTAC 2 cut(s) 1080, 1156
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 62, 916, 1040
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 7 cut(s) 240, 429, 442, 939, 1022, 1073, 1208
AjnI CCWGG 2 cut(s) 97, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AleI CACNNNNGTG 1 cut(s) 627
Alw26I GTCTC 2 cut(s) 218, 857
AlwI GGATC 3 cut(s) 109, 901, 1179
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 4 cut(s) 34, 64, 389, 673
ApeKI GCWGC 3 cut(s) 522, 800, 894
ApoI RAATTY 2 cut(s) 115, 934
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 984, 1192
AsuHPI GGTGA 2 cut(s) 70, 307
AsuII TTCGAA 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 984, 1192
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BalI TGGCCA 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 263, 957
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 3 cut(s) 509, 787, 881
BccI CCATC 5 cut(s) 352, 427, 665, 751, 975
BceAI ACGGC 2 cut(s) 51, 219
BciT130I CCWGG 2 cut(s) 99, 833
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 218, 857
BfaI CTAG 2 cut(s) 968, 1234
BfmI CTRYAG 2 cut(s) 801, 1133
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 731
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 4 cut(s) 34, 523, 801, 895
BlsI GCNGC 4 cut(s) 35, 524, 802, 896
Bme1390I CCNGG 2 cut(s) 99, 833
Bme18I GGWCC 2 cut(s) 984, 1192
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 984, 1192
BmrFI CCNGG 2 cut(s) 99, 833
BmsI GCATC 3 cut(s) 81, 641, 906
BpiI GAAGAC 2 cut(s) 263, 957
BplI GAGNNNNNCTC 2 cut(s) 949, 981
BpmI CTGGAG 1 cut(s) 976
Bpu10I CCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 1116
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 916, 1040
Bse1I ACTGG 1 cut(s) 959
Bse3DI GCAATG 2 cut(s) 776, 987
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 99, 833
BseDI CCNNGG 1 cut(s) 1116
BseGI GGATG 1 cut(s) 1030
BseLI CCNNNNNNNGG 3 cut(s) 62, 916, 1040
BseMI GCAATG 2 cut(s) 776, 987
BseMII CTCAG 5 cut(s) 134, 266, 368, 591, 1083
BseNI ACTGG 1 cut(s) 959
BseXI GCAGC 3 cut(s) 509, 787, 881
BsgI GTGCAG 2 cut(s) 125, 651
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 4 cut(s) 36, 66, 391, 675
BsiEI CGRYCG 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 1162
BslI CCNNNNNNNGG 3 cut(s) 62, 916, 1040
BsmAI GTCTC 2 cut(s) 218, 857
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 1162
BsmI GAATGC 2 cut(s) 437, 1102
BsnI GGCC 4 cut(s) 36, 66, 391, 675
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 4 cut(s) 101, 219, 906, 1171
BspACI CCGC 2 cut(s) 33, 723
BspANI GGCC 4 cut(s) 36, 66, 391, 675
BspCNI CTCAG 5 cut(s) 133, 265, 367, 592, 1084
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 2 cut(s) 510, 1164
BspMAI CTGCAG 2 cut(s) 805, 1137
BspPI GGATC 3 cut(s) 109, 901, 1179
BspT104I TTCGAA 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 776, 987
BsrI ACTGG 1 cut(s) 959
BssECI CCNNGG 1 cut(s) 1116
BssMI GATC 4 cut(s) 101, 219, 906, 1171
BssNI GRCGYC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 1116
Bst2UI CCWGG 2 cut(s) 99, 833
Bst4CI ACNGT 5 cut(s) 43, 146, 464, 492, 882
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 1 cut(s) 727
BstAFI CTTAAG 1 cut(s) 731
BstAPI GCANNNNNTGC 2 cut(s) 443, 809
BstBI TTCGAA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 527, 814
BstDEI CTNAG 5 cut(s) 120, 252, 354, 600, 1092
BstF5I GGATG 1 cut(s) 1030
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 4 cut(s) 104, 222, 909, 1174
BstMAI GTCTC 2 cut(s) 218, 857
BstMBI GATC 4 cut(s) 101, 219, 906, 1171
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 9 cut(s) 308, 343, 359, 443, 651, 720, 797, 809, 1097
BstNI CCWGG 2 cut(s) 99, 833
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 97, 831
BstSFI CTRYAG 2 cut(s) 801, 1133
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 509, 787, 881
BstV2I GAAGAC 2 cut(s) 263, 957
BstX2I RGATCY 1 cut(s) 1171
BstYI RGATCY 1 cut(s) 1171
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 4 cut(s) 36, 66, 391, 675
BtsCI GGATG 1 cut(s) 1030
BtsI GCAGTG 2 cut(s) 229, 999
BtsIMutI CAGTG 4 cut(s) 229, 392, 469, 999
Cac8I GCNNGC 2 cut(s) 527, 814
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 2 cut(s) 510, 1164
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 984, 1192
Csp6I GTAC 2 cut(s) 1079, 1155
CviAII CATG 3 cut(s) 316, 511, 1165
CviQI GTAC 2 cut(s) 1079, 1155
DdeI CTNAG 5 cut(s) 120, 252, 354, 600, 1092
DpnI GATC 4 cut(s) 103, 221, 908, 1173
DpnII GATC 4 cut(s) 101, 219, 906, 1171
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 1116
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 984, 1192
Eco47III AGCGCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 2 cut(s) 115, 934
EcoRII CCWGG 2 cut(s) 97, 831
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 1116
ErhI CCWWGG 1 cut(s) 1116
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 3 cut(s) 319, 514, 1168
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FaqI GGGAC 1 cut(s) 1162
FatI CATG 3 cut(s) 315, 510, 1164
FauNDI CATATG 1 cut(s) 710
Fnu4HI GCNGC 4 cut(s) 34, 523, 801, 895
FokI GGATG 1 cut(s) 1017
Fsp4HI GCNGC 4 cut(s) 34, 523, 801, 895
FspBI CTAG 2 cut(s) 968, 1234
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 34, 523, 801, 895
GsuI CTGGAG 1 cut(s) 976
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 36, 66, 391, 675
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 727
Hin1II CATG 3 cut(s) 319, 514, 1168
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 3 cut(s) 159, 170, 1067
HinfI GANTC 5 cut(s) 28, 225, 617, 705, 806
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 70, 307
Hpy166II GTNNAC 1 cut(s) 1157
Hpy188I TCNGA 6 cut(s) 123, 130, 224, 255, 357, 694
Hpy188III TCNNGA 8 cut(s) 25, 56, 166, 217, 511, 638, 862, 1165
Hpy8I GTNNAC 1 cut(s) 1157
HpyAV CCTTC 6 cut(s) 292, 635, 1044, 1067, 1162, 1171
HpyCH4III ACNGT 5 cut(s) 43, 146, 464, 492, 882
HpyCH4IV ACGT 2 cut(s) 727, 1198
HpyF10VI GCNNNNNNNGC 9 cut(s) 308, 343, 359, 443, 651, 720, 797, 809, 1097
HpyF3I CTNAG 5 cut(s) 120, 252, 354, 600, 1092
HpySE526I ACGT 2 cut(s) 727, 1198
Hsp92I GRCGYC 1 cut(s) 727
Hsp92II CATG 3 cut(s) 319, 514, 1168
HspAI GCGC 1 cut(s) 18
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 4 cut(s) 101, 219, 906, 1171
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 3 cut(s) 509, 787, 881
LweI GCATC 3 cut(s) 81, 641, 906
MaeI CTAG 2 cut(s) 968, 1234
MaeII ACGT 2 cut(s) 727, 1198
MalI GATC 4 cut(s) 103, 221, 908, 1173
MboI GATC 4 cut(s) 101, 219, 906, 1171
MboII GAAGA 6 cut(s) 44, 67, 268, 560, 755, 962
MflI RGATCY 1 cut(s) 1171
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 8 cut(s) 8, 115, 195, 242, 453, 532, 934, 1203
MluNI TGGCCA 1 cut(s) 391
MlyI GAGTC 2 cut(s) 219, 815
MmeI TCCRAC 1 cut(s) 1167
MnlI CCTC 8 cut(s) 213, 403, 544, 549, 595, 913, 1081, 1183
Mox20I TGGCCA 1 cut(s) 391
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 391
MseI TTAA 4 cut(s) 198, 470, 732, 885
MslI CAYNNNNRTG 2 cut(s) 627, 992
Msp20I TGGCCA 1 cut(s) 391
MspA1I CMGCKG 2 cut(s) 522, 563
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 99, 833
Mva1269I GAATGC 2 cut(s) 437, 1102
MvaI CCWGG 2 cut(s) 99, 833
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 9 cut(s) 308, 343, 359, 443, 651, 720, 797, 809, 1097
NdeI CATATG 1 cut(s) 710
NdeII GATC 4 cut(s) 101, 219, 906, 1171
NlaIII CATG 3 cut(s) 319, 514, 1168
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 627
PagI TCATGA 2 cut(s) 510, 1164
PciI ACATGT 1 cut(s) 315
PctI GAATGC 2 cut(s) 437, 1102
PfeI GAWTC 3 cut(s) 28, 617, 705
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 4 cut(s) 35, 524, 802, 896
Ple19I CGATCG 1 cut(s) 222
PleI GAGTC 2 cut(s) 219, 814
PpsI GAGTC 2 cut(s) 219, 814
PscI ACATGT 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 97, 831
PspGI CCWGG 2 cut(s) 97, 831
PspPI GGNCC 2 cut(s) 984, 1192
PstI CTGCAG 2 cut(s) 805, 1137
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 1171
PvuI CGATCG 1 cut(s) 222
PvuII CAGCTG 2 cut(s) 522, 563
RsaI GTAC 2 cut(s) 1080, 1156
RsaNI GTAC 2 cut(s) 1079, 1155
RseI CAYNNNNRTG 2 cut(s) 627, 992
SaqAI TTAA 4 cut(s) 198, 470, 732, 885
SatI GCNGC 4 cut(s) 34, 523, 801, 895
Sau3AI GATC 4 cut(s) 101, 219, 906, 1171
Sau96I GGNCC 2 cut(s) 984, 1192
SchI GAGTC 2 cut(s) 219, 815
ScrFI CCNGG 2 cut(s) 99, 833
SfaNI GCATC 3 cut(s) 81, 641, 906
SfcI CTRYAG 2 cut(s) 801, 1133
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 2 cut(s) 984, 1192
SmiMI CAYNNNNRTG 2 cut(s) 627, 992
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 8 cut(s) 8, 115, 195, 242, 453, 532, 934, 1203
SsiI CCGC 2 cut(s) 33, 723
SspMI CTAG 2 cut(s) 968, 1234
StyD4I CCNGG 2 cut(s) 97, 831
StyI CCWWGG 1 cut(s) 1116
TaaI ACNGT 5 cut(s) 43, 146, 464, 492, 882
TaiI ACGT 2 cut(s) 730, 1201
TaqI TCGA 5 cut(s) 150, 167, 861, 1012, 1125
TasI AATT 8 cut(s) 8, 115, 195, 242, 453, 532, 934, 1203
TatI WGTACW 1 cut(s) 1154
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 28, 617, 705
Tru1I TTAA 4 cut(s) 198, 470, 732, 885
Tru9I TTAA 4 cut(s) 198, 470, 732, 885
TscAI CASTG 4 cut(s) 236, 392, 469, 999
TseI GCWGC 3 cut(s) 522, 800, 894
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 4 cut(s) 236, 392, 469, 999
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 984, 1192
XapI RAATTY 2 cut(s) 115, 934
XceI RCATGY 1 cut(s) 319
XspI CTAG 2 cut(s) 968, 1234
ZraI GACGTC 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.