FvH4_2g26280

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
21145732 .. 21150175
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26280.t1

Sequence Viewer

Length: 1449 bp
ATGATGGAGGAATTGCAGAGCTCTCTCGGCAATCGTGGCCTAACCGTTTCGAAACTTCCAGAGAAAGGCCGTTGCCTGCTCACCACCAAAGACTTCTACCCAGGGGATGTGATCATAAGCCAAGAGCCCTACGTGCACGTCCCCAACAACTCCGCCGATAACTCCAAGTGCGATGCTTGCTTCGAATCCAGCCACCTCATGAAGTGCTCCCGTTGCCAGGTCGTCTACTACTGCTCCGCTACTTGCCAGAAGTCGGAGTGGAAGCTGCACCGTCTCGAATGCGAAGCTCTCTCGAAGGTTCCAAAGGAGAAGCGAAGGGCGGTGACGCCTTCTCTCCGTCTTATGATCCGACTCTACTGTCGTTCAAAGCTTCAGTCTCAGAAGACTATTCCTACTTCTGCTATGGACAATTACGGTTTGGTGGAGGCGTTGGTGGCTCACATGTCGGAGGTTGATGAGAAGCAAATGGTGCTGTATGCTCAGATGGCTAACCTTGTCAACTTCATACTTGAGCGGCCTGATATCAATATAAAAGAGATTGCGGAGAACTTCTCAAAGTTTGCGTGCAATGCACACACAATTTGTGACAGTGAATTGAAACCCCTAGGTACAGGACTATATCCTGTCATATCAATCATTAACCACAGCTGCTTGCCGAATTCTGTTCTATTATTTGAGGGAAAGACAGCTGTTGTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGATAAGTTACATCGACACTGCTGGAAGCACTGCGACTCGGCAGAAGGCATTGAAGGAACAATACCTTTTTACCTGTGCATGTCCCCTCTGCATTAAAGCGGGTCATTACGAGGATATCAAAGAAAGTGCAATACTGGAAGGCTACCGATGCAATGATAATAAATGTGACGGTTTTTTGCTCCGGGACTCTGATGACAATGGATTCATATGCCAAAAATGTGGATGTCTTAAGAGAAAAGAAAACATAATAGAGATGGAAAGTGAAATAAGATCATTGCAGGAAAAGGGTGTCCGAGCTGTAGAATCGGCACCCACAATCACTTACCATGAAGTTATAGCAATTTTGAAGGCAATGGAGACACTCCAGAGGTATCTGTGTCATAATTTTTGTGTTTATTTGTTACCAACTTGGGAGGAGCTTATAAAGAATTTGATGAAGGTAGAAGAGTGGAGTGAAGCTCTAGCATATTGCAGATTGACTATTCCAGTGTATCAAAGAGTATATCCAGGCTTTCATCCTTCTCTTGGATTGCAATACTATACCTGTGGAAAGCTCGAATGGTTACTTGGAGAAACTGATGATGCTTTGAAATCTCTGACCAAGGCAGTAGATATACTGCGTATTACTCATGGGACAAGTACACCATTCATGAAGGACCTTTTCAGGAGGTTGGAGGAGGCACGTGCTGAAGCATTCATCAACGGAGTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

54.59

Weight (kDa)

6.65

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 23 - 248 1e-10 SET domain
zf-MYND PF01753 57 - 94 5.1e-10 MYND finger
TPR_12 PF13424 381 - 452 6.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1157
AasI GACNNNNNNGTC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 1042
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 225
AciI CCGC 6 cut(s) 153, 237, 320, 514, 542, 833
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 2 cut(s) 658, 1162
AcuI CTGAAG 2 cut(s) 356, 1443
AcvI CACGTG 1 cut(s) 1418
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 2 cut(s) 610, 1375
AfiI CCNNNNNNNGG 4 cut(s) 65, 217, 253, 1259
AflII CTTAAG 1 cut(s) 962
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 5 cut(s) 366, 598, 787, 1081, 1324
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 3 cut(s) 100, 216, 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 1284, 1316
Alw21I GWGCWC 3 cut(s) 23, 138, 209
Alw26I GTCTC 3 cut(s) 278, 381, 1085
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 340
AoxI GGCC 3 cut(s) 37, 67, 515
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 265, 648
ApoI RAATTY 2 cut(s) 658, 1162
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspA2I CCTAGG 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 1390
AsuC2I CCSGG 1 cut(s) 917
AsuHPI GGTGA 2 cut(s) 73, 334
AsuII TTCGAA 2 cut(s) 50, 183
AvaII GGWCC 1 cut(s) 1390
AvrII CCTAGG 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 1042
BanII GRGCYC 2 cut(s) 23, 129
BarI GAAGNNNNNNTAC 2 cut(s) 779, 811
BbrPI CACGTG 1 cut(s) 1418
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 3 cut(s) 23, 138, 209
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 2 cut(s) 252, 635
BccI CCATC 2 cut(s) 478, 982
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 3 cut(s) 102, 218, 1242
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 917
BcoDI GTCTC 3 cut(s) 278, 381, 1085
BfaI CTAG 2 cut(s) 605, 1196
BfmI CTRYAG 1 cut(s) 1032
BfrI CTTAAG 1 cut(s) 962
BisI GCNGC 3 cut(s) 266, 515, 649
BlnI CCTAGG 1 cut(s) 604
BlsI GCNGC 3 cut(s) 267, 516, 650
Bme1390I CCNGG 4 cut(s) 102, 218, 917, 1242
Bme18I GGWCC 1 cut(s) 1390
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 1390
BmiI GGNNCC 2 cut(s) 300, 1044
BmrFI CCNGG 4 cut(s) 102, 218, 917, 1242
BmsI GCATC 3 cut(s) 163, 872, 1306
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 4 cut(s) 536, 568, 1177, 1209
BpmI CTGGAG 1 cut(s) 1082
Bpu10I CCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 2 cut(s) 50, 183
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 917
BsaAI YACGTR 2 cut(s) 133, 1418
BsaHI GRCGYC 1 cut(s) 326
BsaJI CCNNGG 4 cut(s) 100, 101, 604, 1335
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 714, 744
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 217, 253, 1259
Bse1I ACTGG 2 cut(s) 873, 1220
Bse3DI GCAATG 4 cut(s) 574, 892, 1007, 1092
BseBI CCWGG 3 cut(s) 102, 218, 1242
BseDI CCNNGG 4 cut(s) 100, 101, 604, 1335
BseGI GGATG 3 cut(s) 112, 962, 1249
BseLI CCNNNNNNNGG 4 cut(s) 65, 217, 253, 1259
BseMI GCAATG 4 cut(s) 574, 892, 1007, 1092
BseMII CTCAG 3 cut(s) 392, 494, 717
BseNI ACTGG 2 cut(s) 873, 1220
BseRI GAGGAG 2 cut(s) 1163, 1424
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 252, 635
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 3 cut(s) 39, 69, 517
BshNI GGYRCC 1 cut(s) 1042
BsiHKAI GWGCWC 3 cut(s) 23, 138, 209
BsiSI CCGG 1 cut(s) 916
BslFI GGGAC 4 cut(s) 125, 801, 932, 1381
BslI CCNNNNNNNGG 4 cut(s) 65, 217, 253, 1259
BsmAI GTCTC 3 cut(s) 278, 381, 1085
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 4 cut(s) 125, 801, 932, 1381
BsmI GAATGC 2 cut(s) 284, 1427
BsnI GGCC 3 cut(s) 39, 69, 517
Bsp119I TTCGAA 2 cut(s) 50, 183
Bsp1286I GDGCHC 4 cut(s) 23, 129, 138, 209
Bsp143I GATC 3 cut(s) 111, 345, 1004
BspACI CCGC 6 cut(s) 153, 237, 320, 514, 542, 833
BspANI GGCC 3 cut(s) 39, 69, 517
BspCNI CTCAG 3 cut(s) 391, 493, 718
BspHI TCATGA 2 cut(s) 198, 1383
BspLI GGNNCC 2 cut(s) 300, 1044
BspPI GGATC 1 cut(s) 340
BspT104I TTCGAA 2 cut(s) 50, 183
BspT107I GGYRCC 1 cut(s) 1042
BspTI CTTAAG 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 514
BsrDI GCAATG 4 cut(s) 574, 892, 1007, 1092
BsrI ACTGG 2 cut(s) 873, 1220
BssECI CCNNGG 4 cut(s) 100, 101, 604, 1335
BssMI GATC 3 cut(s) 111, 345, 1004
BssNI GRCGYC 1 cut(s) 326
BssT1I CCWWGG 2 cut(s) 604, 1335
Bst2UI CCWGG 3 cut(s) 102, 218, 1242
Bst4CI ACNGT 6 cut(s) 46, 272, 359, 416, 590, 905
Bst6I CTCTTC 1 cut(s) 1173
BstACI GRCGYC 1 cut(s) 326
BstAFI CTTAAG 1 cut(s) 962
BstAPI GCANNNNNTGC 1 cut(s) 469
BstBAI YACGTR 2 cut(s) 133, 1418
BstBI TTCGAA 2 cut(s) 50, 183
BstC8I GCNNGC 4 cut(s) 77, 178, 565, 653
BstDEI CTNAG 3 cut(s) 378, 480, 726
BstF5I GGATG 3 cut(s) 112, 962, 1249
BstKTI GATC 3 cut(s) 114, 348, 1007
BstMAI GTCTC 3 cut(s) 278, 381, 1085
BstMBI GATC 3 cut(s) 111, 345, 1004
BstNI CCWGG 3 cut(s) 102, 218, 1242
BstNSI RCATGY 2 cut(s) 445, 816
BstSCI CCNGG 4 cut(s) 100, 216, 915, 1240
BstSFI CTRYAG 1 cut(s) 1032
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 252, 635
BstV2I GAAGAC 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 953
BsuRI GGCC 3 cut(s) 39, 69, 517
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 112, 962, 1249
BtsI GCAGTG 2 cut(s) 750, 762
BtsIMutI CAGTG 4 cut(s) 595, 750, 762, 1227
Cac8I GCNNGC 4 cut(s) 77, 178, 565, 653
CciI TCATGA 2 cut(s) 198, 1383
Cfr13I GGNCC 1 cut(s) 1390
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 609, 1374
CviAII CATG 6 cut(s) 199, 442, 813, 1061, 1364, 1384
CviQI GTAC 2 cut(s) 609, 1374
DdeI CTNAG 3 cut(s) 378, 480, 726
DpnI GATC 3 cut(s) 113, 347, 1006
DpnII GATC 3 cut(s) 111, 345, 1004
DrdI GACNNNNNNGTC 1 cut(s) 357
DseDI GACNNNNNNGTC 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 1173
EarI CTCTTC 1 cut(s) 1173
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 604, 1335
Eco24I GRGCYC 2 cut(s) 23, 129
Eco32I GATATC 2 cut(s) 523, 850
Eco47I GGWCC 1 cut(s) 1390
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 2 cut(s) 356, 1443
Eco72I CACGTG 1 cut(s) 1418
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 1390
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 3 cut(s) 100, 216, 1240
EcoRV GATATC 2 cut(s) 523, 850
EcoT14I CCWWGG 2 cut(s) 604, 1335
EcoT38I GRGCYC 2 cut(s) 23, 129
ErhI CCWWGG 2 cut(s) 604, 1335
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 6 cut(s) 202, 445, 816, 1064, 1367, 1387
FaqI GGGAC 4 cut(s) 125, 801, 932, 1381
FatI CATG 6 cut(s) 198, 441, 812, 1060, 1363, 1383
FauI CCCGC 1 cut(s) 826
FauNDI CATATG 1 cut(s) 941
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 266, 515, 649
FokI GGATG 3 cut(s) 119, 969, 1236
FriOI GRGCYC 2 cut(s) 23, 129
Fsp4HI GCNGC 3 cut(s) 266, 515, 649
FspBI CTAG 2 cut(s) 605, 1196
GluI GCNGC 3 cut(s) 266, 515, 649
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 3 cut(s) 39, 69, 517
HapII CCGG 1 cut(s) 916
HgaI GACGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 6 cut(s) 202, 445, 816, 1064, 1367, 1387
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 6 cut(s) 185, 351, 769, 920, 936, 1037
HpaII CCGG 1 cut(s) 916
HphI GGTGA 2 cut(s) 73, 334
Hpy166II GTNNAC 4 cut(s) 136, 226, 499, 1376
Hpy188I TCNGA 8 cut(s) 256, 350, 381, 448, 483, 925, 1028, 1332
Hpy188III TCNNGA 7 cut(s) 59, 199, 275, 292, 1099, 1384, 1399
Hpy8I GTNNAC 4 cut(s) 136, 226, 499, 1376
HpyCH4III ACNGT 6 cut(s) 46, 272, 359, 416, 590, 905
HpyCH4IV ACGT 3 cut(s) 132, 138, 1417
HpyF3I CTNAG 3 cut(s) 378, 480, 726
HpySE526I ACGT 3 cut(s) 132, 138, 1417
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 6 cut(s) 202, 445, 816, 1064, 1367, 1387
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 111, 345, 1004
LmnI GCTCC 5 cut(s) 212, 239, 722, 918, 1150
Lsp1109I GCAGC 2 cut(s) 252, 635
LweI GCATC 3 cut(s) 163, 872, 1306
MaeI CTAG 2 cut(s) 605, 1196
MaeII ACGT 3 cut(s) 132, 138, 1417
MaeIII GTNAC 6 cut(s) 322, 584, 740, 899, 1134, 1296
MalI GATC 3 cut(s) 113, 347, 1006
MbiI CCGCTC 1 cut(s) 514
MboI GATC 3 cut(s) 111, 345, 1004
MboII GAAGA 2 cut(s) 394, 1190
MhlI GDGCHC 4 cut(s) 23, 129, 138, 209
MluCI AATT 8 cut(s) 11, 409, 579, 593, 658, 1074, 1117, 1162
MlyI GAGTC 3 cut(s) 345, 763, 914
MmeI TCCRAC 4 cut(s) 234, 373, 426, 1386
MseI TTAA 3 cut(s) 639, 828, 963
MspA1I CMGCKG 2 cut(s) 648, 689
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 1 cut(s) 916
MspR9I CCNGG 4 cut(s) 102, 218, 917, 1242
Mva1269I GAATGC 2 cut(s) 284, 1427
MvaI CCWGG 3 cut(s) 102, 218, 1242
NciI CCSGG 1 cut(s) 917
NdeI CATATG 1 cut(s) 941
NdeII GATC 3 cut(s) 111, 345, 1004
NlaIII CATG 6 cut(s) 202, 445, 816, 1064, 1367, 1387
NlaIV GGNNCC 2 cut(s) 300, 1044
NmeAIII GCCGAG 2 cut(s) 6, 751
NmuCI GTSAC 3 cut(s) 322, 584, 899
NspI RCATGY 2 cut(s) 445, 816
NspV TTCGAA 2 cut(s) 50, 183
PagI TCATGA 2 cut(s) 198, 1383
PasI CCCWGGG 1 cut(s) 101
PciI ACATGT 1 cut(s) 441
PctI GAATGC 2 cut(s) 284, 1427
PfeI GAWTC 3 cut(s) 185, 936, 1037
PfoI TCCNGGA 1 cut(s) 915
PkrI GCNGC 3 cut(s) 267, 516, 650
PleI GAGTC 3 cut(s) 345, 763, 914
PmaCI CACGTG 1 cut(s) 1418
PmlI CACGTG 1 cut(s) 1418
PpsI GAGTC 3 cut(s) 345, 763, 914
Ppu21I YACGTR 2 cut(s) 133, 1418
PpuMI RGGWCCY 1 cut(s) 1390
PscI ACATGT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 1157
Psp124BI GAGCTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 1390
Psp6I CCWGG 3 cut(s) 100, 216, 1240
PspCI CACGTG 1 cut(s) 1418
PspGI CCWGG 3 cut(s) 100, 216, 1240
PspN4I GGNNCC 2 cut(s) 300, 1044
PspPI GGNCC 1 cut(s) 1390
PspPPI RGGWCCY 1 cut(s) 1390
PvuII CAGCTG 2 cut(s) 648, 689
RsaI GTAC 2 cut(s) 610, 1375
RsaNI GTAC 2 cut(s) 609, 1374
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 639, 828, 963
SatI GCNGC 3 cut(s) 266, 515, 649
Sau3AI GATC 3 cut(s) 111, 345, 1004
Sau96I GGNCC 1 cut(s) 1390
SchI GAGTC 3 cut(s) 345, 763, 914
ScrFI CCNGG 4 cut(s) 102, 218, 917, 1242
SduI GDGCHC 4 cut(s) 23, 129, 138, 209
SfaNI GCATC 3 cut(s) 163, 872, 1306
SfcI CTRYAG 1 cut(s) 1032
SfuI TTCGAA 2 cut(s) 50, 183
SinI GGWCC 1 cut(s) 1390
SmlI CTYRAG 2 cut(s) 509, 962
SmoI CTYRAG 2 cut(s) 509, 962
Sse9I AATT 8 cut(s) 11, 409, 579, 593, 658, 1074, 1117, 1162
SsiI CCGC 6 cut(s) 153, 237, 320, 514, 542, 833
SspMI CTAG 2 cut(s) 605, 1196
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 4 cut(s) 100, 216, 915, 1240
StyI CCWWGG 2 cut(s) 604, 1335
TaaI ACNGT 6 cut(s) 46, 272, 359, 416, 590, 905
TaiI ACGT 3 cut(s) 135, 141, 1420
TaqI TCGA 6 cut(s) 50, 183, 276, 293, 747, 1290
TasI AATT 8 cut(s) 11, 409, 579, 593, 658, 1074, 1117, 1162
TatI WGTACW 1 cut(s) 1373
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 185, 936, 1037
Tru1I TTAA 3 cut(s) 639, 828, 963
Tru9I TTAA 3 cut(s) 639, 828, 963
TscAI CASTG 4 cut(s) 595, 757, 769, 1227
TseFI GTSAC 3 cut(s) 322, 584, 899
TseI GCWGC 2 cut(s) 265, 648
Tsp45I GTSAC 3 cut(s) 322, 584, 899
TspDTI ATGAA 9 cut(s) 215, 493, 928, 1077, 1184, 1238, 1372, 1400, 1420
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 4 cut(s) 595, 757, 769, 1227
Vha464I CTTAAG 1 cut(s) 962
VneI GTGCAC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 1390
XapI RAATTY 2 cut(s) 658, 1162
XceI RCATGY 2 cut(s) 445, 816
XmaJI CCTAGG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 605, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.