Rh4BG161800

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006602
Physical Location & Seq
Reverse (-)
29139557 .. 29145214
5658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG161800.1

Sequence Viewer

Length: 603 bp
ATGGCTAACCTTGTCAGCTTGATACTTCAGTGGTCAGATATCAATAAAAAAGAGGTTGCAGAGAACTTTTCAAAGATGGTATTCAATCCACACACAATTTATGACAGTGGATTAAAGCACTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTAACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCACGAAAGTGCAGTTCTGGAAGGCTACCGATGCACACATAATGAATGCGATGGCCTTTTGCTTTGCAACTCTGATGATAATGGATTCATATGCCAACAATGTGGACGTCTTAAGAGCAAAAAAGAGATACAAGAGGTGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATTGCTGCAGAGTCCGCAAGGTCTTATTATCACTTACCAGGAAGTAATAGCTCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

8.04

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 34 - 87 1.4e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 332
AciI CCGC 2 cut(s) 337, 558
AcuI CTGAAG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 475
AflII CTTAAG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 2 cut(s) 72, 85
AjnI CCWGG 1 cut(s) 580
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 5 cut(s) 18, 165, 206, 242, 594
AluI AGCT 5 cut(s) 18, 165, 206, 242, 594
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 3 cut(s) 165, 339, 548
AspLEI GCGC 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 14, 47
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 152, 326, 535
BccI CCATC 2 cut(s) 70, 413
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 302
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 147
BisI GCNGC 3 cut(s) 166, 340, 549
BlsI GCNGC 3 cut(s) 167, 341, 550
Bme1390I CCNGG 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse3DI GCAATG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 582
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 234
BseXI GCAGC 3 cut(s) 152, 326, 535
BsgI GTGCAG 2 cut(s) 310, 399
BshFI GGCC 1 cut(s) 423
BslFI GGGAC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 1 cut(s) 423
BspACI CCGC 2 cut(s) 337, 558
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 524
BssNI GRCGYC 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 3 cut(s) 107, 135, 283
BstACI GRCGYC 1 cut(s) 475
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 298, 399, 545, 557
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 152, 326, 535
BstXI CCANNNNNNTGG 1 cut(s) 470
BsuI GTATCC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 35, 112, 279
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 170
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 301
CviAII CATG 2 cut(s) 154, 330
CviJI RGCY 9 cut(s) 5, 18, 165, 206, 242, 393, 423, 539, 594
CviKI_1 RGCY 9 cut(s) 5, 18, 165, 206, 242, 393, 423, 539, 594
DdeI CTNAG 1 cut(s) 243
Eco32I GATATC 2 cut(s) 40, 367
Eco57I CTGAAG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 2 cut(s) 40, 367
FaeI CATG 2 cut(s) 157, 333
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 153, 329
FauI CCCGC 1 cut(s) 344
FauNDI CATATG 1 cut(s) 458
Fnu4HI GCNGC 3 cut(s) 166, 340, 549
Fsp4HI GCNGC 3 cut(s) 166, 340, 549
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 166, 340, 549
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 1 cut(s) 423
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 475
Hin1II CATG 2 cut(s) 157, 333
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 453, 554
Hpy166II GTNNAC 2 cut(s) 252, 473
Hpy188I TCNGA 2 cut(s) 37, 442
Hpy188III TCNNGA 2 cut(s) 154, 386
Hpy8I GTNNAC 2 cut(s) 252, 473
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 107, 135, 283
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 9 cut(s) 59, 223, 327, 342, 380, 402, 435, 529, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 399, 545, 557
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 1 cut(s) 475
Hsp92II CATG 2 cut(s) 157, 333
HspAI GCGC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 153, 337, 371, 515, 567, 594
Lsp1109I GCAGC 3 cut(s) 152, 326, 535
LweI GCATC 1 cut(s) 389
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 257, 283
MboII GAAGA 1 cut(s) 203
MluCI AATT 2 cut(s) 96, 175
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 5 cut(s) 46, 187, 192, 238, 496
MseI TTAA 3 cut(s) 113, 345, 480
MslI CAYNNNNRTG 2 cut(s) 347, 375
MspA1I CMGCKG 3 cut(s) 165, 206, 339
MspCI CTTAAG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 298, 399, 545, 557
NdeI CATATG 1 cut(s) 458
NlaIII CATG 2 cut(s) 157, 333
NmeAIII GCCGAG 1 cut(s) 268
NspI RCATGY 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 375
PagI TCATGA 1 cut(s) 153
PciI ACATGT 1 cut(s) 329
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 3 cut(s) 167, 341, 550
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PscI ACATGT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PstI CTGCAG 1 cut(s) 553
PvuII CAGCTG 2 cut(s) 165, 206
RseI CAYNNNNRTG 2 cut(s) 347, 375
SaqAI TTAA 3 cut(s) 113, 345, 480
SatI GCNGC 3 cut(s) 166, 340, 549
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 582
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 347, 375
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 96, 175
SsiI CCGC 2 cut(s) 337, 558
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 3 cut(s) 107, 135, 283
TaiI ACGT 1 cut(s) 478
TasI AATT 2 cut(s) 96, 175
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 3 cut(s) 113, 345, 480
Tru9I TTAA 3 cut(s) 113, 345, 480
TscAI CASTG 3 cut(s) 35, 112, 286
TseI GCWGC 3 cut(s) 165, 339, 548
TspDTI ATGAA 5 cut(s) 138, 142, 170, 426, 445
TspRI CASTG 3 cut(s) 35, 112, 286
Vha464I CTTAAG 1 cut(s) 479
XceI RCATGY 1 cut(s) 333
ZraI GACGTC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.