AT2G17900

MYND finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006602
Physical Location & Seq
Reverse (-)
7773220 .. 7776825
3606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17900.1

Sequence Viewer

Length: 1458 bp
ATGGAAGCTTCACTAATGGCGGATTTGCAGAGATTTCTGCAAGATCGCTGCTTAGGCGTTTCGAATCTCCCACAGAAAGGCCGCTCTCTATTCACTGCCAGAGATTTTCGTCCAGGAGAAGTGATTCTAAGCCAAAAGCCATATATATGTGTTCCGAATAATACATCCTCGGAATCAAGATGTGACGGATGTTTCAAGACCAATAACCTTAAGAAATGTTCTGCTTGTCAAGTGGTTTGGTACTGTGGGAGCTCTTGCCAGAAGTCAGAGTGGAAGTTACATCGCGATGAATGCAAAGCTCTCACTAGACTTGAGAAGGAGAAACGGAAGTTTGTTACTCCTACAATACGTCTGATGGTTAGACTTTACATCAAGAGGAATTTGCAAAATGAAAAGGTCCTGCCAATTACGACGACAGACAATTATAGTTTGGTGGAGGCTTTGGTGTCCCACATGTCTGAGATTGATGAAAAGCAGATGTTGTTGTATGCACAGATGGCTAATCTTGTGAACTTGATTCTTCAATTTCCTAGTGTTGACCTAAGAGAGATCGCCGAGAACTTTTCAAAGTTCTCATGCAATGCTCATAGCATTTGTGATAGCGAATTGAGACCTCAAGGGATTGGATTGTTTCCATTGGTTTCCATCATTAATCACAGCTGCTCTCCCAATGCGGTTTTAGTGTTTGAGGAGCAGATGGCTGTTGTTCGGGCGATGGATAACATATCAAAGGATTCAGAGATAACTATCAGTTATATTGAAACCGCTGGAAGCACTCTGACTCGGCAGAAGTCTCTGAAAGAACAATACCTCTTCCACTGTCAGTGTGCCCGTTGCAGTAACTTTGGAAAACCTCATGATATTGAAGAAAGTGCAATATTGGAAGGCTATCGGTGTGCCAATGAGAAATGCACCGGTTTCTTACTCCGTGATCCTGAAGAAAAAGGCTTCGTTTGCCAGAAATGCTTGCTTCTTAGGAGCAAGGAAGAGGTTAAAAAGTTAGCAAGTGATCTCAAAACAGTTTCAGAGAAGGCTCCTACATCTCCTTCCGCAGAAGATAAACAAGCCGCTATTGAACTATATAAGACAATTGAGAAACTACAAGTTAAGCTTTACCATTCTTTCTCCATCCCTTTAATGAGAACCCGTGAAAAACTTCTCAAGATGCTAATGGACGTAGAAATCTGGAGAGAAGCTTTGAATTACTGCAGACTAATAGTCCCTGTTTACCAAAGAGTATATCCGGCAACCCATCCTTTGATTGGACTGCAGTTCTATACCCAAGGAAAACTCGAATGGTTGCTGGGGGAAACCAAAGAGGCGGTGAGTTCATTGATTAAGGCATTTGACATTCTGCGGATCAGCCATGGAATAAGCACACCTTTCATGAAAGAGCTCTCAGCAAAGTTGGAGGAAGCTCGTGCAGAAGCTTCTTATAAGCAGCTTGCATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

485

Amino Acids

55.36

Weight (kDa)

8.55

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 27 - 252 2.8e-12 SET domain
zf-MYND PF01753 61 - 98 1.8e-09 MYND finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1437
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 285
AciI CCGC 8 cut(s) 20, 82, 674, 765, 1050, 1068, 1322, 1357
AclWI GGATC 2 cut(s) 926, 1367
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 77, 1262
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 453
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 7 cut(s) 196, 524, 567, 761, 866, 1076, 1201
AhdI GACNNNNNGTC 1 cut(s) 1217
AjnI CCWGG 1 cut(s) 112
Alw21I GWGCWC 2 cut(s) 254, 1398
Alw26I GTCTC 2 cut(s) 604, 798
AlwI GGATC 2 cut(s) 926, 1367
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 48, 660, 1441
ApoI RAATTY 1 cut(s) 379
AseI ATTAAT 1 cut(s) 651
AsiGI ACCGGT 1 cut(s) 914
Asp700I GAANNNNTTC 2 cut(s) 123, 1155
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 1336
AsuII TTCGAA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 832
BanII GRGCYC 2 cut(s) 254, 1398
BauI CACGAG 1 cut(s) 1419
Bbv12I GWGCWC 2 cut(s) 254, 1398
BbvI GCAGC 3 cut(s) 35, 647, 1453
BccI CCATC 7 cut(s) 349, 490, 653, 691, 709, 1136, 1260
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 604, 798
BfaI CTAG 2 cut(s) 306, 531
BfmI CTRYAG 2 cut(s) 1207, 1268
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 5 cut(s) 49, 82, 661, 1068, 1442
BlsI GCNGC 5 cut(s) 50, 83, 662, 1069, 1443
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 397
BmeRI GACNNNNNGTC 1 cut(s) 1217
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 1035
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 1155
BpmI CTGGAG 1 cut(s) 1207
Bpu10I CCTNAGC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 332, 600, 1145
BsaBI GATNNNNATC 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 168, 1282, 1366
BsaWI WCCGGW 1 cut(s) 914
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 1262
Bse118I RCCGGY 1 cut(s) 914
Bse3DI GCAATG 2 cut(s) 586, 1448
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 168, 1282, 1366
BseGI GGATG 4 cut(s) 164, 194, 1128, 1252
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 2 cut(s) 77, 1262
BseMI GCAATG 2 cut(s) 586, 1448
BseMII CTCAG 2 cut(s) 450, 1413
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 832
BseXI GCAGC 3 cut(s) 35, 647, 1453
BseYI CCCAGC 1 cut(s) 1303
BsgI GTGCAG 1 cut(s) 1443
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 914
BsiHKAI GWGCWC 2 cut(s) 254, 1398
BsiSI CCGG 2 cut(s) 915, 1244
BslFI GGGAC 2 cut(s) 433, 1205
BslI CCNNNNNNNGG 2 cut(s) 77, 1262
BsmAI GTCTC 2 cut(s) 604, 798
BsmFI GGGAC 2 cut(s) 433, 1205
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 604
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 254, 832, 1398
Bsp143I GATC 5 cut(s) 43, 549, 931, 1009, 1359
Bsp19I CCATGG 1 cut(s) 1366
Bsp68I TCGCGA 1 cut(s) 285
BspACI CCGC 8 cut(s) 20, 82, 674, 765, 1050, 1068, 1322, 1357
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 451, 1412
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 2 cut(s) 856, 1386
BspLI GGNNCC 1 cut(s) 1035
BspMAI CTGCAG 2 cut(s) 1211, 1272
BspPI GGATC 2 cut(s) 926, 1367
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 586, 1448
BsrFI RCCGGY 1 cut(s) 914
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 3 cut(s) 168, 1282, 1366
BssMI GATC 5 cut(s) 43, 549, 931, 1009, 1359
BssSI CACGAG 1 cut(s) 1419
BssT1I CCWWGG 2 cut(s) 1282, 1366
Bst2BI CACGAG 1 cut(s) 1419
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 245, 821, 1021
Bst6I CTCTTC 2 cut(s) 818, 981
BstAFI CTTAAG 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 968, 1446
BstDEI CTNAG 6 cut(s) 52, 128, 459, 542, 974, 1399
BstDSI CCRYGG 1 cut(s) 1366
BstF5I GGATG 4 cut(s) 164, 194, 1128, 1252
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 5 cut(s) 46, 552, 934, 1012, 1362
BstMAI GTCTC 2 cut(s) 604, 798
BstMBI GATC 5 cut(s) 43, 549, 931, 1009, 1359
BstMWI GCNNNNNNNGC 6 cut(s) 54, 291, 497, 954, 963, 1450
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 1207, 1268
BstSLI GKGCMC 1 cut(s) 832
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 35, 647, 1453
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 1366
BtgZI GCGATG 3 cut(s) 266, 300, 728
BtsCI GGATG 4 cut(s) 164, 194, 1128, 1252
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 93, 817, 830
BtuMI TCGCGA 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 968, 1446
CciI TCATGA 2 cut(s) 856, 1386
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 241
CspAI ACCGGT 1 cut(s) 914
CviAII CATG 5 cut(s) 454, 576, 857, 1367, 1387
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 6 cut(s) 52, 128, 459, 542, 974, 1399
DpnI GATC 5 cut(s) 45, 551, 933, 1011, 1361
DpnII GATC 5 cut(s) 43, 549, 931, 1009, 1359
DriI GACNNNNNGTC 1 cut(s) 1217
Eam1104I CTCTTC 2 cut(s) 818, 981
Eam1105I GACNNNNNGTC 1 cut(s) 1217
EarI CTCTTC 2 cut(s) 818, 981
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 2 cut(s) 252, 1396
Eco130I CCWWGG 2 cut(s) 1282, 1366
Eco24I GRGCYC 2 cut(s) 254, 1398
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 2 cut(s) 252, 1396
Eco57I CTGAAG 1 cut(s) 957
EcoICRI GAGCTC 2 cut(s) 252, 1396
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 1282, 1366
EcoT38I GRGCYC 2 cut(s) 254, 1398
ErhI CCWWGG 2 cut(s) 1282, 1366
FaeI CATG 5 cut(s) 457, 579, 860, 1370, 1390
FalI AAGNNNNNCTT 4 cut(s) 1095, 1127, 1366, 1398
FaqI GGGAC 2 cut(s) 433, 1205
FatI CATG 5 cut(s) 453, 575, 856, 1366, 1386
Fnu4HI GCNGC 5 cut(s) 49, 82, 661, 1068, 1442
FokI GGATG 4 cut(s) 151, 201, 1115, 1239
FriOI GRGCYC 2 cut(s) 254, 1398
Fsp4HI GCNGC 5 cut(s) 49, 82, 661, 1068, 1442
FspBI CTAG 2 cut(s) 306, 531
GluI GCNGC 5 cut(s) 49, 82, 661, 1068, 1442
GsaI CCCAGC 1 cut(s) 1307
GsuI CTGGAG 1 cut(s) 1207
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 915, 1244
Hin1II CATG 5 cut(s) 457, 579, 860, 1370, 1390
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 4 cut(s) 6, 1109, 1194, 1428
HinfI GANTC 6 cut(s) 64, 124, 173, 517, 734, 781
HpaII CCGG 2 cut(s) 915, 1244
HphI GGTGA 1 cut(s) 1336
Hpy166II GTNNAC 3 cut(s) 511, 538, 1228
Hpy188I TCNGA 9 cut(s) 156, 172, 268, 354, 460, 739, 780, 798, 1027
Hpy188III TCNNGA 9 cut(s) 177, 196, 284, 373, 857, 935, 1162, 1186, 1387
Hpy8I GTNNAC 3 cut(s) 511, 538, 1228
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 4 cut(s) 310, 878, 1024, 1056
HpyCH4III ACNGT 3 cut(s) 245, 821, 1021
HpyCH4IV ACGT 2 cut(s) 349, 1176
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 291, 497, 954, 963, 1450
HpyF3I CTNAG 6 cut(s) 52, 128, 459, 542, 974, 1399
HpySE526I ACGT 2 cut(s) 349, 1176
Hsp92II CATG 5 cut(s) 457, 579, 860, 1370, 1390
Kzo9I GATC 5 cut(s) 43, 549, 931, 1009, 1359
LmnI GCTCC 4 cut(s) 249, 691, 978, 1039
Lsp1109I GCAGC 3 cut(s) 35, 647, 1453
LweI GCATC 1 cut(s) 1155
MaeI CTAG 2 cut(s) 306, 531
MaeII ACGT 2 cut(s) 349, 1176
MaeIII GTNAC 4 cut(s) 182, 276, 334, 839
MalI GATC 5 cut(s) 45, 551, 933, 1011, 1361
MbiI CCGCTC 1 cut(s) 84
MboI GATC 5 cut(s) 43, 549, 931, 1009, 1359
MboII GAAGA 6 cut(s) 512, 805, 878, 950, 998, 1067
MfeI CAATTG 1 cut(s) 1089
MhlI GDGCHC 3 cut(s) 254, 832, 1398
MluCI AATT 7 cut(s) 379, 405, 421, 524, 605, 1089, 1201
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 1 cut(s) 1389
MroXI GAANNNNTTC 2 cut(s) 123, 1155
MseI TTAA 6 cut(s) 210, 651, 993, 1107, 1136, 1338
MslI CAYNNNNRTG 2 cut(s) 145, 285
MspA1I CMGCKG 2 cut(s) 660, 767
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 2 cut(s) 915, 1244
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 6 cut(s) 54, 291, 497, 954, 963, 1450
NcoI CCATGG 1 cut(s) 1366
NdeII GATC 5 cut(s) 43, 549, 931, 1009, 1359
NlaIII CATG 5 cut(s) 457, 579, 860, 1370, 1390
NlaIV GGNNCC 1 cut(s) 1035
NmeAIII GCCGAG 2 cut(s) 580, 763
NmuCI GTSAC 1 cut(s) 182
NruI TCGCGA 1 cut(s) 285
NspI RCATGY 1 cut(s) 457
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 2 cut(s) 856, 1386
PciI ACATGT 1 cut(s) 453
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 2 cut(s) 123, 1155
PfeI GAWTC 5 cut(s) 64, 124, 173, 517, 734
PfoI TCCNGGA 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 914
PkrI GCNGC 5 cut(s) 50, 83, 662, 1069, 1443
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
PpuMI RGGWCCY 1 cut(s) 397
PscI ACATGT 1 cut(s) 453
PshBI ATTAAT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 1437
Psp124BI GAGCTC 2 cut(s) 254, 1398
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 1303
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 1035
PspPI GGNCC 1 cut(s) 397
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 2 cut(s) 1211, 1272
PvuII CAGCTG 1 cut(s) 660
RruI TCGCGA 1 cut(s) 285
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 145, 285
SacI GAGCTC 2 cut(s) 254, 1398
SaqAI TTAA 6 cut(s) 210, 651, 993, 1107, 1136, 1338
SatI GCNGC 5 cut(s) 49, 82, 661, 1068, 1442
Sau3AI GATC 5 cut(s) 43, 549, 931, 1009, 1359
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 3 cut(s) 254, 832, 1398
SfaNI GCATC 1 cut(s) 1155
SfcI CTRYAG 2 cut(s) 1207, 1268
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 145, 285
SmlI CTYRAG 4 cut(s) 209, 311, 615, 1160
SmoI CTYRAG 4 cut(s) 209, 311, 615, 1160
Sse9I AATT 7 cut(s) 379, 405, 421, 524, 605, 1089, 1201
SsiI CCGC 8 cut(s) 20, 82, 674, 765, 1050, 1068, 1322, 1357
SspI AATATT 1 cut(s) 879
SspMI CTAG 2 cut(s) 306, 531
SstI GAGCTC 2 cut(s) 254, 1398
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 1282, 1366
TaaI ACNGT 3 cut(s) 245, 821, 1021
TaiI ACGT 2 cut(s) 352, 1179
TaqI TCGA 2 cut(s) 62, 1293
TasI AATT 7 cut(s) 379, 405, 421, 524, 605, 1089, 1201
TauI GCSGC 2 cut(s) 84, 1070
TfiI GAWTC 5 cut(s) 64, 124, 173, 517, 734
Tru1I TTAA 6 cut(s) 210, 651, 993, 1107, 1136, 1338
Tru9I TTAA 6 cut(s) 210, 651, 993, 1107, 1136, 1338
TscAI CASTG 3 cut(s) 100, 824, 830
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 3 cut(s) 48, 660, 1441
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 303, 405, 483, 1320, 1375, 1403
TspGWI ACGGA 3 cut(s) 201, 340, 917
TspRI CASTG 3 cut(s) 100, 824, 830
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 397
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 1259
XmnI GAANNNNTTC 2 cut(s) 123, 1155
XspI CTAG 2 cut(s) 306, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.