RLG00000011834

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006602
Physical Location & Seq
Reverse (-)
13143560 .. 13147829
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011834

Sequence Viewer

Length: 1062 bp
ATGGAGGAATTGCAGAGCGCTCTCGGGAATCGCGGCCTGACCGTTTCGAATCTTCCGGAGAAAGGCCGTTGCATCTTCACCACCAAAGACTTCTATCCAGGGGAAGTGATCATAAGCCTAGAGCCCTATGTGTGCGTCCCCAAAAACTCCATTGCTGACCACAAGTGCGATGCTTGCTTCGAATCCAGTAACCTCAAGAAGTGCTCCGGTTGCAAGATTAAGTCGGAATGGAAACTGCACCGTCTCGAATGTGAAGCTTTCTCGAAGCTTCCCATTGAGTTCCGTCATCAAATTACACCTCCTATTCGTCTCACGATCAGACTCCACTGCCGTTCAAAATTACAATCTCAGAAGATGGTATTCAATGCACACACAATTTATGACAGTGGATTAAAGCACTTGGGTAAAGGACTGTATCCTGTCATTTCATTCATGAACCACAGCTGCTTGCCCAATTCTATTTTAGTATTTGAGGGGAGGTCAGCTGTTCTTCGTGCCGTGCAACATATACCCAAAGGAGCTGAGGTGTTGACAAGTTACATTGACCTTGTTGGAAGCACTGTGACTCGGCAAAAGGCGCTAAAGGAACAATACCTTTTTACCTGCACATGTCCCCACTGCATTAAAGTGTTCTGGAAGGCTACCGATGCACACATAATGAATGCGATGACCTTTTGCTTTGAAACTCTGATGATAATGGATTCATATGCCAACAATGCGGACATCTTAAGAGCAAAGAAGAGATACGAGAGGTGGAAAAATTCAATGAAGCTGGAAGACTGGAGTGAAGCTCTAGCATATTGCAGATTGACCATTGCAGTGTATCAAAGAGTATATCGAAACTTTCAATTCTTTCATCCTTCACTTGGATTGCAATACTATACCTGTGGGAAGCTTGAAGGGGTACTTGGAGAAGCTGAGAATGCTGTGAAATCTCTGACCAAGGCAGTCGATATACTGCAGATTACTTATGGGACAAGTACACCCTTCATGAAGGATCTTTTCTGTATGTTGGAGGAGCAACGTGAAATTGAAGCTCTCATCAATGGAACAGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

354

Amino Acids

40.38

Weight (kDa)

8.68

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 180 1.9e-12 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 611
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 33, 719
AclWI GGATC 1 cut(s) 1005
AcsI RAATTY 1 cut(s) 760
AfaI GTAC 2 cut(s) 906, 982
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 62, 866
AflII CTTAAG 1 cut(s) 727
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 7 cut(s) 336, 364, 683, 765, 848, 899, 1034
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 2 cut(s) 248, 314
AlwI GGATC 1 cut(s) 1005
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 2 cut(s) 34, 64
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 760
AspLEI GCGC 2 cut(s) 20, 580
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 2 cut(s) 47, 180
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 349
BceAI ACGGC 3 cut(s) 51, 315, 482
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 426
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 248, 314
BfaI CTAG 3 cut(s) 119, 794, 1060
BfmI CTRYAG 1 cut(s) 959
BfoI RGCGCY 2 cut(s) 21, 581
BfrI CTTAAG 1 cut(s) 727
BfuAI ACCTGC 1 cut(s) 611
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 2 cut(s) 34, 445
BlsI GCNGC 2 cut(s) 35, 446
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 3 cut(s) 81, 160, 637
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 2 cut(s) 775, 807
BpmI CTGGAG 1 cut(s) 802
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 2 cut(s) 47, 180
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 98, 942
BsaWI WCCGGW 2 cut(s) 55, 206
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 866
Bse1I ACTGG 2 cut(s) 186, 785
Bse3DI GCAATG 2 cut(s) 150, 813
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 98, 942
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 2 cut(s) 62, 866
BseMI GCAATG 2 cut(s) 150, 813
BseMII CTCAG 3 cut(s) 362, 513, 909
BseNI ACTGG 2 cut(s) 186, 785
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 221, 589
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 36, 66
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 56, 207
BslFI GGGAC 3 cut(s) 122, 597, 988
BslI CCNNNNNNNGG 2 cut(s) 62, 866
BsmAI GTCTC 2 cut(s) 248, 314
BsmBI CGTCTC 2 cut(s) 248, 314
BsmFI GGGAC 3 cut(s) 122, 597, 988
BsmI GAATGC 2 cut(s) 667, 928
BsnI GGCC 2 cut(s) 36, 66
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 2 cut(s) 47, 180
Bsp1286I GDGCHC 2 cut(s) 126, 206
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 3 cut(s) 108, 315, 997
BspACI CCGC 2 cut(s) 33, 719
BspANI GGCC 2 cut(s) 36, 66
BspCNI CTCAG 3 cut(s) 361, 514, 910
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 33
BspHI TCATGA 2 cut(s) 432, 990
BspMAI CTGCAG 1 cut(s) 963
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 1 cut(s) 1005
BspT104I TTCGAA 2 cut(s) 47, 180
BspTI CTTAAG 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 150, 813
BsrI ACTGG 2 cut(s) 186, 785
BssECI CCNNGG 2 cut(s) 98, 942
BssMI GATC 3 cut(s) 108, 315, 997
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 5 cut(s) 43, 242, 386, 414, 562
Bst6I CTCTTC 1 cut(s) 734
BstAFI CTTAAG 1 cut(s) 727
BstBI TTCGAA 2 cut(s) 47, 180
BstC8I GCNNGC 2 cut(s) 175, 449
BstDEI CTNAG 3 cut(s) 348, 522, 918
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 21, 581
BstHHI GCGC 2 cut(s) 20, 580
BstKTI GATC 3 cut(s) 111, 318, 1000
BstMAI GTCTC 2 cut(s) 248, 314
BstMBI GATC 3 cut(s) 108, 315, 997
BstMWI GCNNNNNNNGC 6 cut(s) 174, 210, 577, 647, 716, 923
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 959
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 36, 66
BtgZI GCGATG 2 cut(s) 183, 680
BtsCI GGATG 1 cut(s) 856
BtsI GCAGTG 3 cut(s) 325, 616, 825
BtsIMutI CAGTG 5 cut(s) 325, 391, 558, 616, 825
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 2 cut(s) 175, 449
CciI TCATGA 2 cut(s) 432, 990
CfoI GCGC 2 cut(s) 20, 580
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 905, 981
CviAII CATG 3 cut(s) 433, 609, 991
CviQI GTAC 2 cut(s) 905, 981
DdeI CTNAG 3 cut(s) 348, 522, 918
DpnI GATC 3 cut(s) 110, 317, 999
DpnII GATC 3 cut(s) 108, 315, 997
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 126
Eco47III AGCGCT 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 942
Esp3I CGTCTC 2 cut(s) 248, 314
FaeI CATG 3 cut(s) 436, 612, 994
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 3 cut(s) 122, 597, 988
FatI CATG 3 cut(s) 432, 608, 990
FauNDI CATATG 1 cut(s) 706
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 34, 445
FokI GGATG 1 cut(s) 843
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 34, 445
FspBI CTAG 3 cut(s) 119, 794, 1060
GlaI GCGC 2 cut(s) 19, 579
GluI GCNGC 2 cut(s) 34, 445
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 2 cut(s) 21, 581
HaeIII GGCC 2 cut(s) 36, 66
HapII CCGG 2 cut(s) 56, 207
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 20, 580
Hin1II CATG 3 cut(s) 436, 612, 994
Hin6I GCGC 2 cut(s) 18, 578
HinP1I GCGC 2 cut(s) 18, 578
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HindIII AAGCTT 3 cut(s) 255, 266, 893
HinfI GANTC 6 cut(s) 28, 49, 182, 321, 565, 701
HpaII CCGG 2 cut(s) 56, 207
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 531, 983
Hpy188I TCNGA 5 cut(s) 226, 320, 351, 690, 939
Hpy188III TCNNGA 9 cut(s) 25, 56, 196, 245, 262, 313, 433, 634, 991
Hpy8I GTNNAC 2 cut(s) 531, 983
HpyAV CCTTC 5 cut(s) 631, 870, 893, 988, 997
HpyCH4III ACNGT 5 cut(s) 43, 242, 386, 414, 562
HpyCH4IV ACGT 1 cut(s) 1024
HpyF10VI GCNNNNNNNGC 6 cut(s) 174, 210, 577, 647, 716, 923
HpyF3I CTNAG 3 cut(s) 348, 522, 918
HpySE526I ACGT 1 cut(s) 1024
Hsp92II CATG 3 cut(s) 436, 612, 994
HspAI GCGC 2 cut(s) 18, 578
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 108, 315, 997
LmnI GCTCC 3 cut(s) 209, 518, 1018
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 3 cut(s) 81, 160, 637
MaeI CTAG 3 cut(s) 119, 794, 1060
MaeII ACGT 1 cut(s) 1024
MaeIII GTNAC 3 cut(s) 188, 536, 562
MalI GATC 3 cut(s) 110, 317, 999
MboI GATC 3 cut(s) 108, 315, 997
MboII GAAGA 6 cut(s) 44, 67, 364, 482, 751, 788
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 2 cut(s) 126, 206
MluCI AATT 8 cut(s) 8, 291, 338, 375, 454, 760, 848, 1029
MlyI GAGTC 2 cut(s) 315, 559
MmeI TCCRAC 3 cut(s) 204, 532, 993
MnlI CCTC 7 cut(s) 203, 309, 466, 471, 517, 744, 1009
MroI TCCGGA 1 cut(s) 55
MseI TTAA 4 cut(s) 219, 392, 624, 728
MslI CAYNNNNRTG 2 cut(s) 626, 818
MspA1I CMGCKG 2 cut(s) 444, 485
MspCI CTTAAG 1 cut(s) 727
MspI CCGG 2 cut(s) 56, 207
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 2 cut(s) 667, 928
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 6 cut(s) 174, 210, 577, 647, 716, 923
NdeI CATATG 1 cut(s) 706
NdeII GATC 3 cut(s) 108, 315, 997
NlaIII CATG 3 cut(s) 436, 612, 994
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 562
NspI RCATGY 1 cut(s) 612
NspV TTCGAA 2 cut(s) 47, 180
PagI TCATGA 2 cut(s) 432, 990
PciI ACATGT 1 cut(s) 608
PctI GAATGC 2 cut(s) 667, 928
PfeI GAWTC 4 cut(s) 28, 49, 182, 701
PkrI GCNGC 2 cut(s) 35, 446
PleI GAGTC 2 cut(s) 315, 559
PpsI GAGTC 2 cut(s) 315, 559
PscI ACATGT 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 1 cut(s) 997
PvuII CAGCTG 2 cut(s) 444, 485
RsaI GTAC 2 cut(s) 906, 982
RsaNI GTAC 2 cut(s) 905, 981
RseI CAYNNNNRTG 2 cut(s) 626, 818
SaqAI TTAA 4 cut(s) 219, 392, 624, 728
SatI GCNGC 2 cut(s) 34, 445
Sau3AI GATC 3 cut(s) 108, 315, 997
SchI GAGTC 2 cut(s) 315, 559
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 2 cut(s) 126, 206
SfaNI GCATC 3 cut(s) 81, 160, 637
SfcI CTRYAG 1 cut(s) 959
SfuI TTCGAA 2 cut(s) 47, 180
SmiMI CAYNNNNRTG 2 cut(s) 626, 818
SmlI CTYRAG 2 cut(s) 194, 727
SmoI CTYRAG 2 cut(s) 194, 727
Sse9I AATT 8 cut(s) 8, 291, 338, 375, 454, 760, 848, 1029
SsiI CCGC 2 cut(s) 33, 719
SspMI CTAG 3 cut(s) 119, 794, 1060
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 5 cut(s) 43, 242, 386, 414, 562
TaiI ACGT 1 cut(s) 1027
TaqI TCGA 6 cut(s) 47, 180, 246, 263, 838, 951
TasI AATT 8 cut(s) 8, 291, 338, 375, 454, 760, 848, 1029
TatI WGTACW 1 cut(s) 980
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 28, 49, 182, 701
Tru1I TTAA 4 cut(s) 219, 392, 624, 728
Tru9I TTAA 4 cut(s) 219, 392, 624, 728
TscAI CASTG 5 cut(s) 332, 391, 565, 623, 825
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 9 cut(s) 417, 421, 449, 674, 693, 782, 845, 979, 1007
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 5 cut(s) 332, 391, 565, 623, 825
Vha464I CTTAAG 1 cut(s) 727
XapI RAATTY 1 cut(s) 760
XceI RCATGY 1 cut(s) 612
XspI CTAG 3 cut(s) 119, 794, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.