Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011975

Physical Location & Seq

Genomic Coordinates Reverse (-)

33664722 .. 33666113

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATCGATCCGATGCATGCTGACTTGGATGAAGATATCAACGGCCTCCACAACCAAGTGAGAAGATTGAAAAATGTAGCTCAAGTTATAGGTACGGAAGCAAAATTCCAGAATGAATTTCTGGATCAGCTGCATATGACGCTGTTGAAAGGTCAAGCAGGGTTGAAGAACAATGTCAGGAGATTGAACAGAAGCATCATCCGGAGTGGATCAAACCATGTCATCCACGTGGTGGCTTTTGGACTACTTTGTTTCTTCGTGGTATACTTTTGGTCCAAACTGTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

9.74

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29060 AT1G29060 AT4G14600
fragaria_vesca	FvH4_5g35960
malus_domestica	MD08G1191600.v1.1 MD15G1380400.v1.1
prunus_persica	Prupe.1G526600_v2.0.a1
pyrus_communis	pycom08g16510 pycom15g34070
rosa_chinensis	RchiOBHm_Chr7g0237701
rosa_multiflora	Rmu_ssc0000067.1_g000046
rosa_roxburghii	Rroxscaffold_3G00223860
rosa_rugosa	Rorug07G0306500
rosa_samantha	Rh2AG620100 Rh7AG463200 Rh7BG433400 Rh7CG480100 Rh7DG449100
rosa_wichuraiana	Rw7G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	201
AclWI	GGATC	3 cut(s)	2, 132, 217
AcsI	RAATTY	2 cut(s)	104, 116
AcvI	CACGTG	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	70, 148, 166, 187
AluBI	AGCT	2 cut(s)	80, 130
AluI	AGCT	2 cut(s)	80, 130
AlwI	GGATC	3 cut(s)	2, 132, 217
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	104, 116
AspS9I	GGNCC	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmsI	GCATC	2 cut(s)	3, 204
BpuEI	CTTGAG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
BseAI	TCCGGA	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	6
BseGI	GGATG	3 cut(s)	34, 198, 222
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	3, 7, 124, 209
BspANI	GGCC	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	201
BspPI	GGATC	3 cut(s)	2, 132, 217
BssMI	GATC	4 cut(s)	3, 7, 124, 209
BssNAI	GTATAC	1 cut(s)	265
Bst1107I	GTATAC	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	34, 198, 222
BstKTI	GATC	4 cut(s)	6, 10, 127, 212
BstMBI	GATC	4 cut(s)	3, 7, 124, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	117
BstZ17I	GTATAC	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	34, 198, 222
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	6
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	2 cut(s)	17, 218
CviJI	RGCY	4 cut(s)	45, 80, 130, 236
CviKI_1	RGCY	4 cut(s)	45, 80, 130, 236
CviQI	GTAC	1 cut(s)	93
DpnI	GATC	4 cut(s)	5, 9, 126, 211
DpnII	GATC	4 cut(s)	3, 7, 124, 209
DraIII	CACNNNGTG	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	273
Eco72I	CACGTG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	18
FaeI	CATG	2 cut(s)	20, 221
FaiI	YATR	6 cut(s)	18, 89, 135, 137, 219, 265
FatI	CATG	2 cut(s)	16, 217
FauNDI	CATATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	3 cut(s)	41, 185, 209
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	20, 221
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	12, 287
Hpy188III	TCNNGA	4 cut(s)	109, 122, 178, 202
Hpy8I	GTNNAC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	16, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	20, 221
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	3, 7, 124, 209
LpnPI	CCDG	5 cut(s)	107, 122, 144, 163, 215
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	2 cut(s)	3, 204
MaeII	ACGT	1 cut(s)	228
MalI	GATC	4 cut(s)	5, 9, 126, 211
MboI	GATC	4 cut(s)	3, 7, 124, 209
MboII	GAAGA	4 cut(s)	44, 75, 178, 247
MluCI	AATT	2 cut(s)	104, 116
MnlI	CCTC	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	18
MroI	TCCGGA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	4 cut(s)	3, 7, 124, 209
NlaIII	CATG	2 cut(s)	20, 221
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	132
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	4 cut(s)	3, 7, 124, 209
Sau96I	GGNCC	1 cut(s)	273
SetI	ASST	5 cut(s)	82, 94, 132, 154, 231
SfaNI	GCATC	2 cut(s)	3, 204
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	2 cut(s)	104, 116
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	104, 116
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	45, 129
TspGWI	ACGGA	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	2 cut(s)	104, 116
XceI	RCATGY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.