pycom15g34830

calcium-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
34620948 .. 34621166
219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGCAGCAAGGTGACGCCAGTGGCGAAAATGAAGGCGGTGACATTCGTGAGGATGTCGGTGTTGATGGTCAGGAAGATGAAGATGAGAAGGACCTTGCGAAGGCATTCGGTGTGTTTGATTTGAACGGCGATGGCTTCATTTCTAGCGAGGAGTTTGAGAGCGTGCTGAGGAGATTAGGGTTTTGGAGGAGAATAGCAGCCGTGACTGTAGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

7.92

Weight (kDa)

4.05

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 32 - 59 8.4e-08 EF hand domain
EF-hand_6 PF13405 32 - 60 1.8e-07 EF-hand domain
EF-hand_5 PF13202 33 - 55 2.6e-08 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 4, 197
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 23, 50
AvaII GGWCC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 16, 209
BccI CCATC 2 cut(s) 59, 125
BceAI ACGGC 2 cut(s) 142, 185
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 5, 198
BlsI GCNGC 2 cut(s) 6, 199
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 3 cut(s) 164, 184, 202
BseXI GCAGC 2 cut(s) 16, 209
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 104
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 16, 209
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 1 cut(s) 23
CviJI RGCY 2 cut(s) 135, 200
CviKI_1 RGCY 2 cut(s) 135, 200
DdeI CTNAG 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 91
FaiI YATR 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 5, 198
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 5, 198
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 5, 198
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
HphI GGTGA 2 cut(s) 23, 50
Hpy188III TCNNGA 2 cut(s) 47, 71
HpyAV CCTTC 3 cut(s) 26, 82, 94
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 31, 56
Lsp1109I GCAGC 2 cut(s) 16, 209
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 11, 38, 202
MboII GAAGA 2 cut(s) 86, 92
MnlI CCTC 4 cut(s) 43, 142, 162, 180
MroXI GAANNNNTTC 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 104
NmuCI GTSAC 3 cut(s) 11, 38, 202
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 6, 199
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
SatI GCNGC 2 cut(s) 5, 198
Sau96I GGNCC 1 cut(s) 91
SetI ASST 2 cut(s) 13, 96
SfcI CTRYAG 1 cut(s) 207
SgeI CNNG 9 cut(s) 20, 30, 59, 83, 107, 156, 160, 175, 214
SinI GGWCC 1 cut(s) 91
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 208
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 3 cut(s) 11, 38, 202
TseI GCWGC 2 cut(s) 4, 197
Tsp45I GTSAC 3 cut(s) 11, 38, 202
TspDTI ATGAA 3 cut(s) 45, 93, 127
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.