Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006780

Physical Location & Seq

Genomic Coordinates Reverse (-)

11436688 .. 11437169

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCTCCCCTGAGCAGCAATGATCTAGAGCGAATTTTCAAGAAGCTTGACAAGAACGGAGATGGCCAAGTGAGTCTCGAGCCTGCAGGAGCTCGAGTCGCTGGTGGCAAACCGAGCCTCGACTGGAATGAGTTCTTGTTCTTCTACAAGTCCATATCTACGCCGGATAGTAATGACGGCGACAATGGCCATGGAGATGGTAGTGCCAATGATCATGACGATGAGAGTGATCTTGTGAAGGCGTTCAATGTGTTCGACATAAACGGCGAGGGCTTTATTTCTTGTGAGGAGCTTGATAGCGTTCTGAGGAGATTAGGAGTAATGGAAGAGAATAGTAGCCGGGACTGCAGATCCATGATTCACGTGTACGACACCAATTTGGACGGGCTACTTGATTTCCAGGAATTCAAACACATGATGTTGCATAATACCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

4.46

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	75 - 140	2e-12	EF-hand domain pair
EF-hand_6	PF13405	78 - 106	7.2e-06	EF-hand domain
EF-hand_1	PF00036	115 - 140	4.5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21550
fragaria_vesca	FvH4_2g28010
malus_domestica	MD08G1159800.v1.1 MD15G1133000.v1.1
prunus_persica	Prupe.1G488600_v2.0.a1
pyrus_communis	pycom15g11990 pycom15g34830
rosa_chinensis	RchiOBHm_Chr6g0296831 RchiOBHm_Chr6g0296871
rosa_laevigata	RLG00000011650 RLG00000011654
rosa_multiflora	Rmu_co8371669.1_g000001 Rmu_co8423521.1_g000001 Rmu_sc0009497.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171120
rosa_rugosa	Rorug06G0266800 Rorug06G0267100
rosa_samantha	Rh6AG377700 Rh6AG377900 Rh6BG385900 Rh6CG391000 Rh6CG391300 Rh6DG378200 Rh6DG378600
rosa_wichuraiana	Rw6G033010 Rw6G033030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	2 cut(s)	64, 187
AcsI	RAATTY	2 cut(s)	33, 404
AcvI	CACGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	40, 247, 409
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	46, 92, 292
AluI	AGCT	3 cut(s)	46, 92, 292
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	9, 80
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	2 cut(s)	77, 93
AoxI	GGCC	2 cut(s)	64, 187
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	33, 404
Asp700I	GAANNNNTTC	2 cut(s)	131, 242
AsuC2I	CCSGG	1 cut(s)	341
AvaI	CYCGRG	2 cut(s)	77, 93
BalI	TGGCCA	2 cut(s)	66, 189
BanII	GRGCYC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	56, 191
BceAI	ACGGC	2 cut(s)	193, 280
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	9, 80
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	84, 346
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	341, 401
BmeT110I	CYCGRG	2 cut(s)	77, 93
BmrFI	CCNGG	2 cut(s)	341, 401
Bpu10I	CCTNAGC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	302, 322
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	2 cut(s)	66, 189
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	2 cut(s)	77, 93
BsiSI	CCGG	2 cut(s)	164, 340
BslFI	GGGAC	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	9, 80
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	66, 189
BsoBI	CYCGRG	2 cut(s)	77, 93
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	4 cut(s)	22, 211, 229, 350
Bsp19I	CCATGG	1 cut(s)	190
BspANI	GGCC	2 cut(s)	66, 189
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	214
BspMAI	CTGCAG	2 cut(s)	88, 350
BspPI	GGATC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	4 cut(s)	22, 211, 229, 350
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	11, 305, 438
BstDSI	CCRYGG	1 cut(s)	190
BstKTI	GATC	4 cut(s)	25, 214, 232, 353
BstMAI	GTCTC	2 cut(s)	9, 80
BstMBI	GATC	4 cut(s)	22, 211, 229, 350
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 114, 186, 345
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	339, 399
BstSFI	CTRYAG	2 cut(s)	84, 346
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	66, 189
BtgI	CCRYGG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	4 cut(s)	191, 215, 355, 415
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	11, 305, 438
DpnI	GATC	4 cut(s)	24, 213, 231, 352
DpnII	GATC	4 cut(s)	22, 211, 229, 350
EaeI	YGGCCR	2 cut(s)	64, 187
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	364
Eco88I	CYCGRG	2 cut(s)	77, 93
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	194, 218, 358, 418
FaiI	YATR	7 cut(s)	155, 192, 216, 260, 356, 416, 426
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	4 cut(s)	190, 214, 354, 414
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	66, 189
HapII	CCGG	2 cut(s)	164, 340
Hin1II	CATG	4 cut(s)	194, 218, 358, 418
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	73, 96, 358
HpaII	CCGG	2 cut(s)	164, 340
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	4 cut(s)	26, 40, 77, 215
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	86, 348, 424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 114, 186, 345
HpyF3I	CTNAG	3 cut(s)	11, 305, 438
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	194, 218, 358, 418
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	22, 211, 229, 350
LmnI	GCTCC	2 cut(s)	89, 289
LpnPI	CCDG	9 cut(s)	23, 72, 87, 96, 109, 177, 353, 386, 413
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	363
MalI	GATC	4 cut(s)	24, 213, 231, 352
MboI	GATC	4 cut(s)	22, 211, 229, 350
MboII	GAAGA	2 cut(s)	133, 338
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	2 cut(s)	66, 189
MluCI	AATT	3 cut(s)	33, 376, 404
MluNI	TGGCCA	2 cut(s)	66, 189
MlyI	GAGTC	2 cut(s)	82, 105
MnlI	CCTC	4 cut(s)	128, 262, 280, 300
Mox20I	TGGCCA	2 cut(s)	66, 189
MroXI	GAANNNNTTC	2 cut(s)	131, 242
MscI	TGGCCA	2 cut(s)	66, 189
MslI	CAYNNNNRTG	2 cut(s)	195, 219
Msp20I	TGGCCA	2 cut(s)	66, 189
MspI	CCGG	2 cut(s)	164, 340
MspR9I	CCNGG	2 cut(s)	341, 401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	98, 114, 186, 345
NciI	CCSGG	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	22, 211, 229, 350
NlaIII	CATG	4 cut(s)	194, 218, 358, 418
PaeR7I	CTCGAG	2 cut(s)	77, 93
PagI	TCATGA	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	131, 242
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	2 cut(s)	81, 104
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
PpsI	GAGTC	2 cut(s)	81, 104
Ppu21I	YACGTR	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	399
PspCI	CACGTG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	93
PstI	CTGCAG	2 cut(s)	88, 350
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	195, 219
SacI	GAGCTC	1 cut(s)	94
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	4 cut(s)	22, 211, 229, 350
SbfI	CCTGCAGG	1 cut(s)	88
SchI	GAGTC	2 cut(s)	82, 105
ScrFI	CCNGG	2 cut(s)	341, 401
SdaI	CCTGCAGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	48, 94, 294, 366
SfcI	CTRYAG	2 cut(s)	84, 346
Sfr274I	CTCGAG	2 cut(s)	77, 93
SlaI	CTCGAG	2 cut(s)	77, 93
SmiMI	CAYNNNNRTG	2 cut(s)	195, 219
SmlI	CTYRAG	2 cut(s)	77, 93
SmoI	CTYRAG	2 cut(s)	77, 93
Sse8387I	CCTGCAGG	1 cut(s)	88
Sse9I	AATT	3 cut(s)	33, 376, 404
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	339, 399
StyI	CCWWGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	4 cut(s)	78, 94, 120, 255
TasI	AATT	3 cut(s)	33, 376, 404
TfiI	GAWTC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	72
XapI	RAATTY	2 cut(s)	33, 404
XbaI	TCTAGA	1 cut(s)	25
XhoI	CTCGAG	2 cut(s)	77, 93
XmnI	GAANNNNTTC	2 cut(s)	131, 242
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.