Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8423521.1

Orthogroup ID

OG0006780

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 460

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8423521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtctcccctgagcagcaatgatttagagcgaattttcgagaagcttgacaagaacggagatggccaagtgagtgtcgaggagctcaactggctcctcgagagaattggggtcgagttcagcttgcaggagatcgagtccctggtgggcaaaccgagcctcgactggaatgacttcttgttcttctacaagtccatatctacgccggatagtaatgacggcgacaatggccatggagatggtagcgccaatgatcatgacgatgagagtgatcttgtgaaggcgttcgatgtgttcgacataaacggcgacggcttcatttcttgtgaggagcttgagagcgttctgaggagattaggagtaatggaagagaatagtagccgtgactgcagatccatgattcacgtgtacgacaccaatttggacgggctacttgatttccaggaattcaaacacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

4.15

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21550
fragaria_vesca	FvH4_2g28010
malus_domestica	MD08G1159800.v1.1 MD15G1133000.v1.1
prunus_persica	Prupe.1G488600_v2.0.a1
pyrus_communis	pycom15g11990 pycom15g34830
rosa_chinensis	RchiOBHm_Chr6g0296831 RchiOBHm_Chr6g0296871
rosa_laevigata	RLG00000011650 RLG00000011654
rosa_multiflora	Rmu_co8371669.1_g000001 Rmu_co8423521.1_g000001 Rmu_sc0009497.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171120
rosa_rugosa	Rorug06G0266800 Rorug06G0267100
rosa_samantha	Rh6AG377700 Rh6AG377900 Rh6BG385900 Rh6CG391000 Rh6CG391300 Rh6DG378200 Rh6DG378600
rosa_wichuraiana	Rw6G033010 Rw6G033030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	2 cut(s)	64, 229
AcsI	RAATTY	2 cut(s)	33, 446
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	141, 441
AluBI	AGCT	4 cut(s)	46, 85, 123, 334
AluI	AGCT	4 cut(s)	46, 85, 123, 334
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	64, 229
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	33, 446
Asp700I	GAANNNNTTC	2 cut(s)	173, 284
AspLEI	GCGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	98
BalI	TGGCCA	2 cut(s)	66, 231
BanII	GRGCYC	1 cut(s)	87
BbrPI	CACGTG	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	56, 233
BceAI	ACGGC	4 cut(s)	235, 322, 328, 366
BciT130I	CCWGG	2 cut(s)	143, 443
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	388
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	143, 443
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	143, 443
Bpu10I	CCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	141, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	2 cut(s)	95, 170
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	143, 443
BseDI	CCNNGG	2 cut(s)	141, 232
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	95, 170
BseRI	GAGGAG	4 cut(s)	86, 95, 344, 364
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	2 cut(s)	66, 231
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	66, 231
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	132, 253, 271, 392
Bsp19I	CCATGG	1 cut(s)	232
BspANI	GGCC	2 cut(s)	66, 231
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	392
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	95, 170
BssECI	CCNNGG	2 cut(s)	141, 232
BssMI	GATC	4 cut(s)	132, 253, 271, 392
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	2 cut(s)	143, 443
Bst6I	CTCTTC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	11, 347
BstDSI	CCRYGG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	135, 256, 274, 395
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	132, 253, 271, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 156, 228, 387
BstNI	CCWGG	2 cut(s)	143, 443
BstSCI	CCNGG	2 cut(s)	141, 441
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	66, 231
BtgI	CCRYGG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	4 cut(s)	233, 257, 397, 457
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	11, 347
DpnI	GATC	4 cut(s)	134, 255, 273, 394
DpnII	GATC	4 cut(s)	132, 253, 271, 392
EaeI	YGGCCR	2 cut(s)	64, 229
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	141, 441
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	236, 260, 400
FaiI	YATR	6 cut(s)	197, 234, 258, 302, 398, 458
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	232, 256, 396
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	16
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	66, 231
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	236, 260, 400
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	137, 400
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	3 cut(s)	40, 100, 257
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	127, 390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 156, 228, 387
HpyF3I	CTNAG	2 cut(s)	11, 347
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	236, 260, 400
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	132, 253, 271, 392
LmnI	GCTCC	3 cut(s)	82, 99, 331
LpnPI	CCDG	9 cut(s)	23, 76, 113, 128, 151, 155, 219, 428, 455
Lsp1109I	GCAGC	1 cut(s)	27
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	4 cut(s)	134, 255, 273, 394
MboI	GATC	4 cut(s)	132, 253, 271, 392
MboII	GAAGA	2 cut(s)	175, 380
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	2 cut(s)	66, 231
MluCI	AATT	4 cut(s)	33, 105, 418, 446
MluNI	TGGCCA	2 cut(s)	66, 231
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	73, 107, 170, 322, 342
Mox20I	TGGCCA	2 cut(s)	66, 231
MroXI	GAANNNNTTC	2 cut(s)	173, 284
MscI	TGGCCA	2 cut(s)	66, 231
MslI	CAYNNNNRTG	2 cut(s)	237, 261
Msp20I	TGGCCA	2 cut(s)	66, 231
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	143, 443
MvaI	CCWGG	2 cut(s)	143, 443
MwoI	GCNNNNNNNGC	4 cut(s)	91, 156, 228, 387
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	132, 253, 271, 392
NlaIII	CATG	3 cut(s)	236, 260, 400
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	2 cut(s)	173, 284
PfeI	GAWTC	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	145
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	141, 441
PspCI	CACGTG	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	141, 441
PspN4I	GGNNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	237, 261
SacI	GAGCTC	1 cut(s)	87
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	4 cut(s)	132, 253, 271, 392
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	143, 443
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	5 cut(s)	48, 87, 125, 336, 408
SfcI	CTRYAG	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	237, 261
SmlI	CTYRAG	2 cut(s)	98, 335
SmoI	CTYRAG	2 cut(s)	98, 335
Sse9I	AATT	4 cut(s)	33, 105, 418, 446
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	141, 441
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	8 cut(s)	39, 78, 99, 114, 135, 162, 288, 297
TasI	AATT	4 cut(s)	33, 105, 418, 446
TfiI	GAWTC	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	72
XapI	RAATTY	2 cut(s)	33, 446
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	173, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.