pycom15g34910

XIAP-associated factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012125
Physical Location & Seq
Reverse (-)
34735846 .. 34740891
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGGCTGTTGCATCTGGAGAAGCAACCACAATATGCAATCACTGTGACAGAGCTATCCCCTCATCAAATATTGACTTGCACTCTGTTCATTGCTTCCGCAATCTAGAAAAATGTAAAGTCTGTGGTGATATGGTTCCAAAAAAATATGCTGAGGAACATTACTCGAACACTCATGCTCCGGTAGCCTGTTCACTTTGTAGTGAGACAATGGAACGTGAAATATTAGCTACCCACAAAGGTGAAAACTGCCCTCAGAGAATTGTCACATGTGACTTCTGTGAGTTCCCATTGCCTGCAATTGATCTTGCTGAGCATCAGGAAGTATGCGGGAATCGAACAGAACTTTGTCATCTTTGTAACAGATACATCAGACTGCGAGAACGCTATAATCATGAAAGTAGGTGTAATGGTATCTCAGATAATACCGCCGGTCCTTCCAGGGATGATAGGGCAGCTGAAAGAAGGCAGGGTCCTCCAAGAAGACAGGCGAACGAGTTTTCACGGAAGCGGCTTATGTTCACCATTGCACTAACAGGTATTGCTGTTTTATTAGGGTCTCTTTTTTTCCAGAGAAAGCCAGACGAGAGTCAAGTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.53

Weight (kDa)

7.1

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 97, 327, 426, 508
AflIII ACRYGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 3 cut(s) 53, 227, 455
AluI AGCT 3 cut(s) 53, 227, 455
Alw26I GTCTC 2 cut(s) 197, 561
ApeKI GCWGC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 431, 470
AsuHPI GGTGA 3 cut(s) 137, 251, 511
AvaII GGWCC 2 cut(s) 431, 470
BbsI GAAGAC 1 cut(s) 487
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 197, 561
BfaI CTAG 1 cut(s) 104
BisI GCNGC 2 cut(s) 453, 509
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 454, 510
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 431, 470
BmgT120I GGNCC 2 cut(s) 431, 470
BmiI GGNNCC 2 cut(s) 135, 471
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 20, 322
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse118I RCCGGY 1 cut(s) 428
Bse3DI GCAATG 3 cut(s) 88, 287, 522
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 1 cut(s) 448
BseMI GCAATG 3 cut(s) 88, 287, 522
BseMII CTCAG 4 cut(s) 141, 266, 300, 429
BseXI GCAGC 1 cut(s) 464
BsiSI CCGG 2 cut(s) 179, 429
BsmAI GTCTC 2 cut(s) 197, 561
Bso31I GGTCTC 1 cut(s) 561
Bsp143I GATC 1 cut(s) 301
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 4 cut(s) 97, 327, 426, 508
BspCNI CTCAG 4 cut(s) 142, 265, 301, 428
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 135, 471
BspTNI GGTCTC 1 cut(s) 561
BsrDI GCAATG 3 cut(s) 88, 287, 522
BsrFI RCCGGY 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 4 cut(s) 150, 252, 309, 415
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 197, 561
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 487
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 294
CciI TCATGA 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 431, 470
CviAII CATG 3 cut(s) 173, 267, 392
CviJI RGCY 7 cut(s) 5, 53, 185, 227, 455, 511, 577
CviKI_1 RGCY 7 cut(s) 5, 53, 185, 227, 455, 511, 577
DdeI CTNAG 4 cut(s) 150, 252, 309, 415
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 431, 470
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 176, 270, 395
FaiI YATR 9 cut(s) 34, 131, 147, 174, 268, 325, 387, 393, 515
FatI CATG 3 cut(s) 172, 266, 391
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 453, 509
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 2 cut(s) 453, 509
FspBI CTAG 1 cut(s) 104
GluI GCNGC 2 cut(s) 453, 509
GsuI CTGGAG 1 cut(s) 36
HapII CCGG 2 cut(s) 179, 429
Hin1II CATG 3 cut(s) 176, 270, 395
HinfI GANTC 2 cut(s) 331, 586
HpaII CCGG 2 cut(s) 179, 429
HphI GGTGA 3 cut(s) 137, 251, 511
Hpy166II GTNNAC 2 cut(s) 191, 519
Hpy188I TCNGA 3 cut(s) 255, 371, 418
Hpy188III TCNNGA 5 cut(s) 15, 104, 317, 392, 568
Hpy8I GTNNAC 2 cut(s) 191, 519
HpyAV CCTTC 2 cut(s) 444, 456
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 11, 36, 79, 296, 527, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 150, 252, 309, 415
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 176, 270, 395
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 20, 322
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 4 cut(s) 44, 262, 269, 356
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 492
MfeI CAATTG 1 cut(s) 297
MluCI AATT 2 cut(s) 258, 297
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 4 cut(s) 70, 145, 261, 483
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 179, 429
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 176, 270, 395
NlaIV GGNNCC 2 cut(s) 135, 471
NmuCI GTSAC 3 cut(s) 44, 262, 269
NspI RCATGY 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 237
PagI TCATGA 1 cut(s) 391
PciI ACATGT 1 cut(s) 266
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 454, 510
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 470
PscI ACATGT 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 135, 471
PspPI GGNCC 2 cut(s) 431, 470
PspPPI RGGWCCY 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 2 cut(s) 453, 509
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 431, 470
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 1 cut(s) 439
SetI ASST 7 cut(s) 55, 217, 229, 241, 404, 457, 538
SfaNI GCATC 2 cut(s) 20, 322
SinI GGWCC 2 cut(s) 431, 470
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 2 cut(s) 258, 297
SsiI CCGC 4 cut(s) 97, 327, 426, 508
SspI AATATT 2 cut(s) 70, 222
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 164, 334
TasI AATT 2 cut(s) 258, 297
TauI GCSGC 1 cut(s) 511
TfiI GAWTC 1 cut(s) 331
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 3 cut(s) 44, 262, 269
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 3 cut(s) 44, 262, 269
TspDTI ATGAA 2 cut(s) 77, 408
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 431, 470
XbaI TCTAGA 1 cut(s) 103
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.