Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0017374

Physical Location & Seq

Genomic Coordinates Forward (+)

34950045 .. 34951375

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAACTCGAGTATAAGAATAGCCATATGATTGAAAAACACACGCATTTGAAGTTCACAAGGTGGTGGACTCCTTTAGGAGAAAGACTTGTATGCAACATTTTACTCTCTTCCATTAGGGGCCCCAATTGTAGATCCCTTCAAAGACAGGAACTTGGCAAAGTCTGGGAGTACTCCAAACGAAATGACTTGACTTGCATTCTAATATTAAAGCAACTGAAAAATGGGAAACTTCATACTGCAACCATAATTTTTGAACCCACGTTGACCAGATCTTATTCAATGCCCTTTATGGTTTGCTTTGTTCTTGCCATGACACTTCTTGTTGCTCAAGCACAACAAATGCCATCGAATATCAGCCTCGGATCTTCTTTAACGCCGACTACCAACTCTTTGTGGTTATTGGTCTCTCACTGCTTTCGGATATATTTTGTCGGCGATTTCTGTAGATGTGTTTTTTTAGTGATCAGAAAACTAATTGTGGATGCAAATTTCTTTCTCCTTACTCTTGGACAAAATTGCACTTGCAAAACAAATAACACCTTAGGTCAAGGCCAAGACCCTCATGCGCCCACGATGAATTGGGGGGGGGGGGGTTGCTTTGGCAGAAGAACCTCCGATGCCAAAGTTAGAATTTTGAGGGAAAAGTGTTTGGAAAATTTAGAGAATTTAGGGTGTGGCAAGCCCTTTTGGGTGGAGTTGGCCAGCCACTTGGATCACTTTGTGGGCGAAGTTCATGATTTGTGGTTACTTAATAATAAAAAAGGAATGATTTGGGGGTTACCTTGTGGAAAAGATTTGATGACGATGGACGAAATTGGGATGATTGCCCGCTGCTCGCGCGTAGAAATCCTAGTGTGCCTCGAGGGTAATTTTGTCCTTTTTACCCAAAAATTCACGTGTCGCCTCTTGATTATTTTTGGCTCCACAAATGCCCCCACACTTATTGGGTTGCTCGCAGGAAATGGCAGCAGGTGTAGAGATCTTCTTGCTTTAAAAGACGTAGGATTGTTTCCTATATTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

343

Amino Acids

38.68

Weight (kDa)

9.1

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017374)

Species	Orthologous Gene IDs
malus_domestica	MD10G1118700.v1.1 MD12G1200800.v1.1
pyrus_communis	pycom01g03700 pycom03g19090 pycom05g08120 pycom05g08150 pycom06g09060 pycom06g09070 pycom12g04950 pycom13g18790 pycom13g23440 pycom13g23740 pycom15g35050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	963
AbsI	CCTCGAGG	1 cut(s)	863
Acc36I	ACCTGC	1 cut(s)	963
AccII	CGCG	2 cut(s)	841, 843
AciI	CCGC	1 cut(s)	832
AclWI	GGATC	3 cut(s)	129, 373, 723
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	5 cut(s)	490, 633, 658, 667, 893
AcvI	CACGTG	1 cut(s)	900
AdeI	CACNNNGTG	2 cut(s)	63, 724
AfaI	GTAC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	899
AgsI	TTSAA	5 cut(s)	35, 52, 143, 257, 282
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	3 cut(s)	129, 373, 723
Ama87I	CYCGRG	2 cut(s)	8, 863
AoxI	GGCC	3 cut(s)	121, 553, 702
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	834, 969
ApoI	RAATTY	5 cut(s)	490, 633, 658, 667, 893
AspLEI	GCGC	2 cut(s)	571, 843
AspS9I	GGNCC	2 cut(s)	121, 122
AvaI	CYCGRG	2 cut(s)	8, 863
AxyI	CCTNAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	821, 981
BccI	CCATC	2 cut(s)	355, 802
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	963
BglII	AGATCT	2 cut(s)	272, 982
BisI	GCNGC	2 cut(s)	835, 970
BlsI	GCNGC	2 cut(s)	836, 971
BmcAI	AGTACT	1 cut(s)	173
BmeT110I	CYCGRG	2 cut(s)	8, 863
BmgT120I	GGNCC	2 cut(s)	121, 122
BmiI	GGNNCC	4 cut(s)	122, 123, 124, 925
BmsI	GCATC	2 cut(s)	475, 610
BpuEI	CTTGAG	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	490, 828
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	821, 981
Bsh1236I	CGCG	2 cut(s)	841, 843
BshFI	GGCC	3 cut(s)	123, 555, 704
BsiHKCI	CYCGRG	2 cut(s)	8, 863
BsmAI	GTCTC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	123, 555, 704
Bso31I	GGTCTC	1 cut(s)	412
BsoBI	CYCGRG	2 cut(s)	8, 863
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
BspACI	CCGC	1 cut(s)	832
BspANI	GGCC	3 cut(s)	123, 555, 704
BspFNI	CGCG	2 cut(s)	841, 843
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	4 cut(s)	122, 123, 124, 925
BspMI	ACCTGC	1 cut(s)	963
BspPI	GGATC	3 cut(s)	129, 373, 723
BspTNI	GGTCTC	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
Bst6I	CTCTTC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	683, 706, 832, 839, 957
BstDEI	CTNAG	1 cut(s)	544
BstEII	GGTNACC	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	490, 828
BstFNI	CGCG	2 cut(s)	841, 843
BstHHI	GCGC	2 cut(s)	571, 843
BstKTI	GATC	6 cut(s)	137, 275, 368, 468, 718, 985
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	840
BstPI	GGTNACC	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	2 cut(s)	841, 843
BstV1I	GCAGC	2 cut(s)	821, 981
BstX2I	RGATCY	4 cut(s)	134, 272, 365, 982
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	4 cut(s)	134, 272, 365, 982
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	123, 555, 704
BtsCI	GGATG	2 cut(s)	490, 828
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	963
Cac8I	GCNNGC	5 cut(s)	683, 706, 832, 839, 957
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	2 cut(s)	571, 843
Cfr13I	GGNCC	2 cut(s)	121, 122
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	3 cut(s)	313, 566, 737
CviJI	RGCY	8 cut(s)	24, 123, 360, 555, 685, 704, 708, 924
CviKI_1	RGCY	8 cut(s)	24, 123, 360, 555, 685, 704, 708, 924
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	6 cut(s)	136, 274, 367, 467, 717, 984
DpnII	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
DraI	TTTAAA	1 cut(s)	996
DraIII	CACNNNGTG	2 cut(s)	63, 724
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	900
Eco81I	CCTNAGG	1 cut(s)	544
Eco88I	CYCGRG	2 cut(s)	8, 863
Eco91I	GGTNACC	1 cut(s)	780
EcoO109I	RGGNCCY	2 cut(s)	121, 122
EcoO65I	GGTNACC	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	3 cut(s)	316, 569, 740
FatI	CATG	3 cut(s)	312, 565, 736
FauI	CCCGC	1 cut(s)	839
FauNDI	CATATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	835, 970
FokI	GGATG	2 cut(s)	497, 835
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	835, 970
FspBI	CTAG	1 cut(s)	854
GlaI	GCGC	2 cut(s)	570, 842
GluI	GCNGC	2 cut(s)	835, 970
HaeIII	GGCC	3 cut(s)	123, 555, 704
HhaI	GCGC	2 cut(s)	571, 843
Hin1II	CATG	3 cut(s)	316, 569, 740
Hin6I	GCGC	2 cut(s)	569, 841
HinP1I	GCGC	2 cut(s)	569, 841
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	57, 69, 267
Hpy188I	TCNGA	4 cut(s)	365, 423, 470, 619
Hpy188III	TCNNGA	2 cut(s)	737, 910
Hpy8I	GTNNAC	3 cut(s)	57, 69, 267
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	3 cut(s)	263, 899, 1002
HpyCH4V	TGCA	6 cut(s)	96, 198, 242, 488, 522, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	840
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	3 cut(s)	263, 899, 1002
Hsp92II	CATG	3 cut(s)	316, 569, 740
HspAI	GCGC	2 cut(s)	569, 841
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
LmnI	GCTCC	1 cut(s)	929
LpnPI	CCDG	6 cut(s)	134, 151, 283, 718, 945, 958
Lsp1109I	GCAGC	2 cut(s)	821, 981
LweI	GCATC	2 cut(s)	475, 610
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	3 cut(s)	263, 899, 1002
MaeIII	GTNAC	2 cut(s)	747, 780
MalI	GATC	6 cut(s)	136, 274, 367, 467, 717, 984
MboI	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
MboII	GAAGA	4 cut(s)	102, 360, 621, 977
MfeI	CAATTG	1 cut(s)	127
MflI	RGATCY	4 cut(s)	134, 272, 365, 982
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	704
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	371, 573, 625, 633, 859, 872, 917
Mox20I	TGGCCA	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	4 cut(s)	209, 374, 753, 995
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	834
MunI	CAATTG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	198
MvnI	CGCG	2 cut(s)	841, 843
MwoI	GCNNNNNNNGC	1 cut(s)	840
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
NlaIII	CATG	3 cut(s)	316, 569, 740
NlaIV	GGNNCC	4 cut(s)	122, 123, 124, 925
PaeR7I	CTCGAG	2 cut(s)	8, 863
PagI	TCATGA	1 cut(s)	736
PaqCI	CACCTGC	1 cut(s)	963
PctI	GAATGC	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	836, 971
PleI	GAGTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	900
PmlI	CACGTG	1 cut(s)	900
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	900
PspCI	CACGTG	1 cut(s)	900
PspEI	GGTNACC	1 cut(s)	780
PspN4I	GGNNCC	4 cut(s)	122, 123, 124, 925
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	121, 122
PspXI	VCTCGAGB	2 cut(s)	8, 863
PsuI	RGATCY	4 cut(s)	134, 272, 365, 982
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	209, 374, 753, 995
SatI	GCNGC	2 cut(s)	835, 970
Sau3AI	GATC	6 cut(s)	134, 272, 365, 465, 715, 982
Sau96I	GGNCC	2 cut(s)	121, 122
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	9 cut(s)	65, 266, 545, 550, 617, 787, 902, 977, 1005
SfaNI	GCATC	2 cut(s)	475, 610
SfcI	CTRYAG	1 cut(s)	445
Sfr274I	CTCGAG	2 cut(s)	8, 863
SlaI	CTCGAG	2 cut(s)	8, 863
SmlI	CTYRAG	3 cut(s)	8, 330, 863
SmoI	CTYRAG	3 cut(s)	8, 330, 863
SsiI	CCGC	1 cut(s)	832
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	854
TaiI	ACGT	3 cut(s)	266, 902, 1005
TaqI	TCGA	3 cut(s)	9, 350, 864
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	4 cut(s)	209, 374, 753, 995
Tru9I	TTAA	4 cut(s)	209, 374, 753, 995
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	2 cut(s)	834, 969
TspDTI	ATGAA	4 cut(s)	17, 224, 593, 725
TspRI	CASTG	1 cut(s)	419
XapI	RAATTY	5 cut(s)	490, 633, 658, 667, 893
XhoI	CTCGAG	2 cut(s)	8, 863
XspI	CTAG	1 cut(s)	854
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.