pycom15g36120

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013298
Physical Location & Seq
Reverse (-)
36203743 .. 36205881
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGGAGCACTTCTCGCAGAAAATTTCAAAAGCAGTTTTCATATGTGCTACTATGGTGTCTGATGGGCAGAGACCTTTTGATGTGTTTGCTGCAGAGCTTGGTTCTGCAGAACAATTTATGCAAGGATCAAAGTTTTTGATTCATGGGAATGGGAAAGAAAAGCCTCCTACAGGATTCATGTTTGAGAAAGAGCAGATGAAAGGGTTATACTTCAACCAATCTAATGCGAAGGATGTTGCTCTGGCCATGGTTTCCATGAGACCTATTGCACTAGGTCCGATCATGGAAAAACTGTCATTGACACCTGAAAATTATGGTTCTAGCCGGCGATTCTTCATTCAAACATTGGATGATCGGGCACTTCCATCAGACGTCCAAGAAAAGCTAGTGAGGGAAAACCCACCGGAGGGAGTGTACAAGATAAAAGGGAGTGACCACTGCCCGTTCTTCTCAAAGCCGCAATCATTGCACAAAATGTTGTTGGAAATTGCTCAAATTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

168

Amino Acids

18.78

Weight (kDa)

7.78

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33990 AT4G09900
fragaria_vesca FvH4_5g32490
malus_domestica MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica Prupe.1G550200_v2.0.a1
pyrus_communis pycom08g18760 pycom15g36120
rosa_chinensis RchiOBHm_Chr7g0229071
rosa_laevigata RLG00000001533
rosa_multiflora Rmu_sc0000271.1_g000022
rosa_roxburghii Rroxscaffold_3G00230770
rosa_rugosa Rorug07G0255400
rosa_samantha Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana Rw7G033740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AciI CCGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 21, 495
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 170, 406, 407
AgsI TTSAA 3 cut(s) 27, 214, 341
AluBI AGCT 2 cut(s) 97, 385
AluI AGCT 2 cut(s) 97, 385
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 64, 253
AlwI GGATC 1 cut(s) 133
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 21, 495
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 56, 373
BcoDI GTCTC 2 cut(s) 64, 253
BfaI CTAG 3 cut(s) 272, 321, 386
BfmI CTRYAG 3 cut(s) 90, 105, 168
BisI GCNGC 2 cut(s) 90, 458
BlsI GCNGC 2 cut(s) 91, 459
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BplI GAGNNNNNCTC 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 2 cut(s) 64, 253
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 406, 407
Bse118I RCCGGY 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 238, 355
BseLI CCNNNNNNNGG 3 cut(s) 170, 406, 407
BseMI GCAATG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 325, 404
BslI CCNNNNNNNGG 3 cut(s) 170, 406, 407
BsmAI GTCTC 2 cut(s) 64, 253
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 2 cut(s) 64, 253
Bsp1286I GDGCHC 2 cut(s) 9, 361
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 3 cut(s) 125, 279, 352
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 245
BspMAI CTGCAG 2 cut(s) 94, 109
BspPI GGATC 1 cut(s) 133
BspTNI GGTCTC 2 cut(s) 64, 253
BsrDI GCAATG 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 125, 279, 352
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 466
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 238, 355
BstKTI GATC 3 cut(s) 128, 282, 355
BstMAI GTCTC 2 cut(s) 64, 253
BstMBI GATC 3 cut(s) 125, 279, 352
BstMWI GCNNNNNNNGC 2 cut(s) 13, 466
BstSFI CTRYAG 3 cut(s) 90, 105, 168
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 238, 355
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 415
CviAII CATG 5 cut(s) 143, 178, 247, 256, 283
CviJI RGCY 6 cut(s) 97, 163, 245, 324, 385, 457
CviKI_1 RGCY 6 cut(s) 97, 163, 245, 324, 385, 457
CviQI GTAC 1 cut(s) 415
DpnI GATC 3 cut(s) 127, 281, 354
DpnII GATC 3 cut(s) 125, 279, 352
EaeI YGGCCR 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 2 cut(s) 64, 253
Eco47I GGWCC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 5 cut(s) 146, 181, 250, 259, 286
FatI CATG 5 cut(s) 142, 177, 246, 255, 282
FauNDI CATATG 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 90, 458
FokI GGATG 2 cut(s) 245, 362
Fsp4HI GCNGC 2 cut(s) 90, 458
FspBI CTAG 3 cut(s) 272, 321, 386
GluI GCNGC 2 cut(s) 90, 458
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 325, 404
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 5 cut(s) 146, 181, 250, 259, 286
HinfI GANTC 3 cut(s) 139, 174, 330
HpaII CCGG 2 cut(s) 325, 404
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 61, 279, 370
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 92, 107, 121, 269, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 466
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 5 cut(s) 146, 181, 250, 259, 286
KroI GCCGGC 1 cut(s) 324
KroNI GCCGGC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 125, 279, 352
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 156, 227, 318, 338, 417
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 3 cut(s) 272, 321, 386
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 431
MalI GATC 3 cut(s) 127, 281, 354
MboI GATC 3 cut(s) 125, 279, 352
MboII GAAGA 2 cut(s) 325, 439
MhlI GDGCHC 2 cut(s) 9, 361
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 5 cut(s) 21, 113, 310, 486, 495
MluNI TGGCCA 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 3 cut(s) 174, 384, 400
Mox20I TGGCCA 1 cut(s) 245
MroNI GCCGGC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 2 cut(s) 325, 404
MwoI GCNNNNNNNGC 2 cut(s) 13, 466
NaeI GCCGGC 1 cut(s) 326
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 41
NdeII GATC 3 cut(s) 125, 279, 352
NgoMIV GCCGGC 1 cut(s) 324
NlaIII CATG 5 cut(s) 146, 181, 250, 259, 286
NmuCI GTSAC 1 cut(s) 431
PdiI GCCGGC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 139, 174, 330
PkrI GCNGC 2 cut(s) 91, 459
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 2 cut(s) 94, 109
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 147
SatI GCNGC 2 cut(s) 90, 458
Sau3AI GATC 3 cut(s) 125, 279, 352
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 2 cut(s) 9, 361
SetI ASST 7 cut(s) 76, 99, 265, 277, 307, 375, 387
SfcI CTRYAG 3 cut(s) 90, 105, 168
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 5 cut(s) 21, 113, 310, 486, 495
SsiI CCGC 1 cut(s) 458
SspMI CTAG 3 cut(s) 272, 321, 386
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 1 cut(s) 375
TasI AATT 5 cut(s) 21, 113, 310, 486, 495
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 460
TfiI GAWTC 3 cut(s) 139, 174, 330
TscAI CASTG 1 cut(s) 443
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 5 cut(s) 28, 131, 166, 212, 325
TspRI CASTG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 2 cut(s) 21, 495
XspI CTAG 3 cut(s) 272, 321, 386
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.