pycom15g36650

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004725
Physical Location & Seq
Forward (+)
36612189 .. 36617269
5081 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g36650.8

Sequence Viewer

Length: 801 bp
ATGAAACTCAAGTCTCACCAGTGGAGTTTAGCTGAGAATGCCCCTTCCACAAATCCAGAAGATGAATTCACAGAGGGTAAAGGTGATACAACAGATGTTTCAGGAATATCAACTTCTAGGATAGTGGAATTCAATACAGTTGAAGGCGCGTCTGATGGGGAGGACGTATCTGCAGCCGTTCTTCAACTATCTTCTGGTGCTGCTTTATTACCCCATCCCTCAAAGGCATTGACAGGTGGGGAGGATGCTTACTTTGTTAGTTGCCAAAATTGGTTAGGTGTGGCCGATGGAGTGGGTCAGTGGTCACTAGAAGGGGTTAATCCTGGACTATATGCTCGTGAACTCATGGAGAATTGTGAAAGGTTCATATCCGATTGCAAAGGTTTACCATTGACTGAACCAGAAGAAGTCCTTATTAAAGGTTCATCAAATACAAAATCTCCTGGATCATCCACGGTTCTGGTTGCTTATTTTGATGGTCAGGGTAATGAAAATTTGCTTTTGCAGGCTCTTCATGTGGCCAACATTGGAAACTCGGGATTTATCGTTATTAGAAATGGTGCTGTCTTTGAAAAATCATCACCAATGGTTCACGAATTCAATTTTCCAGTACGGGTTGAAAGAGGTGATGATCCCTCAGAACTTATAGAGGTACGTCAGAGTTGTTGGCCTCTAGTGCACAAGAGCTGGGGCGATCTAAATCTACAAGGAGCCCATTTGCTGATGCAGCCAAGGCATCTGGGTATGCCAGATATGGTGGCGGCAAGCTTGACGACGTGGTCGTTATCCTGTCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C SpoIIE

Protein Analysis

267

Amino Acids

28.71

Weight (kDa)

4.74

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 778
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 761
AclWI GGATC 2 cut(s) 454, 626
AcoI YGGCCR 2 cut(s) 282, 519
AcsI RAATTY 4 cut(s) 65, 128, 493, 596
AfaI GTAC 2 cut(s) 612, 654
AgsI TTSAA 6 cut(s) 133, 143, 185, 572, 601, 620
AjiI CACGTC 1 cut(s) 777
AjnI CCWGG 2 cut(s) 322, 442
AluBI AGCT 3 cut(s) 32, 687, 768
AluI AGCT 3 cut(s) 32, 687, 768
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 2 cut(s) 454, 626
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 3 cut(s) 282, 519, 668
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 3 cut(s) 173, 200, 727
ApoI RAATTY 4 cut(s) 65, 128, 493, 596
AspLEI GCGC 1 cut(s) 149
AsuHPI GGTGA 4 cut(s) 8, 95, 573, 638
AvaI CYCGRG 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 681
BalI TGGCCA 1 cut(s) 521
BanII GRGCYC 1 cut(s) 715
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 185, 187, 739
BccI CCATC 4 cut(s) 149, 222, 281, 470
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 324, 444
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 3 cut(s) 117, 308, 674
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 4 cut(s) 174, 201, 728, 762
BlsI GCNGC 4 cut(s) 175, 202, 729, 763
Bme1390I CCNGG 2 cut(s) 324, 444
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 777
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 324, 444
BmsI GCATC 3 cut(s) 235, 714, 745
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 453, 731
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bse1I ACTGG 2 cut(s) 19, 608
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 2 cut(s) 324, 444
BseDI CCNNGG 2 cut(s) 453, 731
BseGI GGATG 3 cut(s) 214, 250, 449
BseJI GATNNNNATC 1 cut(s) 699
BseMII CTCAG 2 cut(s) 24, 651
BseNI ACTGG 2 cut(s) 19, 608
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 3 cut(s) 185, 187, 739
BseYI CCCAGC 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 284, 521, 670
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 535
BsmAI GTCTC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 3 cut(s) 284, 521, 670
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 681, 715
Bsp143I GATC 3 cut(s) 446, 631, 694
BspACI CCGC 1 cut(s) 761
BspANI GGCC 3 cut(s) 284, 521, 670
BspCNI CTCAG 2 cut(s) 25, 650
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 712
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 454, 626
BspQI GCTCTTC 1 cut(s) 516
BsrI ACTGG 2 cut(s) 19, 608
BssECI CCNNGG 2 cut(s) 453, 731
BssMI GATC 3 cut(s) 446, 631, 694
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 731
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 324, 444
Bst4CI ACNGT 2 cut(s) 139, 457
Bst6I CTCTTC 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 507, 766
BstDEI CTNAG 2 cut(s) 33, 637
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 214, 250, 449
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 3 cut(s) 449, 634, 697
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 446, 631, 694
BstMWI GCNNNNNNNGC 4 cut(s) 38, 676, 727, 733
BstNI CCWGG 2 cut(s) 324, 444
BstSCI CCNGG 2 cut(s) 322, 442
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 185, 187, 739
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuRI GGCC 3 cut(s) 284, 521, 670
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 777
BtsCI GGATG 3 cut(s) 214, 250, 449
BtsIMutI CAGTG 2 cut(s) 26, 305
Cac8I GCNNGC 2 cut(s) 507, 766
CfoI GCGC 1 cut(s) 149
CseI GACGC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 611, 653
CviAII CATG 2 cut(s) 346, 515
CviQI GTAC 2 cut(s) 611, 653
DdeI CTNAG 2 cut(s) 33, 637
DpnI GATC 3 cut(s) 448, 633, 696
DpnII GATC 3 cut(s) 446, 631, 694
DrdI GACNNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 778
EaeI YGGCCR 2 cut(s) 282, 519
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 535
EcoRI GAATTC 3 cut(s) 65, 128, 596
EcoRII CCWGG 2 cut(s) 322, 442
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 731
FaeI CATG 2 cut(s) 349, 518
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 2 cut(s) 345, 514
FauNDI CATATG 1 cut(s) 795
Fnu4HI GCNGC 4 cut(s) 174, 201, 728, 762
FokI GGATG 3 cut(s) 201, 257, 436
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 4 cut(s) 174, 201, 728, 762
FspBI CTAG 3 cut(s) 117, 308, 674
GlaI GCGC 1 cut(s) 148
GluI GCNGC 4 cut(s) 174, 201, 728, 762
GsaI CCCAGC 1 cut(s) 691
HaeIII GGCC 3 cut(s) 284, 521, 670
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 349, 518
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 766
HphI GGTGA 4 cut(s) 8, 95, 573, 638
Hpy166II GTNNAC 4 cut(s) 341, 386, 592, 679
Hpy188I TCNGA 4 cut(s) 154, 373, 640, 660
Hpy188III TCNNGA 5 cut(s) 56, 102, 338, 537, 593
Hpy8I GTNNAC 4 cut(s) 341, 386, 592, 679
Hpy99I CGWCG 1 cut(s) 778
HpyAV CCTTC 3 cut(s) 54, 137, 305
HpyCH4III ACNGT 2 cut(s) 139, 457
HpyCH4IV ACGT 3 cut(s) 165, 655, 776
HpyCH4V TGCA 5 cut(s) 173, 378, 505, 679, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 676, 727, 733
HpyF3I CTNAG 2 cut(s) 33, 637
HpySE526I ACGT 3 cut(s) 165, 655, 776
Hsp92II CATG 2 cut(s) 349, 518
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 446, 631, 694
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 710
Lsp1109I GCAGC 3 cut(s) 185, 187, 739
LweI GCATC 3 cut(s) 235, 714, 745
MaeI CTAG 3 cut(s) 117, 308, 674
MaeII ACGT 3 cut(s) 165, 655, 776
MaeIII GTNAC 1 cut(s) 303
MalI GATC 3 cut(s) 448, 633, 696
MboI GATC 3 cut(s) 446, 631, 694
MboII GAAGA 5 cut(s) 71, 173, 183, 416, 503
MhlI GDGCHC 2 cut(s) 681, 715
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 7 cut(s) 65, 128, 268, 352, 493, 596, 601
MluNI TGGCCA 1 cut(s) 521
MnlI CCTC 8 cut(s) 67, 154, 229, 235, 617, 643, 646, 681
Mox20I TGGCCA 1 cut(s) 521
MscI TGGCCA 1 cut(s) 521
MseI TTAA 2 cut(s) 318, 417
Msp20I TGGCCA 1 cut(s) 521
MspR9I CCNGG 2 cut(s) 324, 444
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 2 cut(s) 324, 444
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 38, 676, 727, 733
NdeI CATATG 1 cut(s) 795
NdeII GATC 3 cut(s) 446, 631, 694
NlaIII CATG 2 cut(s) 349, 518
NlaIV GGNNCC 1 cut(s) 712
NmuCI GTSAC 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PctI GAATGC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 778
PfoI TCCNGGA 2 cut(s) 322, 442
PkrI GCNGC 4 cut(s) 175, 202, 729, 763
Psp6I CCWGG 2 cut(s) 322, 442
PspFI CCCAGC 1 cut(s) 687
PspGI CCWGG 2 cut(s) 322, 442
PspN4I GGNNCC 1 cut(s) 712
PstI CTGCAG 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 778
RsaI GTAC 2 cut(s) 612, 654
RsaNI GTAC 2 cut(s) 611, 653
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 318, 417
SatI GCNGC 4 cut(s) 174, 201, 728, 762
Sau3AI GATC 3 cut(s) 446, 631, 694
ScrFI CCNGG 2 cut(s) 324, 444
SduI GDGCHC 2 cut(s) 681, 715
SfaNI GCATC 3 cut(s) 235, 714, 745
SfcI CTRYAG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 7 cut(s) 65, 128, 268, 352, 493, 596, 601
SsiI CCGC 1 cut(s) 761
SspMI CTAG 3 cut(s) 117, 308, 674
StyD4I CCNGG 2 cut(s) 322, 442
StyI CCWWGG 1 cut(s) 731
TaaI ACNGT 2 cut(s) 139, 457
TaiI ACGT 3 cut(s) 168, 658, 779
TasI AATT 7 cut(s) 65, 128, 268, 352, 493, 596, 601
TauI GCSGC 1 cut(s) 764
Tru1I TTAA 2 cut(s) 318, 417
Tru9I TTAA 2 cut(s) 318, 417
TscAI CASTG 2 cut(s) 26, 305
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 3 cut(s) 173, 200, 727
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 6 cut(s) 17, 78, 355, 414, 503, 504
TspRI CASTG 2 cut(s) 26, 305
Tth111I GACNNNGTC 1 cut(s) 778
VneI GTGCAC 1 cut(s) 677
XapI RAATTY 4 cut(s) 65, 128, 493, 596
XspI CTAG 3 cut(s) 117, 308, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.