Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004725

Physical Location & Seq

Genomic Coordinates Reverse (-)

21641643 .. 21642964

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGAAATATGAATACAAAGTATCTTATCGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAGAGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCAATGAAAGTGTTGGATAGGAAGAACGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGCAAGAAGCATCACCTATTATCATGGACCAAAGACTAATGAAAATCTCAAGCAGTCGATTGGAAAGCGGTACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCTGCAGAACATGAGGAATTAACAACGTATGCAGATGAATATGCCATCGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAACTTTTGAAAGAAGATGCATGGGTGATTCAAACTTCAGATGTTGGAGCTTTGGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAAAATTGTAAAGCCACATTTAAATCGTCAACATCTGTAGCAAGTAAAGCCGCAAAGAAACAACTATCCTTCCAGGATTCTATTCCTATTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAATTAATGGTACAAGTGTAACTTTGCAAAATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C SpoIIE

Protein Analysis

324

Amino Acids

36.71

Weight (kDa)

9.12

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33500
fragaria_vesca	FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930 FvH4_5g30930
malus_domestica	MD08G1221000.v1.1 MD15G1411700.v1.1
prunus_persica	Prupe.1G557900_v2.0.a1
pyrus_communis	pycom08g19170 pycom15g36650
rosa_chinensis	RchiOBHm_Chr7g0226241
rosa_laevigata	RLG00000001755
rosa_multiflora	Rmu_sc0002055.1_g000001 Rmu_sc0013267.1_g000003
rosa_roxburghii	Rroxscaffold_3G00233100
rosa_rugosa	Rorug07G0235800 Rorug07G0235900
rosa_samantha	Rh7AG382800 Rh7BG370000 Rh7CG402300 Rh7DG381200
rosa_wichuraiana	Rw0G018620 Rw0G021000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	624
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	624
AciI	CCGC	3 cut(s)	385, 624, 711
AcsI	RAATTY	3 cut(s)	164, 490, 909
AcuI	CTGAAG	2 cut(s)	159, 531
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	389, 838, 859
AfeI	AGCGCT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	520, 542, 656, 915
AjnI	CCWGG	2 cut(s)	732, 903
AluBI	AGCT	5 cut(s)	38, 314, 560, 605, 964
AluI	AGCT	5 cut(s)	38, 314, 560, 605, 964
Ama87I	CYCGRG	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	832
ApeKI	GCWGC	2 cut(s)	431, 961
ApoI	RAATTY	3 cut(s)	164, 490, 909
AseI	ATTAAT	1 cut(s)	852
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	4 cut(s)	86, 322, 547, 581
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	344
BaeI	ACNNNNGTAYC	6 cut(s)	828, 828, 849, 861, 861, 882
BanI	GGYRCC	1 cut(s)	836
BbrPI	CACGTG	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	294, 482
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	734, 905
BfmI	CTRYAG	2 cut(s)	432, 696
BfoI	RGCGCY	1 cut(s)	834
BisI	GCNGC	3 cut(s)	432, 711, 962
BlsI	GCNGC	3 cut(s)	433, 712, 963
Bme1390I	CCNGG	2 cut(s)	734, 905
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	2 cut(s)	734, 905
BmsI	GCATC	4 cut(s)	160, 336, 431, 517
BpmI	CTGGAG	1 cut(s)	887
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	350, 798
Bsa29I	ATCGAT	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	734, 905
BseCI	ATCGAT	1 cut(s)	298
BseGI	GGATG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	964
Bsh1236I	CGCG	1 cut(s)	624
Bsh1285I	CGRYCG	1 cut(s)	628
BshNI	GGYRCC	1 cut(s)	836
BshVI	ATCGAT	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	147
BspACI	CCGC	3 cut(s)	385, 624, 711
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	1 cut(s)	838
BspMAI	CTGCAG	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	246
BssNAI	GTATAC	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	734, 905
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	764
BstDEI	CTNAG	3 cut(s)	105, 315, 827
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	833
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 707
BstNI	CCWGG	2 cut(s)	734, 905
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	732, 903
BstSFI	CTRYAG	2 cut(s)	432, 696
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	418
BstZ17I	GTATAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	764
CfoI	GCGC	1 cut(s)	833
Cfr13I	GGNCC	1 cut(s)	344
ClaI	ATCGAT	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	388, 837, 858
CviAII	CATG	8 cut(s)	11, 202, 236, 341, 440, 531, 632, 923
CviJI	RGCY	9 cut(s)	38, 314, 393, 560, 605, 674, 710, 882, 964
CviKI_1	RGCY	9 cut(s)	38, 314, 393, 560, 605, 674, 710, 882, 964
CviQI	GTAC	3 cut(s)	388, 837, 858
DdeI	CTNAG	3 cut(s)	105, 315, 827
DraI	TTTAAA	2 cut(s)	643, 682
DrdI	GACNNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	344
Eco47III	AGCGCT	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	159, 531
Eco72I	CACGTG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	732, 903
EcoT22I	ATGCAT	1 cut(s)	532
FaeI	CATG	8 cut(s)	14, 205, 239, 344, 443, 534, 635, 926
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 853, 885
FatI	CATG	8 cut(s)	10, 201, 235, 340, 439, 530, 631, 922
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	432, 711, 962
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	3 cut(s)	432, 711, 962
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	3 cut(s)	432, 711, 962
GsaI	CCCAGC	1 cut(s)	968
GsuI	CTGGAG	1 cut(s)	887
HaeII	RGCGCY	1 cut(s)	834
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	8 cut(s)	14, 205, 239, 344, 443, 534, 635, 926
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	6 cut(s)	45, 273, 538, 737, 818, 919
HphI	GGTGA	4 cut(s)	86, 322, 547, 581
Hpy166II	GTNNAC	2 cut(s)	27, 690
Hpy188I	TCNGA	3 cut(s)	106, 178, 550
Hpy188III	TCNNGA	4 cut(s)	149, 413, 653, 815
Hpy8I	GTNNAC	2 cut(s)	27, 690
HpyAV	CCTTC	4 cut(s)	560, 650, 739, 944
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	3 cut(s)	264, 455, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 707
HpyF3I	CTNAG	3 cut(s)	105, 315, 827
HpySE526I	ACGT	3 cut(s)	264, 455, 586
Hsp92II	CATG	8 cut(s)	14, 205, 239, 344, 443, 534, 635, 926
HspAI	GCGC	1 cut(s)	831
KpnI	GGTACC	1 cut(s)	840
LmnI	GCTCC	2 cut(s)	557, 906
LpnPI	CCDG	8 cut(s)	45, 65, 719, 746, 819, 890, 917, 950
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	4 cut(s)	160, 336, 431, 517
MaeII	ACGT	3 cut(s)	264, 455, 586
MaeIII	GTNAC	2 cut(s)	752, 865
MboII	GAAGA	9 cut(s)	40, 271, 282, 509, 517, 520, 536, 924, 959
MfeI	CAATTG	1 cut(s)	757
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	3 cut(s)	231, 535, 592
MnlI	CCTC	4 cut(s)	10, 13, 288, 436
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	8 cut(s)	210, 293, 449, 486, 594, 642, 681, 852
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	1 cut(s)	964
MspR9I	CCNGG	2 cut(s)	734, 905
MunI	CAATTG	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	734, 905
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	2 cut(s)	428, 707
NlaIII	CATG	8 cut(s)	14, 205, 239, 344, 443, 534, 635, 926
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	5 cut(s)	273, 538, 737, 818, 919
PfoI	TCCNGGA	2 cut(s)	732, 903
PkrI	GCNGC	3 cut(s)	433, 712, 963
PleI	GAGTC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	587
PshBI	ATTAAT	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	732, 903
PspCI	CACGTG	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	964
PspGI	CCWGG	2 cut(s)	732, 903
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	964
RsaI	GTAC	3 cut(s)	389, 838, 859
RsaNI	GTAC	3 cut(s)	388, 837, 858
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	8 cut(s)	210, 293, 449, 486, 594, 642, 681, 852
SatI	GCNGC	3 cut(s)	432, 711, 962
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	734, 905
SfaNI	GCATC	4 cut(s)	160, 336, 431, 517
SfcI	CTRYAG	2 cut(s)	432, 696
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	147
SmiI	ATTTAAAT	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	3 cut(s)	147, 365, 813
SmoI	CTYRAG	3 cut(s)	147, 365, 813
SsiI	CCGC	3 cut(s)	385, 624, 711
StyD4I	CCNGG	2 cut(s)	732, 903
SwaI	ATTTAAAT	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	3 cut(s)	267, 458, 589
TaqI	TCGA	4 cut(s)	148, 298, 374, 477
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	5 cut(s)	273, 538, 737, 818, 919
Tru1I	TTAA	8 cut(s)	210, 293, 449, 486, 594, 642, 681, 852
Tru9I	TTAA	8 cut(s)	210, 293, 449, 486, 594, 642, 681, 852
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	431, 961
Tsp45I	GTSAC	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	3 cut(s)	164, 490, 909
XceI	RCATGY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.