Rh7DG381200

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004725
Physical Location & Seq
Reverse (-)
51820484 .. 51829433
8950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG381200.1

Sequence Viewer

Length: 2208 bp
ATGGGTGATCCTTTTGTCTGCCTCCTCAAAACTCGCTGCTTCACCTTCTCTTCCTCCTTCCTTCCCTCCAGACCTTTTCTGCACAACAAGCTCAGAACTCGGACTCCGCTTGGATTTCCAAAGCCAAGGCCAACGACGACGACGCTTCCGCATTCGTCATCGTCATCGTCATCATCACAATTCGTTCTCATTTCGACTACCGAGTGCTCCGACGGTAGCGTCGTCTTCCGATTTGGCGACGAGAGCGAGAAGGCTGCTTTTGATGAGATTAATAGTCGTCTGGAGGATGCGGAGTTGAGTGAAGGATTGGTTGGCGAAAGCAATGTGGAAGAATCGGAGATTGATGCTTCTCCGGCGAGTTCACCTGAGGAGACTGCCTTCCTTGATTTGACCTCAGCAGATGAAGTCCAAAGCTCAGCAGTTTTAGGTGACAGCTCCCCTTCCACCAATTCACAAGATGTATTCACAGAGGCTGAATCACATAGCAGGGATGTTTCAGGAGCATCAGCTCCTAGGAAATTGGAATTCCATACACTTGAAGGCTCAGAGAGGTATCCGCCCACTATTTCAGAAGATGAATTCACAGAGGGTGAAGCACATAGAAGAGATGTCACAGGAGCATCAACTCCTATGCCAGTGGAATTGCATACATCTGAAGGCTCTGAGGGGTATCCTTCTGCAAAGTCAGAAGATGAATTAACAGAGGGTAAAGAAGATACAACATATGTCATAGGAGCTTCAACTCCTGCGCTAGAGGAATTGCATACATCTGAAGGCTCTGAGGGTTATCCTTCTACAAAGTCAGAAGATGAATTAACAGAGGCTAAAGAAGATAGAAGAGATGTCACAGGAGCATCAACTCATACGACAGTGGAATTGCATACATCTGAAGGCTCTGAGGGGTATCCATCTACAGAATCAGAAGATGAAGTAACAGAGGGCAAAGAACATAGAAGAGATGTCACAGGAGCATCAACTCCTATGCCAGTGGAATTGCATGCATTTGAAGGCTCTGAGGGGTATCATTCTACAAAGTCAGAAGAGGAATCAACAGAGGGTAAAGAAGATAGAACACCAACTCCTAGGATGGTTATATTGCATACTGTTGAAGGCTCTGCGGGATATCCCTCCACAAAGTCAGAAGATGAATTGACAGAGGGGAAAGCCCATCAAAGAGATGTCTCAGGAGCATCAACTGATAGGACAGAGGATATGCATACTGTTGAAGGTGCTGAGGAGAATGCTTCCATAAATTCAGAGGATGAATTTGCAGATGATAAAACACATAGAAGAGATGCTTCAGGAGAATTAATGCCAAGGATATTGGAATTTCATTCAGTTGAAGGCGCTTTAGGGTATCCTTTAACAAAATCAGAAGATGGATCAACAGGGGGTAAAGAACAAAGAGATGTTTCAGGAGCATCAACTCCTAGAACAGTGGAATTGCTTACAGTTGAAGGTGCTAAGGGGTATGCTTCCACAAAGTTAGAAGATAAATTTGCAGAGGGTAAACTAGATAGAACAGATGTTTTAGAAGCCGCAACTCCCAGGACAGTGGAATTGCAAACAGTTGAACGTGCTAAGGATACCCCTTCAAAAAAGTCAGAAGATGAATTCACAGAGGGTAAAGCACATATAAGAAATGTTTCGGGAGCATCAACTCCTAGGATAGTGGAATTGCATACAGTTGAAGGCGCTGAAGGGGAGGACATCGCTGCACCATTACTTCTACTATCGACTGGTGCTGCATTATTACCGCATCCCTCAAAGGCATTGACAGGTGGGGAGGATGCTTGCTTTGTTGCTTCCGGAAACTGGCTAGGTGTGGCTGATGGAGTTAGTCAATGGTCACTGGAAGGGATTAATCCTGGGCTATATGCCCATGAACTCATGAAGAACTGTGAAAGGTTTCTATCCGATAGCAAAGGAATACCATTGACTAAACCAGAAGACGTCCTTGTTAGCGGTGCTACACAAACAAAATCTCCTGGTTCATCTACAGTTTTAGTCGCTTACTTTGATGGTCAGGCCCTCCATGTGGCAAACATTGGTAACTCAGGATTTATCATAATCAGAAATGGTGCTGTTTTTAAGAGATCATCTCCAATGATTCATGGCTTCAATTTTCCATTACAAACTGTCAGAGGCGTTGACCCCTCGGAACTAATAGAGGTATGTTACAGTATTACATTCCCAAATAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C SpoIIE

Protein Analysis

735

Amino Acids

79.07

Weight (kDa)

4.63

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 1 cut(s) 1956
AccIII TCCGGA 1 cut(s) 1808
AciI CCGC 8 cut(s) 107, 149, 290, 557, 1118, 1539, 1757, 1965
AclWI GGATC 2 cut(s) 2, 1390
AcsI RAATTY 7 cut(s) 524, 578, 1252, 1265, 1328, 1496, 1613
AcuI CTGAAG 5 cut(s) 675, 792, 909, 1284, 1719
AcyI GRCGYC 1 cut(s) 1953
AfiI CCNNNNNNNGG 2 cut(s) 1815, 2038
AjnI CCWGG 3 cut(s) 1547, 1867, 1987
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AloI GAACNNNNNNTCC 4 cut(s) 88, 120, 1063, 1095
AluBI AGCT 5 cut(s) 91, 414, 435, 509, 737
AluI AGCT 5 cut(s) 91, 414, 435, 509, 737
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 365, 1186
AlwI GGATC 2 cut(s) 2, 1390
AlwNI CAGNNNCTG 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 1808
AoxI GGCC 2 cut(s) 128, 2028
ApeKI GCWGC 4 cut(s) 36, 254, 1715, 1745
ApoI RAATTY 7 cut(s) 524, 578, 1252, 1265, 1328, 1496, 1613
AseI ATTAAT 3 cut(s) 270, 1310, 1863
Asp700I GAANNNNTTC 2 cut(s) 1645, 1908
AspA2I CCTAGG 3 cut(s) 512, 1082, 1664
AspLEI GCGC 3 cut(s) 751, 1349, 1697
AspS9I GGNCC 1 cut(s) 2029
AsuHPI GGTGA 5 cut(s) 17, 34, 354, 440, 602
AvrII CCTAGG 3 cut(s) 512, 1082, 1664
AxyI CCTNAGG 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 217, 1956
Bbv12I GWGCWC 1 cut(s) 209
BbvCI CCTCAGC 2 cut(s) 394, 1233
BbvI GCAGC 4 cut(s) 23, 241, 1702, 1732
BccI CCATC 6 cut(s) 916, 1081, 1176, 1373, 1826, 2015
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 3 cut(s) 1549, 1869, 1989
BciVI GTATCC 5 cut(s) 564, 681, 915, 1368, 1579
BcoDI GTCTC 2 cut(s) 365, 1186
BfaI CTAG 8 cut(s) 513, 752, 1083, 1431, 1514, 1665, 1820, 2206
BfmI CTRYAG 2 cut(s) 912, 1998
BfoI RGCGCY 2 cut(s) 1350, 1698
BfuI GTATCC 5 cut(s) 564, 681, 915, 1368, 1579
BisI GCNGC 5 cut(s) 37, 255, 1539, 1716, 1746
BlnI CCTAGG 3 cut(s) 512, 1082, 1664
BlpI GCTNAGC 1 cut(s) 415
BlsI GCNGC 5 cut(s) 38, 256, 1540, 1717, 1747
Bme1390I CCNGG 3 cut(s) 1549, 1869, 1989
BmgT120I GGNCC 1 cut(s) 2029
BmrFI CCNGG 3 cut(s) 1549, 1869, 1989
BpiI GAAGAC 2 cut(s) 217, 1956
BplI GAGNNNNNCTC 2 cut(s) 2086, 2118
BpmI CTGGAG 2 cut(s) 52, 302
Bpu10I CCTNAGC 4 cut(s) 394, 1233, 1464, 1581
Bpu1102I GCTNAGC 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 1953
BsaJI CCNNGG 8 cut(s) 125, 512, 1082, 1316, 1547, 1664, 1868, 2157
BsaWI WCCGGW 1 cut(s) 1808
BsaXI ACNNNNNCTCC 6 cut(s) 88, 118, 1063, 1093, 1969, 1999
Bsc4I CCNNNNNNNGG 2 cut(s) 1815, 2038
Bse1I ACTGG 5 cut(s) 635, 986, 1744, 1820, 1857
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 1808
BseBI CCWGG 3 cut(s) 1549, 1869, 1989
BseDI CCNNGG 8 cut(s) 125, 512, 1082, 1316, 1547, 1664, 1868, 2157
BseGI GGATG 6 cut(s) 292, 496, 1092, 1267, 1759, 1795
BseLI CCNNNNNNNGG 2 cut(s) 1815, 2038
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 5 cut(s) 635, 986, 1744, 1820, 1857
BseRI GAGGAG 3 cut(s) 14, 383, 1250
BseXI GCAGC 4 cut(s) 23, 241, 1702, 1732
BsgI GTGCAG 2 cut(s) 65, 1701
BshFI GGCC 2 cut(s) 130, 2030
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 353, 1809
BslI CCNNNNNNNGG 2 cut(s) 1815, 2038
BsmAI GTCTC 2 cut(s) 365, 1186
BsmI GAATGC 2 cut(s) 151, 1246
BsnI GGCC 2 cut(s) 130, 2030
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 1808
Bsp143I GATC 3 cut(s) 7, 1382, 2096
Bsp1720I GCTNAGC 1 cut(s) 415
BspACI CCGC 8 cut(s) 107, 149, 290, 557, 1118, 1539, 1757, 1965
BspANI GGCC 2 cut(s) 130, 2030
BspEI TCCGGA 1 cut(s) 1808
BspHI TCATGA 1 cut(s) 1890
BspPI GGATC 2 cut(s) 2, 1390
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 5 cut(s) 635, 986, 1744, 1820, 1857
BssECI CCNNGG 8 cut(s) 125, 512, 1082, 1316, 1547, 1664, 1868, 2157
BssMI GATC 3 cut(s) 7, 1382, 2096
BssNI GRCGYC 1 cut(s) 1953
BssT1I CCWWGG 5 cut(s) 125, 512, 1082, 1316, 1664
Bst2UI CCWGG 3 cut(s) 1549, 1869, 1989
Bst6I CTCTTC 6 cut(s) 55, 598, 832, 949, 1035, 1285
BstACI GRCGYC 1 cut(s) 1953
BstC8I GCNNGC 2 cut(s) 999, 1795
BstF5I GGATG 6 cut(s) 292, 496, 1092, 1267, 1759, 1795
BstH2I RGCGCY 2 cut(s) 1350, 1698
BstHHI GCGC 3 cut(s) 751, 1349, 1697
BstKTI GATC 3 cut(s) 10, 1385, 2099
BstMAI GTCTC 2 cut(s) 365, 1186
BstMBI GATC 3 cut(s) 7, 1382, 2096
BstMWI GCNNNNNNNGC 3 cut(s) 88, 243, 353
BstNI CCWGG 3 cut(s) 1549, 1869, 1989
BstNSI RCATGY 1 cut(s) 1001
BstSCI CCNGG 3 cut(s) 1547, 1867, 1987
BstSFI CTRYAG 2 cut(s) 912, 1998
BstV1I GCAGC 4 cut(s) 23, 241, 1702, 1732
BstV2I GAAGAC 2 cut(s) 217, 1956
BstXI CCANNNNNNTGG 1 cut(s) 1555
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 5 cut(s) 564, 681, 915, 1368, 1579
BsuRI GGCC 2 cut(s) 130, 2030
BtgZI GCGATG 1 cut(s) 1696
BtsCI GGATG 6 cut(s) 292, 496, 1092, 1267, 1759, 1795
BtsIMutI CAGTG 6 cut(s) 642, 876, 993, 1443, 1560, 1850
Cac8I GCNNGC 2 cut(s) 999, 1795
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 1890
CfoI GCGC 3 cut(s) 751, 1349, 1697
Cfr13I GGNCC 1 cut(s) 2029
CseI GACGC 2 cut(s) 151, 208
CviAII CATG 5 cut(s) 998, 1883, 1891, 2036, 2114
DpnI GATC 3 cut(s) 9, 1384, 2098
DpnII GATC 3 cut(s) 7, 1382, 2096
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 6 cut(s) 55, 598, 832, 949, 1035, 1285
EarI CTCTTC 6 cut(s) 55, 598, 832, 949, 1035, 1285
EciI GGCGGA 1 cut(s) 546
Eco130I CCWWGG 5 cut(s) 125, 512, 1082, 1316, 1664
Eco32I GATATC 1 cut(s) 1124
Eco57I CTGAAG 5 cut(s) 675, 792, 909, 1284, 1719
Eco81I CCTNAGG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 2029
EcoRI GAATTC 3 cut(s) 524, 578, 1613
EcoRII CCWGG 3 cut(s) 1547, 1867, 1987
EcoRV GATATC 1 cut(s) 1124
EcoT14I CCWWGG 5 cut(s) 125, 512, 1082, 1316, 1664
EcoT22I ATGCAT 2 cut(s) 1003, 1218
ErhI CCWWGG 5 cut(s) 125, 512, 1082, 1316, 1664
FaeI CATG 5 cut(s) 1001, 1886, 1894, 2039, 2117
FalI AAGNNNNNCTT 4 cut(s) 1282, 1314, 1941, 1973
FatI CATG 5 cut(s) 997, 1882, 1890, 2035, 2113
FauI CCCGC 1 cut(s) 1111
FauNDI CATATG 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 37, 255, 1539, 1716, 1746
FokI GGATG 6 cut(s) 299, 503, 1099, 1274, 1746, 1802
Fsp4HI GCNGC 5 cut(s) 37, 255, 1539, 1716, 1746
FspBI CTAG 8 cut(s) 513, 752, 1083, 1431, 1514, 1665, 1820, 2206
GlaI GCGC 3 cut(s) 750, 1348, 1696
GluI GCNGC 5 cut(s) 37, 255, 1539, 1716, 1746
GsuI CTGGAG 2 cut(s) 52, 302
HaeII RGCGCY 2 cut(s) 1350, 1698
HaeIII GGCC 2 cut(s) 130, 2030
HapII CCGG 2 cut(s) 353, 1809
HgaI GACGC 2 cut(s) 151, 208
HhaI GCGC 3 cut(s) 751, 1349, 1697
Hin1I GRCGYC 1 cut(s) 1953
Hin1II CATG 5 cut(s) 1001, 1886, 1894, 2039, 2117
Hin6I GCGC 3 cut(s) 749, 1347, 1695
HinP1I GCGC 3 cut(s) 749, 1347, 1695
HincII GTYRAC 1 cut(s) 2152
HindII GTYRAC 1 cut(s) 2152
HinfI GANTC 6 cut(s) 103, 332, 476, 917, 1046, 2110
HpaII CCGG 2 cut(s) 353, 1809
HphI GGTGA 5 cut(s) 17, 34, 354, 440, 602
Hpy166II GTNNAC 3 cut(s) 362, 1511, 2152
Hpy8I GTNNAC 3 cut(s) 362, 1511, 2152
Hpy99I CGWCG 6 cut(s) 139, 142, 145, 215, 224, 242
HpyCH4IV ACGT 2 cut(s) 1576, 1953
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 243, 353
HpySE526I ACGT 2 cut(s) 1576, 1953
Hsp92I GRCGYC 1 cut(s) 1953
Hsp92II CATG 5 cut(s) 1001, 1886, 1894, 2039, 2117
HspAI GCGC 3 cut(s) 749, 1347, 1695
Kpn2I TCCGGA 1 cut(s) 1808
Kzo9I GATC 3 cut(s) 7, 1382, 2096
Lsp1109I GCAGC 4 cut(s) 23, 241, 1702, 1732
MaeI CTAG 8 cut(s) 513, 752, 1083, 1431, 1514, 1665, 1820, 2206
MaeII ACGT 2 cut(s) 1576, 1953
MaeIII GTNAC 8 cut(s) 428, 610, 844, 931, 961, 1848, 2051, 2177
MalI GATC 3 cut(s) 9, 1384, 2098
MboI GATC 3 cut(s) 7, 1382, 2096
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 234
Mph1103I ATGCAT 2 cut(s) 1003, 1218
MroI TCCGGA 1 cut(s) 1808
MroXI GAANNNNTTC 2 cut(s) 1645, 1908
MseI TTAA 7 cut(s) 270, 698, 815, 1310, 1364, 1863, 2091
MspI CCGG 2 cut(s) 353, 1809
MspR9I CCNGG 3 cut(s) 1549, 1869, 1989
Mva1269I GAATGC 2 cut(s) 151, 1246
MvaI CCWGG 3 cut(s) 1549, 1869, 1989
MwoI GCNNNNNNNGC 3 cut(s) 88, 243, 353
NdeI CATATG 1 cut(s) 724
NdeII GATC 3 cut(s) 7, 1382, 2096
NlaIII CATG 5 cut(s) 1001, 1886, 1894, 2039, 2117
NmuCI GTSAC 5 cut(s) 428, 610, 844, 961, 1848
NsiI ATGCAT 2 cut(s) 1003, 1218
NspI RCATGY 1 cut(s) 1001
PaeI GCATGC 1 cut(s) 1001
PagI TCATGA 1 cut(s) 1890
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 2 cut(s) 151, 1246
PdmI GAANNNNTTC 2 cut(s) 1645, 1908
PfeI GAWTC 5 cut(s) 332, 476, 917, 1046, 2110
PkrI GCNGC 5 cut(s) 38, 256, 1540, 1717, 1747
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshBI ATTAAT 3 cut(s) 270, 1310, 1863
Psp6I CCWGG 3 cut(s) 1547, 1867, 1987
PspGI CCWGG 3 cut(s) 1547, 1867, 1987
PspPI GGNCC 1 cut(s) 2029
PstNI CAGNNNCTG 1 cut(s) 473
SaqAI TTAA 7 cut(s) 270, 698, 815, 1310, 1364, 1863, 2091
SatI GCNGC 5 cut(s) 37, 255, 1539, 1716, 1746
Sau3AI GATC 3 cut(s) 7, 1382, 2096
Sau96I GGNCC 1 cut(s) 2029
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 3 cut(s) 1549, 1869, 1989
SduI GDGCHC 1 cut(s) 209
SfcI CTRYAG 2 cut(s) 912, 1998
SphI GCATGC 1 cut(s) 1001
SsiI CCGC 8 cut(s) 107, 149, 290, 557, 1118, 1539, 1757, 1965
SspMI CTAG 8 cut(s) 513, 752, 1083, 1431, 1514, 1665, 1820, 2206
StyD4I CCNGG 3 cut(s) 1547, 1867, 1987
StyI CCWWGG 5 cut(s) 125, 512, 1082, 1316, 1664
TaiI ACGT 2 cut(s) 1579, 1956
TaqI TCGA 2 cut(s) 194, 1736
TauI GCSGC 1 cut(s) 1541
TfiI GAWTC 5 cut(s) 332, 476, 917, 1046, 2110
Tru1I TTAA 7 cut(s) 270, 698, 815, 1310, 1364, 1863, 2091
Tru9I TTAA 7 cut(s) 270, 698, 815, 1310, 1364, 1863, 2091
TscAI CASTG 6 cut(s) 642, 876, 993, 1443, 1560, 1857
TseFI GTSAC 5 cut(s) 428, 610, 844, 961, 1848
TseI GCWGC 4 cut(s) 36, 254, 1715, 1745
Tsp45I GTSAC 5 cut(s) 428, 610, 844, 961, 1848
TspRI CASTG 6 cut(s) 642, 876, 993, 1443, 1560, 1857
VspI ATTAAT 3 cut(s) 270, 1310, 1863
XapI RAATTY 7 cut(s) 524, 578, 1252, 1265, 1328, 1496, 1613
XceI RCATGY 1 cut(s) 1001
XmaJI CCTAGG 3 cut(s) 512, 1082, 1664
XmnI GAANNNNTTC 2 cut(s) 1645, 1908
XspI CTAG 8 cut(s) 513, 752, 1083, 1431, 1514, 1665, 1820, 2206
ZraI GACGTC 1 cut(s) 1954
Zsp2I ATGCAT 2 cut(s) 1003, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.