Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Forward (+)

38741289 .. 38749661

Gene Structure 8373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGATGTGGAGGAGGAATACGCATTCGCAACCAAAATCCATAAAACCCCTCCCTCTCGATCTCCTCACCCACAATTTTTCAGAAATGGCTGCCGCTTTCGTATTTGAGCCCCCAAGTGACGAAGAATATTCCGACGCCGAAGAACAACAACCGCAGGAGGAGGAGGAAGAAGATGAACAGGAAGAAGACGAAGCAGCCCTGAAACCCTCTCGAGCTTCTCGCCACTCTGAGTCCCCGTGGGACTTCGCTTCCTACTCCGAAACAGTCGCCCAAGAACATGCTCGCCGGAGCACCACCTCCGTCGATTTCAAGATCTCCAAAGCCCTGCAGCAACGATCAGTCCCCAGTGCCGTTGCCCACGACGATGATGATAGCTCCGAATCCCAATCCGAATCCGAACCCGAATCCGACAAACAGGAAGATTATAAGCCGGAAGATGATGAAGTAGTAGATGATGCCACTAATGCCGGTGATGGTAAAAAGCCATTTTTCTCCCCATCAGATGGAACCTCCTTTCATGCAAACTCGTTCATGGAGCTCCATTTGTCTCGCCCTTTGCTTCGGGCGTGTGAGAAACTGGGTTATACCAAGCCCACTCCTATTCAGGCGGCGTGCATACCATTAGCTCTGAGTGGGCGGGATATATGTGGGAGTGCGATTACTGGTTCTGGCAAGACTGCTGCTTTTGCGTTACCTACTCTAGAAAGACTATTGTTTCGTCCAAAGCGGGTGCCCGCTATTAGGGTCCTCGTTCTCACCCCAGCCAGAGAACTGGCGGTTCAGGTTCATAGTATGATTCAGAAACTTGCCCAGTTTACTGATATCAGATGCTGCCTGGTTGTTGGAGGGCTTTCATTAAAGGCACAAGAGGCAGACTTGAGAACAATGCCCGACATTGTTGTGGCTACTCCAGGACGCATTATCGATCATTTACGCAATTCAATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATTCTTGACGAGGCAGATCGCCTTTTGGAGGTTGGATTTAGTGCTGAGATTCGTGAGCTGATTCGAGTATGCCCCAAAAGGAGACAAACCATGCTATTTTCAGCTACAATGACTGAAGAAGTTGACGAGCTTGTTAAGCTTTCTCTGACCAAACCATTACGCCTCTCGGCTGACCCATCTGCGAAACGGCCAGTCACACTAACGGAAGAAGTGGTTAGGATACGACGGATGCGTGAAGTAAATCAGGAAGCAGTTCTACTTGCATTATGTTCAAAGACATTCACAGCCAGAGTGATCATATTCAGTGGCACAAAACAGGCTGCACATAGGTTGAAGATTTTGTTTGGGTTAGCTGGGCTTAAGGCTGCTGAGCTTCATGGCAACCTTACACAAGTCCAGCGTCTAGATGCTTTGGAACTTTTCAGGAAGCAGGGAGTTGACTATTTGATTGCAACTGATGTGGCTGCTCGTGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCATGTCCTCGTGACCTTACAAGCTATGTTCATAGAGTGGGTCGTACAGCAAGAGCAGGCAGAGAAGGATATGCCGTTACTTTTGTGACAGATAATGACCGATCTCTTTTAAAAGCCATTGCAAAAAGAGCTGGTTCAAAGTTAAGGAGTCGAATTGTTGCAGAGCAATCAATTACTAAGTGGTGTCAGATTATTGAGGAAATGGAAGATCAAGTGGCCACAATTCTTCAAGAAGAGAGGGAAGAGCAAGCACTAAGAAAAGCTGAAATGGAAGCATCGAAGGCTGAGAATATGATTGTGCACAAAGATGAAATTTATTCACGCCCCAAAAGAACCTGGTTTGTAACAGAAAAGGAAAAAAGGATGGTAGTGAATGCAGATAAGGCATCCAATGAAAGTGAAAAGCACCCTGGAAAAGAGGTAATCAGTGCCCAACAAGCTGAAGATTTAAAACTGAAAGAAAAGAGGAAGCGGGAGCGTGAGAAAAATTTGCCTCGAAAGAAGCGACGAAAATTGGAAGCAGCTAGGGAAATGTTAGAGGAGGAAAATCAAAATGAAAAGTTTGATGGTAGTGGAAAAAAGGAGAAGACCGGAACGCCACTTGTTGACCTGGCTTACCGACGGGCAAAAGCCGTGAAGGCTGCAAAGAAGGCAACAGATGCTGGCAAAATTGTGAGGAAGACTAGTAAGAAATCTAGTCGTCCCCCCCAAAAAACTCAGTCAAGGACAGAGGAGATGCAGGACCTGTTCCAGAGTGACATGAGTCAAAGGAGGCAGAACAAAAAAAGTAGTGGAGTCGGAAATAAGAAGTCCAAGAATTCTTTTAAGAGCAAGTCGAGGTATGAAGTACCTTATCTTGTGATTAATCCTCCTTTCGATTTTGATTTGTATCTTACGGTCTTACTAAGCATTTTTGTGCTGTACATAGACTTTATGTACAAGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

812

Amino Acids

91.63

Weight (kDa)

8.63

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	199 - 369	9.9e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	410 - 515	2.5e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	426, 1478
AccB1I	GGYRCC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	503
AciI	CCGC	8 cut(s)	93, 152, 608, 637, 727, 735, 776, 1957
AcoI	YGGCCR	2 cut(s)	1163, 1701
AcsI	RAATTY	3 cut(s)	1797, 1972, 2302
AcuI	CTGAAG	2 cut(s)	1110, 1947
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	4 cut(s)	1531, 2334, 2408, 2423
AfiI	CCNNNNNNNGG	3 cut(s)	503, 741, 1003
AflII	CTTAAG	1 cut(s)	1334
AgsI	TTSAA	7 cut(s)	310, 942, 1248, 1309, 1469, 1623, 1715
AhlI	ACTAGT	1 cut(s)	2168
AjnI	CCWGG	5 cut(s)	834, 910, 1820, 1894, 2094
Alw21I	GWGCWC	3 cut(s)	293, 540, 1788
Alw26I	GTCTC	2 cut(s)	552, 1051
Alw44I	GTGCAC	1 cut(s)	1784
AlwNI	CAGNNNCTG	3 cut(s)	831, 2147, 2230
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	1163, 1701
ApaLI	GTGCAC	1 cut(s)	1784
ApoI	RAATTY	3 cut(s)	1797, 1972, 2302
ArsI	GACNNNNNNTTYG	2 cut(s)	699, 731
AseI	ATTAAT	1 cut(s)	2349
Asp700I	GAANNNNTTC	1 cut(s)	1227
AspS9I	GGNCC	2 cut(s)	745, 2227
AsuHPI	GGTGA	3 cut(s)	58, 482, 748
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	745, 2227
BaeGI	GKGCMC	3 cut(s)	735, 1788, 1918
BalI	TGGCCA	1 cut(s)	1703
BanI	GGYRCC	1 cut(s)	730
BanII	GRGCYC	2 cut(s)	111, 540
BarI	GAAGNNNNNNTAC	2 cut(s)	1215, 1247
BauI	CACGAG	2 cut(s)	1443, 1494
BbsI	GAAGAC	3 cut(s)	192, 2078, 2171
Bbv12I	GWGCWC	3 cut(s)	293, 540, 1788
BccI	CCATC	6 cut(s)	467, 497, 505, 1159, 1843, 2045
BceAI	ACGGC	4 cut(s)	335, 1178, 1544, 2102
BciT130I	CCWGG	5 cut(s)	836, 912, 1822, 1896, 2096
BciVI	GTATCC	1 cut(s)	1188
BclI	TGATCA	1 cut(s)	1269
BcoDI	GTCTC	2 cut(s)	552, 1051
BcuI	ACTAGT	1 cut(s)	2168
BfaI	CTAG	5 cut(s)	701, 1379, 2010, 2169, 2181
BfmI	CTRYAG	1 cut(s)	326
BfrI	CTTAAG	1 cut(s)	1334
BfuI	GTATCC	1 cut(s)	1188
BglI	GCCNNNNNGGC	1 cut(s)	2123
BglII	AGATCT	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	1344
Bme1390I	CCNGG	5 cut(s)	836, 912, 1822, 1896, 2096
Bme18I	GGWCC	2 cut(s)	745, 2227
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	745, 2227
BmiI	GGNNCC	3 cut(s)	508, 732, 746
BmrFI	CCNGG	5 cut(s)	836, 912, 1822, 1896, 2096
BmrI	ACTGGG	3 cut(s)	339, 587, 805
BmsI	GCATC	8 cut(s)	445, 818, 1194, 1372, 1769, 1880, 2134, 2211
BmuI	ACTGGG	3 cut(s)	339, 587, 805
BoxI	GACNNNNGTC	1 cut(s)	2247
BpiI	GAAGAC	3 cut(s)	192, 2078, 2171
BpmI	CTGGAG	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	1344
BpuEI	CTTGAG	1 cut(s)	898
Bsa29I	ATCGAT	1 cut(s)	924
BsaBI	GATNNNNATC	1 cut(s)	2373
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	236, 1894
BsaWI	WCCGGW	1 cut(s)	2075
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 741, 1003
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	6 cut(s)	345, 582, 667, 777, 811, 1166
Bse3DI	GCAATG	1 cut(s)	1602
Bse8I	GATNNNNATC	1 cut(s)	2373
BseBI	CCWGG	5 cut(s)	836, 912, 1822, 1896, 2096
BseCI	ATCGAT	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	236, 1894
BseGI	GGATG	4 cut(s)	964, 1209, 1854, 1871
BseJI	GATNNNNATC	1 cut(s)	2373
BseLI	CCNNNNNNNGG	3 cut(s)	503, 741, 1003
BseMI	GCAATG	1 cut(s)	1602
BseMII	CTCAG	6 cut(s)	219, 620, 1011, 1335, 1761, 2216
BseNI	ACTGG	6 cut(s)	345, 582, 667, 777, 811, 1166
BseRI	GAGGAG	6 cut(s)	25, 53, 173, 176, 2039, 2231
BseSI	GKGCMC	3 cut(s)	735, 1788, 1918
BseYI	CCCAGC	2 cut(s)	760, 1328
BsgI	GTGCAG	1 cut(s)	1281
BshFI	GGCC	2 cut(s)	1165, 1703
BshNI	GGYRCC	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	924
BsiHKAI	GWGCWC	3 cut(s)	293, 540, 1788
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	286, 431, 468, 2076
BslFI	GGGAC	4 cut(s)	217, 254, 326, 2172
BslI	CCNNNNNNNGG	3 cut(s)	503, 741, 1003
BsmAI	GTCTC	2 cut(s)	552, 1051
BsmFI	GGGAC	4 cut(s)	217, 254, 326, 2172
BsmI	GAATGC	2 cut(s)	22, 1864
BsnI	GGCC	2 cut(s)	1165, 1703
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	6 cut(s)	111, 293, 540, 735, 1788, 1918
Bsp1407I	TGTACA	2 cut(s)	2406, 2421
Bsp143I	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
Bsp1720I	GCTNAGC	1 cut(s)	1344
BspACI	CCGC	8 cut(s)	93, 152, 608, 637, 727, 735, 776, 1957
BspANI	GGCC	2 cut(s)	1165, 1703
BspCNI	CTCAG	6 cut(s)	220, 621, 1012, 1336, 1762, 2215
BspDI	ATCGAT	1 cut(s)	924
BspLI	GGNNCC	3 cut(s)	508, 732, 746
BspMAI	CTGCAG	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	1722
BspT107I	GGYRCC	1 cut(s)	730
BspTI	CTTAAG	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	1602
BsrFI	RCCGGY	1 cut(s)	467
BsrGI	TGTACA	2 cut(s)	2406, 2421
BsrI	ACTGG	6 cut(s)	345, 582, 667, 777, 811, 1166
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	236, 1894
BssMI	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	2 cut(s)	1443, 1494
Bst2BI	CACGAG	2 cut(s)	1443, 1494
Bst2UI	CCWGG	5 cut(s)	836, 912, 1822, 1896, 2096
Bst4CI	ACNGT	3 cut(s)	265, 1474, 2383
Bst6I	CTCTTC	2 cut(s)	1713, 1722
BstACI	GRCGYC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	1334
BstAPI	GCANNNNNTGC	1 cut(s)	2144
BstAUI	TGTACA	2 cut(s)	2406, 2421
BstC8I	GCNNGC	6 cut(s)	283, 613, 735, 1543, 1734, 2149
BstDEI	CTNAG	9 cut(s)	228, 629, 1020, 1344, 1662, 1739, 1770, 2202, 2390
BstDSI	CCRYGG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	4 cut(s)	964, 1209, 1854, 1871
BstKTI	GATC	9 cut(s)	61, 315, 338, 928, 964, 994, 1272, 1589, 1696
BstMAI	GTCTC	2 cut(s)	552, 1051
BstMBI	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
BstNI	CCWGG	5 cut(s)	836, 912, 1822, 1896, 2096
BstNSI	RCATGY	2 cut(s)	281, 1491
BstPAI	GACNNNNGTC	1 cut(s)	2247
BstSCI	CCNGG	5 cut(s)	834, 910, 1820, 1894, 2094
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	3 cut(s)	735, 1788, 1918
BstV2I	GAAGAC	3 cut(s)	192, 2078, 2171
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	924
BsuI	GTATCC	1 cut(s)	1188
BsuRI	GGCC	2 cut(s)	1165, 1703
BsuTUI	ATCGAT	1 cut(s)	924
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	4 cut(s)	964, 1209, 1854, 1871
BtsIMutI	CAGTG	3 cut(s)	352, 1285, 1918
Cac8I	GCNNGC	6 cut(s)	283, 613, 735, 1543, 1734, 2149
CaiI	CAGNNNCTG	3 cut(s)	831, 2147, 2230
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	745, 2227
ClaI	ATCGAT	1 cut(s)	924
CseI	GACGC	3 cut(s)	143, 924, 1364
CsiI	ACCWGGT	1 cut(s)	1820
Csp6I	GTAC	4 cut(s)	1530, 2333, 2407, 2422
CspCI	CAANNNNNGTGG	4 cut(s)	930, 965, 1416, 1451
CviAII	CATG	7 cut(s)	278, 518, 532, 1066, 1352, 1488, 2245
CviQI	GTAC	4 cut(s)	1530, 2333, 2407, 2422
DdeI	CTNAG	9 cut(s)	228, 629, 1020, 1344, 1662, 1739, 1770, 2202, 2390
DpnI	GATC	9 cut(s)	60, 314, 337, 927, 963, 993, 1271, 1588, 1695
DpnII	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
DraI	TTTAAA	2 cut(s)	1596, 1935
EaeI	YGGCCR	2 cut(s)	1163, 1701
Eam1104I	CTCTTC	2 cut(s)	1713, 1722
EarI	CTCTTC	2 cut(s)	1713, 1722
Ecl136II	GAGCTC	1 cut(s)	538
Eco24I	GRGCYC	2 cut(s)	111, 540
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	745, 2227
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	1110, 1947
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoO109I	RGGNCCY	2 cut(s)	745, 2227
EcoRI	GAATTC	1 cut(s)	2302
EcoRII	CCWGG	5 cut(s)	834, 910, 1820, 1894, 2094
EcoRV	GATATC	1 cut(s)	823
EcoT22I	ATGCAT	1 cut(s)	1489
EcoT38I	GRGCYC	2 cut(s)	111, 540
FaeI	CATG	7 cut(s)	281, 521, 535, 1069, 1355, 1491, 2248
FaqI	GGGAC	4 cut(s)	217, 254, 326, 2172
FatI	CATG	7 cut(s)	277, 517, 531, 1065, 1351, 1487, 2244
FauI	CCCGC	4 cut(s)	630, 720, 742, 1950
FbaI	TGATCA	1 cut(s)	1269
FokI	GGATG	4 cut(s)	971, 1216, 1858, 1861
FriOI	GRGCYC	2 cut(s)	111, 540
FspBI	CTAG	5 cut(s)	701, 1379, 2010, 2169, 2181
GsaI	CCCAGC	2 cut(s)	764, 1332
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	1165, 1703
HapII	CCGG	4 cut(s)	286, 431, 468, 2076
HgaI	GACGC	3 cut(s)	143, 924, 1364
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	7 cut(s)	281, 521, 535, 1069, 1355, 1491, 2248
HincII	GTYRAC	3 cut(s)	1099, 1414, 2092
HindII	GTYRAC	3 cut(s)	1099, 1414, 2092
HindIII	AAGCTT	1 cut(s)	1112
HpaII	CCGG	4 cut(s)	286, 431, 468, 2076
HphI	GGTGA	3 cut(s)	58, 482, 748
Hpy166II	GTNNAC	6 cut(s)	816, 1099, 1414, 1448, 1786, 2092
Hpy8I	GTNNAC	6 cut(s)	816, 1099, 1414, 1448, 1786, 2092
Hpy99I	CGWCG	6 cut(s)	137, 305, 365, 1203, 1995, 2109
HpyAV	CCTTC	4 cut(s)	1544, 1759, 2116, 2128
HpyCH4III	ACNGT	3 cut(s)	265, 1474, 2383
HpyF3I	CTNAG	9 cut(s)	228, 629, 1020, 1344, 1662, 1739, 1770, 2202, 2390
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	281, 521, 535, 1069, 1355, 1491, 2248
Ksp22I	TGATCA	1 cut(s)	1269
Kzo9I	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
LguI	GCTCTTC	1 cut(s)	1722
LmnI	GCTCC	5 cut(s)	288, 380, 535, 543, 1960
LweI	GCATC	8 cut(s)	445, 818, 1194, 1372, 1769, 1880, 2134, 2211
MabI	ACCWGGT	1 cut(s)	1820
MaeI	CTAG	5 cut(s)	701, 1379, 2010, 2169, 2181
MaeIII	GTNAC	8 cut(s)	116, 690, 1168, 1496, 1561, 1570, 1828, 2240
MalI	GATC	9 cut(s)	60, 314, 337, 927, 963, 993, 1271, 1588, 1695
MboI	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	6 cut(s)	111, 293, 540, 735, 1788, 1918
MlsI	TGGCCA	1 cut(s)	1703
MluNI	TGGCCA	1 cut(s)	1703
MlyI	GAGTC	4 cut(s)	239, 1642, 2257, 2289
MmeI	TCCRAC	5 cut(s)	156, 432, 823, 988, 2263
Mox20I	TGGCCA	1 cut(s)	1703
Mph1103I	ATGCAT	1 cut(s)	1489
MroXI	GAANNNNTTC	1 cut(s)	1227
MscI	TGGCCA	1 cut(s)	1703
MseI	TTAA	8 cut(s)	857, 1110, 1335, 1595, 1628, 1934, 2310, 2349
MslI	CAYNNNNRTG	4 cut(s)	363, 899, 1791, 2399
Msp20I	TGGCCA	1 cut(s)	1703
MspCI	CTTAAG	1 cut(s)	1334
MspI	CCGG	4 cut(s)	286, 431, 468, 2076
MspR9I	CCNGG	5 cut(s)	836, 912, 1822, 1896, 2096
Mva1269I	GAATGC	2 cut(s)	22, 1864
MvaI	CCWGG	5 cut(s)	836, 912, 1822, 1896, 2096
NdeII	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
NlaIII	CATG	7 cut(s)	281, 521, 535, 1069, 1355, 1491, 2248
NlaIV	GGNNCC	3 cut(s)	508, 732, 746
NmeAIII	GCCGAG	1 cut(s)	1121
NmuCI	GTSAC	5 cut(s)	116, 1168, 1496, 1570, 2240
NsiI	ATGCAT	1 cut(s)	1489
NspI	RCATGY	2 cut(s)	281, 1491
PaeR7I	CTCGAG	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	1722
PcsI	WCGNNNNNNNCGW	2 cut(s)	1204, 1987
PctI	GAATGC	2 cut(s)	22, 1864
PdmI	GAANNNNTTC	1 cut(s)	1227
PfeI	GAWTC	6 cut(s)	380, 392, 404, 796, 1024, 1036
PflMI	CCANNNNNTGG	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	910
PleI	GAGTC	4 cut(s)	238, 1641, 2256, 2288
PpsI	GAGTC	4 cut(s)	238, 1641, 2256, 2288
PpuMI	RGGWCCY	2 cut(s)	745, 2227
PshAI	GACNNNNGTC	1 cut(s)	2247
PshBI	ATTAAT	1 cut(s)	2349
PsiI	TTATAA	2 cut(s)	426, 1478
Psp124BI	GAGCTC	1 cut(s)	540
Psp5II	RGGWCCY	2 cut(s)	745, 2227
Psp6I	CCWGG	5 cut(s)	834, 910, 1820, 1894, 2094
PspFI	CCCAGC	2 cut(s)	760, 1328
PspGI	CCWGG	5 cut(s)	834, 910, 1820, 1894, 2094
PspN4I	GGNNCC	3 cut(s)	508, 732, 746
PspPI	GGNCC	2 cut(s)	745, 2227
PspPPI	RGGWCCY	2 cut(s)	745, 2227
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	3 cut(s)	831, 2147, 2230
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	4 cut(s)	1531, 2334, 2408, 2423
RsaNI	GTAC	4 cut(s)	1530, 2333, 2407, 2422
RseI	CAYNNNNRTG	4 cut(s)	363, 899, 1791, 2399
SacI	GAGCTC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	1722
SaqAI	TTAA	8 cut(s)	857, 1110, 1335, 1595, 1628, 1934, 2310, 2349
Sau3AI	GATC	9 cut(s)	58, 312, 335, 925, 961, 991, 1269, 1586, 1693
Sau96I	GGNCC	2 cut(s)	745, 2227
SchI	GAGTC	4 cut(s)	239, 1642, 2257, 2289
ScrFI	CCNGG	5 cut(s)	836, 912, 1822, 1896, 2096
SduI	GDGCHC	6 cut(s)	111, 293, 540, 735, 1788, 1918
SexAI	ACCWGGT	1 cut(s)	1820
SfaNI	GCATC	8 cut(s)	445, 818, 1194, 1372, 1769, 1880, 2134, 2211
SfcI	CTRYAG	1 cut(s)	326
Sfr274I	CTCGAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	745, 2227
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	4 cut(s)	363, 899, 1791, 2399
SmlI	CTYRAG	3 cut(s)	210, 877, 1334
SmoI	CTYRAG	3 cut(s)	210, 877, 1334
SpeI	ACTAGT	1 cut(s)	2168
SsiI	CCGC	8 cut(s)	93, 152, 608, 637, 727, 735, 776, 1957
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	5 cut(s)	701, 1379, 2010, 2169, 2181
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	5 cut(s)	834, 910, 1820, 1894, 2094
TaaI	ACNGT	3 cut(s)	265, 1474, 2383
TaqII	GACCGA	1 cut(s)	1599
TatI	WGTACW	2 cut(s)	2406, 2421
TauI	GCSGC	2 cut(s)	95, 611
TfiI	GAWTC	6 cut(s)	380, 392, 404, 796, 1024, 1036
Tru1I	TTAA	8 cut(s)	857, 1110, 1335, 1595, 1628, 1934, 2310, 2349
Tru9I	TTAA	8 cut(s)	857, 1110, 1335, 1595, 1628, 1934, 2310, 2349
TscAI	CASTG	3 cut(s)	352, 1285, 1918
TseFI	GTSAC	5 cut(s)	116, 1168, 1496, 1570, 2240
Tsp45I	GTSAC	5 cut(s)	116, 1168, 1496, 1570, 2240
TspGWI	ACGGA	3 cut(s)	289, 1193, 1216
TspRI	CASTG	3 cut(s)	352, 1285, 1918
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	1334
VneI	GTGCAC	1 cut(s)	1784
VpaK11BI	GGWCC	2 cut(s)	745, 2227
VspI	ATTAAT	1 cut(s)	2349
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	3 cut(s)	1797, 1972, 2302
XbaI	TCTAGA	2 cut(s)	700, 1378
XceI	RCATGY	2 cut(s)	281, 1491
XhoI	CTCGAG	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	1227
XspI	CTAG	5 cut(s)	701, 1379, 2010, 2169, 2181
Zsp2I	ATGCAT	1 cut(s)	1489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.