pycom16g00990
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013661
Physical Location & Seq
Reverse (-)
592426 .. 595484
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGGATGTCAAAGGGCTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTATAGAAGCATGAGAGGCGATCCGATTATAAGACAAGATAGGGTGCAAACAAGAAAACTACATTCATTTGAAGAGGCTGAGGATGATGGGTGTGTTGAAGAAGTAAATGGTTTGAGCTTTTACCCATCTTCCAAACCCACTAGAGAATCGGATTCCCAGGTCATCTGCAATCCCCGCCGTTCAAAAAGAGCTAGAACCGAGACGATGGGTTCAAACATCTCAGAGGGTTTGCAGCAGCAGCAATGCGGCAAAGGAGGAATATATGAGACTCTGTCAAATCCGTACTCTTTTGATGATTACGTTCTGGCATTGGGAATAAAGGAGGACCCTCACCCATCAGCCTTCAAAATTGCTTTGCAAGAATCTGATTTCTTGAAGGTTGCTACCTTACCAGAGGCAGGAGGAGCACATGTCGAAGACCATCATGAAGCTGGCCATTGTGAACTATCACTGTCACTCTCATTACACCAGCCCTCCTCCCACAAGAGTAATGCTTCTTCAAGTGACTTCAGTGGGGCAATCTCATCGTCATACTCTAGGCCTAACTACAAAGACTTGCTCTCTGCGGTACCTGATGCTGCTGCTGTAAAAAGAAAAATCATCTGTTTTAGGCTAGTAGATTTCTACCCTCACTCACCCCACATCTTGTTAGTTCTTTTACTGTTGTTGTAG

Protein Analysis

241

Amino Acids

26.61

Weight (kDa)

6.3

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc65I GGTACC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 3 cut(s) 226, 297, 617
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 544
AfaI GTAC 2 cut(s) 335, 621
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 7 cut(s) 122, 149, 234, 264, 397, 427, 552
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 168, 242, 482
AluI AGCT 3 cut(s) 168, 242, 482
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 245, 311
AlwI GGATC 1 cut(s) 65
AoxI GGCC 2 cut(s) 484, 590
ApeKI GCWGC 5 cut(s) 283, 286, 289, 629, 632
Asp718I GGTACC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 10, 374, 678
AvaII GGWCC 1 cut(s) 376
BalI TGGCCA 1 cut(s) 486
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 532, 564
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 5 cut(s) 295, 298, 301, 616, 619
BccI CCATC 6 cut(s) 48, 131, 184, 250, 394, 480
BceAI ACGGC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 245, 311
BfaI CTAG 4 cut(s) 192, 243, 588, 665
BisI GCNGC 6 cut(s) 284, 287, 290, 298, 630, 633
BlsI GCNGC 6 cut(s) 285, 288, 291, 299, 631, 634
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 378, 621
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 10, 139
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 120, 285
BseRI GAGGAG 2 cut(s) 468, 517
BseXI GCAGC 5 cut(s) 295, 298, 301, 616, 619
BshFI GGCC 2 cut(s) 486, 592
BshNI GGYRCC 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 245, 311
BsmBI CGTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 486, 592
Bsp1286I GDGCHC 2 cut(s) 18, 460
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 3 cut(s) 226, 297, 617
BspANI GGCC 2 cut(s) 486, 592
BspCNI CTCAG 2 cut(s) 121, 284
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 378, 621
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 504, 714
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 2 cut(s) 129, 271
BstF5I GGATG 2 cut(s) 10, 139
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 245, 311
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 66, 225, 289, 455
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 295, 298, 301, 616, 619
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 2 cut(s) 486, 592
BtsCI GGATG 2 cut(s) 10, 139
BtsIMutI CAGTG 2 cut(s) 500, 568
Cac8I GCNNGC 1 cut(s) 484
CciI TCATGA 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 334, 620
CviAII CATG 4 cut(s) 29, 61, 461, 476
CviQI GTAC 2 cut(s) 334, 620
DdeI CTNAG 2 cut(s) 129, 271
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 32, 64, 464, 479
FaiI YATR 9 cut(s) 30, 54, 62, 80, 313, 315, 462, 477, 583
FatI CATG 4 cut(s) 28, 60, 460, 475
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 6 cut(s) 284, 287, 290, 298, 630, 633
FokI GGATG 2 cut(s) 17, 146
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 6 cut(s) 284, 287, 290, 298, 630, 633
FspBI CTAG 4 cut(s) 192, 243, 588, 665
GluI GCNGC 6 cut(s) 284, 287, 290, 298, 630, 633
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 486, 592
Hin1II CATG 4 cut(s) 32, 64, 464, 479
HinfI GANTC 4 cut(s) 197, 203, 319, 413
HphI GGTGA 3 cut(s) 10, 374, 678
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 4 cut(s) 75, 202, 274, 418
Hpy188III TCNNGA 3 cut(s) 46, 424, 476
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 403, 421
HpyCH4III ACNGT 2 cut(s) 504, 714
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 4 cut(s) 97, 219, 283, 409
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 225, 289, 455
HpyF3I CTNAG 2 cut(s) 129, 271
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 4 cut(s) 32, 64, 464, 479
KpnI GGTACC 1 cut(s) 623
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 455
LpnPI CCDG 9 cut(s) 59, 194, 221, 341, 435, 456, 468, 533, 636
Lsp1109I GCAGC 5 cut(s) 295, 298, 301, 616, 619
LweI GCATC 1 cut(s) 616
MaeI CTAG 4 cut(s) 192, 243, 588, 665
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 504, 554
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 5 cut(s) 134, 161, 171, 479, 540
MhlI GDGCHC 2 cut(s) 18, 460
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 1 cut(s) 399
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 1 cut(s) 313
Mox20I TGGCCA 1 cut(s) 486
MscI TGGCCA 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 66, 225, 289, 455
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 32, 64, 464, 479
NlaIV GGNNCC 2 cut(s) 378, 621
NmuCI GTSAC 2 cut(s) 504, 554
NspI RCATGY 1 cut(s) 464
PagI TCATGA 1 cut(s) 475
PceI AGGCCT 1 cut(s) 592
PciI ACATGT 1 cut(s) 460
PfeI GAWTC 3 cut(s) 197, 203, 413
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 6 cut(s) 285, 288, 291, 299, 631, 634
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 376
PscI ACATGT 1 cut(s) 460
PsiI TTATAA 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 378, 621
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 2 cut(s) 335, 621
RsaNI GTAC 2 cut(s) 334, 620
SatI GCNGC 6 cut(s) 284, 287, 290, 298, 630, 633
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 18, 460
SetI ASST 8 cut(s) 170, 213, 244, 354, 432, 440, 484, 625
SfaNI GCATC 1 cut(s) 616
SinI GGWCC 1 cut(s) 376
Sse9I AATT 1 cut(s) 399
SseBI AGGCCT 1 cut(s) 592
SsiI CCGC 3 cut(s) 226, 297, 617
SspMI CTAG 4 cut(s) 192, 243, 588, 665
StuI AGGCCT 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 504, 714
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 465
TasI AATT 1 cut(s) 399
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 3 cut(s) 197, 203, 413
TscAI CASTG 2 cut(s) 507, 568
TseFI GTSAC 2 cut(s) 504, 554
TseI GCWGC 5 cut(s) 283, 286, 289, 629, 632
Tsp45I GTSAC 2 cut(s) 504, 554
TspDTI ATGAA 2 cut(s) 105, 492
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 2 cut(s) 507, 568
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 376
XceI RCATGY 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XspI CTAG 4 cut(s) 192, 243, 588, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.