Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Reverse (-)

749535 .. 750602

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTGATGGAAACGAATTGTAGATGGTCTTCGAAAAGAGTTGAGATGGCGACTCGGGTGATTGTTGAGGCTTTGAAGAGGGCTCAGTTTAGGTGGGTATCTAGACAAGAAGTTAGGGATGCCGCCCGTGCCTATGTAGGCGACACAGGGTTGCTAGATTTTGTGTTGAAGTCACTAGGAAACCACATTGTAGGAAATTACTTAGTTCGTCGCACGTTGAATCCAGTGACTAAAGTTCTTGAGTACTGCTTAGAAGACATCTCCAATCATGCTTCCCCTAATCATCGGGACGGTTTGCTCATGCACAGTCCGAAGGCGAAGGCTGCCTGGTACAAGCTTTCGAAGTTTCGGTTAATGAAGGATATGTTCTACATGTACAAGTACGTTCTCAAGGACCAGAAGATGAGCAATGCCGGGATATTTTCGGCCATACCGATGGCTGTACGGATCATTCTCAATTCCAAGTACCTCGTGAAGGATTACTGCAGCGAGGTGGTGCCTATGAAAGTTGAATATTTAAGCATGGATGGAGAATCAAACATCTACTGCACAATAACACTAAAAAACAATTCCGAAGAAGATGACGAGGATAATAGTAAGAGTATTAGAAACAACAACAATGCAATAATATTGCAACCCTACGAGTGTGTGACGTTAAAAAACAATGCTACATTTGATGATTTGAAGCAAGAAGTGGAGAGGAATTTCAAGGAGATCTACTGGGGGCTGAGGGGATTTGTGGTGGACTCAATTGCAAATCTCAACAATGCGAAGGGGACAGATTTGGTTTTTGGCATGGTTGAGGTGGGTCAAAAGATTGTGCTCGAGGGTAGGAGTAGCAAAAGGATGGGTGGAGTTAGTGAGATGTATGAATGTGGAGCAGTTTACTATGTCGTGGACTGTCCCTGTGGAGCTAAGGAAGACGATGGGGAAAGAATGGTGTCGTGTGACATTTGTGAAGTTAGGCAGCATACGCTTTGTGTTCGAATTCCGGACAGCGAACAAGTTCCTCACATATTTCTCTGCAATCGATGTGAAAGAGAAATCATACTTTTGCCTTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030198 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0042221 GO:0043062 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0044706 GO:0045229 GO:0045893 GO:0045935 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0080090 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

356

Amino Acids

40.65

Weight (kDa)

6.98

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	8 - 86	1.1e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	177 - 278	1.6e-29	At1g33420-like, ubiquitin-like domain
PHD	PF00628	301 - 345	3.3e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AccIII	TCCGGA	1 cut(s)	991
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	703, 987
AfaI	GTAC	6 cut(s)	245, 332, 377, 383, 444, 467
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	6 cut(s)	76, 169, 220, 512, 685, 709
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	337, 914
AluI	AGCT	2 cut(s)	337, 914
Alw21I	GWGCWC	1 cut(s)	825
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	54, 824
Aor13HI	TCCGGA	1 cut(s)	991
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	323, 486, 967
ApoI	RAATTY	2 cut(s)	703, 987
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	3 cut(s)	32, 341, 985
AvaI	CYCGRG	2 cut(s)	54, 824
AvaII	GGWCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	3 cut(s)	21, 261, 927
Bbv12I	GWGCWC	1 cut(s)	825
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	310, 498, 979
BccI	CCATC	6 cut(s)	18, 40, 430, 521, 841, 920
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	415
BfaI	CTAG	3 cut(s)	102, 155, 176
BfmI	CTRYAG	1 cut(s)	484
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	4 cut(s)	123, 324, 487, 968
BlsI	GCNGC	4 cut(s)	124, 325, 488, 969
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	328, 415
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	2 cut(s)	54, 824
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	328, 415
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	3 cut(s)	21, 261, 927
Bpu10I	CCTNAGC	2 cut(s)	728, 915
Bpu14I	TTCGAA	3 cut(s)	32, 341, 985
BpuEI	CTTGAG	2 cut(s)	260, 374
BpuMI	CCSGG	1 cut(s)	415
Bsa29I	ATCGAT	1 cut(s)	1030
BsaWI	WCCGGW	1 cut(s)	991
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	224, 725
Bse3DI	GCAATG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	991
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	1030
BseGI	GGATG	3 cut(s)	124, 532, 852
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	98, 719
BseNI	ACTGG	2 cut(s)	224, 725
BseXI	GCAGC	3 cut(s)	310, 498, 979
BsgI	GTGCAG	1 cut(s)	532
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	496
BshVI	ATCGAT	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	2 cut(s)	54, 824
BsiSI	CCGG	2 cut(s)	414, 992
BslFI	GGGAC	3 cut(s)	302, 790, 888
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmFI	GGGAC	3 cut(s)	302, 790, 888
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	2 cut(s)	54, 824
Bsp119I	TTCGAA	3 cut(s)	32, 341, 985
Bsp1286I	GDGCHC	2 cut(s)	85, 825
Bsp13I	TCCGGA	1 cut(s)	991
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	447, 714
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	97, 720
BspDI	ATCGAT	1 cut(s)	1030
BspEI	TCCGGA	1 cut(s)	991
BspLI	GGNNCC	1 cut(s)	498
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	1 cut(s)	455
BspT104I	TTCGAA	3 cut(s)	32, 341, 985
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	224, 725
BssMI	GATC	2 cut(s)	447, 714
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	293, 308, 902
Bst6I	CTCTTC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	375
BstBI	TTCGAA	3 cut(s)	32, 341, 985
BstDEI	CTNAG	5 cut(s)	84, 202, 250, 728, 915
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	124, 532, 852
BstKTI	GATC	2 cut(s)	450, 717
BstMBI	GATC	2 cut(s)	447, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 323, 973
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	326, 413
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	3 cut(s)	310, 498, 979
BstV2I	GAAGAC	3 cut(s)	21, 261, 927
BstX2I	RGATCY	1 cut(s)	714
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	714
Bsu15I	ATCGAT	1 cut(s)	1030
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	1030
BtsCI	GGATG	3 cut(s)	124, 532, 852
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	1030
Csp6I	GTAC	6 cut(s)	244, 331, 376, 382, 443, 466
CviAII	CATG	5 cut(s)	269, 301, 373, 523, 796
CviJI	RGCY	8 cut(s)	71, 83, 323, 337, 428, 440, 727, 914
CviKI_1	RGCY	8 cut(s)	71, 83, 323, 337, 428, 440, 727, 914
CviQI	GTAC	6 cut(s)	244, 331, 376, 382, 443, 466
DdeI	CTNAG	5 cut(s)	84, 202, 250, 728, 915
DpnI	GATC	2 cut(s)	449, 716
DpnII	GATC	2 cut(s)	447, 714
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	394
Eco88I	CYCGRG	2 cut(s)	54, 824
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	987
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	5 cut(s)	272, 304, 376, 526, 799
FaqI	GGGAC	3 cut(s)	302, 790, 888
FatI	CATG	5 cut(s)	268, 300, 372, 522, 795
Fnu4HI	GCNGC	4 cut(s)	123, 324, 487, 968
FokI	GGATG	3 cut(s)	131, 539, 859
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	4 cut(s)	123, 324, 487, 968
FspBI	CTAG	3 cut(s)	102, 155, 176
GluI	GCNGC	4 cut(s)	123, 324, 487, 968
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	414, 992
Hin1II	CATG	5 cut(s)	272, 304, 376, 526, 799
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	4 cut(s)	52, 220, 533, 746
HpaII	CCGG	2 cut(s)	414, 992
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	745, 886, 898
Hpy188I	TCNGA	2 cut(s)	312, 574
Hpy188III	TCNNGA	5 cut(s)	102, 239, 287, 472, 992
Hpy8I	GTNNAC	3 cut(s)	745, 886, 898
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	6 cut(s)	307, 313, 352, 469, 766, 1068
HpyCH4III	ACNGT	3 cut(s)	293, 308, 902
HpyCH4IV	ACGT	3 cut(s)	215, 384, 653
HpyCH4V	TGCA	7 cut(s)	304, 486, 549, 623, 634, 755, 1026
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 323, 973
HpyF3I	CTNAG	5 cut(s)	84, 202, 250, 728, 915
HpySE526I	ACGT	3 cut(s)	215, 384, 653
Hsp92II	CATG	5 cut(s)	272, 304, 376, 526, 799
Kpn2I	TCCGGA	1 cut(s)	991
Kzo9I	GATC	2 cut(s)	447, 714
LmnI	GCTCC	2 cut(s)	878, 911
LpnPI	CCDG	9 cut(s)	132, 237, 313, 340, 410, 427, 706, 919, 1005
Lsp1109I	GCAGC	3 cut(s)	310, 498, 979
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	102, 155, 176
MaeII	ACGT	3 cut(s)	215, 384, 653
MaeIII	GTNAC	4 cut(s)	171, 226, 649, 947
MalI	GATC	2 cut(s)	449, 716
MboI	GATC	2 cut(s)	447, 714
MboII	GAAGA	7 cut(s)	21, 88, 266, 412, 587, 590, 932
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	85, 825
MluCI	AATT	7 cut(s)	16, 196, 457, 568, 703, 750, 987
MlyI	GAGTC	2 cut(s)	46, 740
MroI	TCCGGA	1 cut(s)	991
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	3 cut(s)	353, 518, 656
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	2 cut(s)	414, 992
MspR9I	CCNGG	2 cut(s)	328, 415
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	128, 323, 973
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	447, 714
NlaIII	CATG	5 cut(s)	272, 304, 376, 526, 799
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	4 cut(s)	171, 226, 649, 947
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	3 cut(s)	32, 341, 985
PaeR7I	CTCGAG	1 cut(s)	824
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	2 cut(s)	220, 533
PkrI	GCNGC	4 cut(s)	124, 325, 488, 969
PleI	GAGTC	2 cut(s)	46, 740
PpsI	GAGTC	2 cut(s)	46, 740
PscI	ACATGT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	394
PspXI	VCTCGAGB	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	714
RsaI	GTAC	6 cut(s)	245, 332, 377, 383, 444, 467
RsaNI	GTAC	6 cut(s)	244, 331, 376, 382, 443, 466
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	3 cut(s)	353, 518, 656
SatI	GCNGC	4 cut(s)	123, 324, 487, 968
Sau3AI	GATC	2 cut(s)	447, 714
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	2 cut(s)	46, 740
ScrFI	CCNGG	2 cut(s)	328, 415
SduI	GDGCHC	2 cut(s)	85, 825
SetI	ASST	9 cut(s)	95, 218, 339, 387, 471, 495, 656, 807, 916
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	824
SfuI	TTCGAA	3 cut(s)	32, 341, 985
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	239, 389, 824
SmoI	CTYRAG	3 cut(s)	239, 389, 824
Sse9I	AATT	7 cut(s)	16, 196, 457, 568, 703, 750, 987
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	2 cut(s)	515, 630
SspMI	CTAG	3 cut(s)	102, 155, 176
StyD4I	CCNGG	2 cut(s)	326, 413
TaaI	ACNGT	3 cut(s)	293, 308, 902
TaiI	ACGT	3 cut(s)	218, 387, 656
TaqI	TCGA	5 cut(s)	32, 341, 825, 985, 1030
TasI	AATT	7 cut(s)	16, 196, 457, 568, 703, 750, 987
TatI	WGTACW	2 cut(s)	243, 375
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	220, 533
Tru1I	TTAA	3 cut(s)	353, 518, 656
Tru9I	TTAA	3 cut(s)	353, 518, 656
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	4 cut(s)	171, 226, 649, 947
TseI	GCWGC	3 cut(s)	323, 486, 967
Tsp45I	GTSAC	4 cut(s)	171, 226, 649, 947
TspDTI	ATGAA	3 cut(s)	371, 518, 885
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	394
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	2 cut(s)	703, 987
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	3 cut(s)	102, 155, 176
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.