pycom16g01510

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
931248 .. 932520
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGCAAGTAAAAGGCGTGCAGGTTGAGGAGCTGTATTCATTGGACCTTGATTCTCTGAACAATCTGAGGCCAGTGTATGGTTTAATTTTCCTATTCAAATGGCGCCCAGGGGATAAGGATGACCGCCTTGTAATTAAGGATCCAAATCCTAATTTGTTTTTCGCAAGCCAGGTTATTAATAATGCATGTGCAACCCAAGCAATCTTGTCTATCCTCTTGAACTGTCCGGACGTTGACATTGGTCCTGAACTGTCGAAACTGAAAGAATTTACGAAGAACTTTCCACCTGAACTGAAAGGATTGGCAATAAACAATAGTGAAGCTATCCGTGCAGCTCATAATAGTTTTGCCAGGCCTGAGCCGTTTGTTTCTGATGAGAAGAAGGTAGCTGACAAAGATGATGATGTCTACCATTTTATAAGCTACTTGCCTGTGGATGGAGTCCTGTATGAGCTTGATGGACTGAAGGAGGGGCCCATTAGCCTTGGACAGTGCCCCAGCGGGCAAGGTGACATGGAATGGCTGCAGATGGTGCAACCTGTAATCCAGGAACGCATCGAAAGGTATTCCAAAAGTGAGATAAGGTTCAATCTCTTGGCCATTATCAAGAACAGGAAGGAGATGTATACTGCTGAGCTCAAGGAACTGCAAAAGAAGAGGGAGCGTATTTTGCAGCAGCTGTCTGCCTTACAGCAAGAGAGAGCAGCCGACGGGAGCAAGTTTGAAGCGCTGAACAAAGCTCTTTCGGAAATCAATGCTGGGATCGAGGGTGCCACCGAGAAGATCTTGATGGAAGAAGAGAAATTTAAGAAGTGGAGAACAGAGAACATTCGCAGGAAGCACAACTACATTCCATTTCTGTTTAACTTCCTCAAGATTCTTGCCGAGAAGAAGCAGTTGAAGCCTCTTATTGAGAAGGCGAAGCAGAAGGCAGGCAACACCAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

36.14

Weight (kDa)

8.22

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C12 PF01088 2 - 187 6e-55 Ubiquitin carboxyl-terminal hydrolase, family 1
UCH_C PF18031 256 - 300 1e-19 Ubiquitin carboxyl-terminal hydrolases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65650 AT5G16310
fragaria_vesca FvH4_4g33330 FvH4_4g33330
malus_domestica MD13G1018500.v1.1 MD16G1016200.v1.1
prunus_persica Prupe.1G335400_v2.0.a1 Prupe.1G335400_v2.0.a1
pyrus_communis pycom13g01570 pycom16g01510
rosa_chinensis RchiOBHm_Chr4g0442561
rosa_laevigata RLG00000006002
rosa_multiflora Rmu_ssc0000204.1_g000045
rosa_roxburghii Rroxscaffold_5G00383370
rosa_rugosa Rorug04G0341200
rosa_samantha Rh4AG393600
rosa_wichuraiana Rw4G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 10
AccB1I GGYRCC 2 cut(s) 102, 770
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 2 cut(s) 408, 626
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 2 cut(s) 124, 501
AclWI GGATC 3 cut(s) 134, 147, 770
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 266, 803
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 2 cut(s) 77, 437
AgsI TTSAA 5 cut(s) 97, 220, 589, 725, 901
AjnI CCWGG 4 cut(s) 106, 168, 350, 546
AluBI AGCT 9 cut(s) 31, 323, 335, 389, 423, 454, 637, 679, 740
AluI AGCT 9 cut(s) 31, 323, 335, 389, 423, 454, 637, 679, 740
Alw21I GWGCWC 1 cut(s) 639
AlwI GGATC 3 cut(s) 134, 147, 770
AlwNI CAGNNNCTG 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 226
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 4 cut(s) 68, 353, 473, 597
ApaI GGGCCC 1 cut(s) 477
ApeKI GCWGC 5 cut(s) 332, 523, 673, 676, 704
ApoI RAATTY 2 cut(s) 266, 803
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 2 cut(s) 105, 730
AspS9I GGNCC 4 cut(s) 43, 242, 473, 474
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 2 cut(s) 43, 242
BaeGI GKGCMC 2 cut(s) 477, 497
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 102, 770
BanII GRGCYC 2 cut(s) 477, 639
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 344, 510, 685, 688, 716
BccI CCATC 4 cut(s) 431, 452, 523, 784
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 4 cut(s) 108, 170, 352, 548
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 2 cut(s) 106, 731
BfuAI ACCTGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 783
BisI GCNGC 5 cut(s) 333, 524, 674, 677, 705
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 5 cut(s) 334, 525, 675, 678, 706
Bme1390I CCNGG 4 cut(s) 108, 170, 352, 548
Bme18I GGWCC 2 cut(s) 43, 242
BmgT120I GGNCC 4 cut(s) 43, 242, 473, 474
BmiI GGNNCC 5 cut(s) 104, 141, 474, 475, 772
BmrFI CCNGG 4 cut(s) 108, 170, 352, 548
BmsI GCATC 1 cut(s) 564
BoxI GACNNNNGTC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 623, 857
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 106, 107, 484
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 437
Bse1I ACTGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 4 cut(s) 108, 170, 352, 548
BseDI CCNNGG 3 cut(s) 106, 107, 484
BseGI GGATG 2 cut(s) 124, 442
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 77, 437
BseMII CTCAG 3 cut(s) 56, 348, 624
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 477, 497
BseXI GCAGC 5 cut(s) 344, 510, 685, 688, 716
BseYI CCCAGC 2 cut(s) 497, 758
BsgI GTGCAG 2 cut(s) 38, 351
BshFI GGCC 4 cut(s) 70, 355, 475, 599
BshNI GGYRCC 2 cut(s) 102, 770
BsiHKAI GWGCWC 1 cut(s) 639
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 77, 437
BsnI GGCC 4 cut(s) 70, 355, 475, 599
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 477, 497, 639
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 139, 762, 783
Bsp1720I GCTNAGC 1 cut(s) 633
BspACI CCGC 2 cut(s) 124, 501
BspANI GGCC 4 cut(s) 70, 355, 475, 599
BspCNI CTCAG 3 cut(s) 57, 349, 625
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 5 cut(s) 104, 141, 474, 475, 772
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 3 cut(s) 134, 147, 770
BspT107I GGYRCC 2 cut(s) 102, 770
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 106, 107, 484
BssMI GATC 3 cut(s) 139, 762, 783
BssNAI GTATAC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 484
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 108, 170, 352, 548
Bst4CI ACNGT 3 cut(s) 224, 252, 492
Bst6I CTCTTC 2 cut(s) 650, 792
BstACI GRCGYC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 17, 166, 503, 934
BstDEI CTNAG 3 cut(s) 65, 357, 633
BstF5I GGATG 2 cut(s) 124, 442
BstH2I RGCGCY 2 cut(s) 106, 731
BstHHI GCGC 2 cut(s) 105, 730
BstKTI GATC 3 cut(s) 142, 765, 786
BstMBI GATC 3 cut(s) 139, 762, 783
BstMWI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
BstNI CCWGG 4 cut(s) 108, 170, 352, 548
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 106, 168, 350, 546
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 2 cut(s) 477, 497
BstV1I GCAGC 5 cut(s) 344, 510, 685, 688, 716
BstX2I RGATCY 2 cut(s) 139, 783
BstYI RGATCY 2 cut(s) 139, 783
BstZ17I GTATAC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 70, 355, 475, 599
BtsCI GGATG 2 cut(s) 124, 442
BtsIMutI CAGTG 2 cut(s) 78, 497
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 17, 166, 503, 934
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 2 cut(s) 105, 730
Cfr13I GGNCC 4 cut(s) 43, 242, 473, 474
CviAII CATG 2 cut(s) 186, 514
DdeI CTNAG 3 cut(s) 65, 357, 633
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 141, 764, 785
DpnII GATC 3 cut(s) 139, 762, 783
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 650, 792
EarI CTCTTC 2 cut(s) 650, 792
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 484
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 477, 639
Eco47I GGWCC 2 cut(s) 43, 242
Eco47III AGCGCT 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 4 cut(s) 106, 168, 350, 546
EcoT14I CCWWGG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 477, 639
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 189, 517
FaiI YATR 7 cut(s) 78, 187, 339, 419, 450, 515, 627
FatI CATG 2 cut(s) 185, 513
FauI CCCGC 1 cut(s) 494
FblI GTMKAC 2 cut(s) 408, 626
Fnu4HI GCNGC 5 cut(s) 333, 524, 674, 677, 705
FokI GGATG 2 cut(s) 131, 449
FriOI GRGCYC 2 cut(s) 477, 639
Fsp4HI GCNGC 5 cut(s) 333, 524, 674, 677, 705
GlaI GCGC 2 cut(s) 104, 729
GluI GCNGC 5 cut(s) 333, 524, 674, 677, 705
GsaI CCCAGC 2 cut(s) 501, 762
HaeII RGCGCY 2 cut(s) 106, 731
HaeIII GGCC 4 cut(s) 70, 355, 475, 599
HapII CCGG 1 cut(s) 227
HhaI GCGC 2 cut(s) 105, 730
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 2 cut(s) 189, 517
Hin6I GCGC 2 cut(s) 103, 728
HinP1I GCGC 2 cut(s) 103, 728
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 50, 441, 877
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 3 cut(s) 235, 409, 627
Hpy188I TCNGA 4 cut(s) 57, 66, 373, 748
Hpy188III TCNNGA 6 cut(s) 217, 227, 245, 607, 787, 874
Hpy8I GTNNAC 3 cut(s) 235, 409, 627
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 5 cut(s) 376, 460, 610, 910, 922
HpyCH4III ACNGT 3 cut(s) 224, 252, 492
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 9 cut(s) 4, 19, 185, 191, 332, 526, 535, 649, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
HpyF3I CTNAG 3 cut(s) 65, 357, 633
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 2 cut(s) 189, 517
HspAI GCGC 2 cut(s) 103, 728
KasI GGCGCC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 139, 762, 783
LmnI GCTCC 3 cut(s) 28, 661, 714
Lsp1109I GCAGC 5 cut(s) 344, 510, 685, 688, 716
LweI GCATC 1 cut(s) 564
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 141, 764, 785
MboI GATC 3 cut(s) 139, 762, 783
MboII GAAGA 7 cut(s) 286, 391, 667, 793, 806, 809, 901
MflI RGATCY 2 cut(s) 139, 783
MhlI GDGCHC 3 cut(s) 477, 497, 639
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 5 cut(s) 84, 132, 151, 266, 803
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 8 cut(s) 19, 60, 224, 463, 651, 760, 881, 915
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 187
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 599
MseI TTAA 5 cut(s) 83, 135, 177, 807, 864
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 501, 679
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 4 cut(s) 108, 170, 352, 548
MvaI CCWGG 4 cut(s) 108, 170, 352, 548
MwoI GCNNNNNNNGC 5 cut(s) 197, 329, 532, 670, 901
NarI GGCGCC 1 cut(s) 103
NdeII GATC 3 cut(s) 139, 762, 783
NlaIII CATG 2 cut(s) 189, 517
NlaIV GGNNCC 5 cut(s) 104, 141, 474, 475, 772
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 189
PasI CCCWGGG 1 cut(s) 107
PceI AGGCCT 1 cut(s) 355
PfeI GAWTC 2 cut(s) 50, 877
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 5 cut(s) 334, 525, 675, 678, 706
PleI GAGTC 1 cut(s) 449
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 240
PshBI ATTAAT 1 cut(s) 177
PsiI TTATAA 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 106, 168, 350, 546
PspFI CCCAGC 2 cut(s) 497, 758
PspGI CCWGG 4 cut(s) 106, 168, 350, 546
PspN4I GGNNCC 5 cut(s) 104, 141, 474, 475, 772
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 4 cut(s) 43, 242, 473, 474
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 139, 783
PvuII CAGCTG 1 cut(s) 679
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 5 cut(s) 83, 135, 177, 807, 864
SatI GCNGC 5 cut(s) 333, 524, 674, 677, 705
Sau3AI GATC 3 cut(s) 139, 762, 783
Sau96I GGNCC 4 cut(s) 43, 242, 473, 474
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 4 cut(s) 108, 170, 352, 548
SduI GDGCHC 3 cut(s) 477, 497, 639
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 524
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 2 cut(s) 43, 242
SmlI CTYRAG 2 cut(s) 638, 872
SmoI CTYRAG 2 cut(s) 638, 872
Sse9I AATT 5 cut(s) 84, 132, 151, 266, 803
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 124, 501
SspDI GGCGCC 1 cut(s) 102
SstI GAGCTC 1 cut(s) 639
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 4 cut(s) 106, 168, 350, 546
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 224, 252, 492
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 254, 558, 765
TasI AATT 5 cut(s) 84, 132, 151, 266, 803
TfiI GAWTC 2 cut(s) 50, 877
Tru1I TTAA 5 cut(s) 83, 135, 177, 807, 864
Tru9I TTAA 5 cut(s) 83, 135, 177, 807, 864
TscAI CASTG 2 cut(s) 78, 497
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 5 cut(s) 332, 523, 673, 676, 704
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 78, 497
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 43, 242
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 2 cut(s) 266, 803
XceI RCATGY 1 cut(s) 189
XmiI GTMKAC 2 cut(s) 408, 626
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.