pycom16g02040

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011800
Physical Location & Seq
Forward (+)
1281279 .. 1281915
637 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
ATGACACGCACACGTCAGTATCCGCCGCCACTGCATACAGACCCGTCCATGGCTTCCACCACAGCCGATGGCAACTGCGGCAACGTCAAGATGTGGGAAGACGAATCCCAGCGAGTCGATGGCGGGATGGACGAGCTTCTGGCGATGTTGGGGTACAAGGTTCGGTCTTCGGACGTGGCGGATAATTCTCAGAAGCTTGAGCATCTTGAAGAATTCACTGGTTGTGTTCAGGAAGATGGACTCTCTCTGCTCGCTTCCGACACCGTTCACTATAACCCGTCGAATCTGTCGACGTGGGTCGAGAGCATGATGTCGGAGATAAACGTCCCGCCTTCTAATTTCGATCCTTTAACGGGCGGCGTTGTCGCCGGTATACAGCCTAATCAGCAGCAAGTCCAGCTCGTCGACGACGCGTTTTTAGCTTCGGAGAAGTCGTCCATCTCCACCGTCGATTTCCAGGGTCAGCAGAAGAGCAACCCATTAGCGCATCACCTCTCCAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

169

Amino Acids

18.35

Weight (kDa)

4.5

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DELLA PF12041 44 - 111 3.4e-30 Transcriptional regulator DELLA protein N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14920 AT2G01570
fragaria_vesca FvH4_4g34110
malus_domestica MD13G1022100.v1.1 MD16G1023300.v1.1
prunus_persica Prupe.1G329600_v2.0.a1
pyrus_communis pycom13g02070 pycom16g02040 pycom16g02050
rosa_chinensis RchiOBHm_Chr4g0443621
rosa_laevigata RLG00000005909
rosa_multiflora Rmu_sc0001118.1_g000014
rosa_roxburghii Rroxscaffold_5G00384170
rosa_samantha Rh4AG403600 Rh4AG405600 Rh4BG416600 Rh4CG431100 Rh4DG412200
rosa_wichuraiana Rw4G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 290, 373, 405
AccII CGCG 1 cut(s) 413
AciI CCGC 7 cut(s) 23, 26, 78, 123, 179, 329, 357
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 49, 353
AflIII ACRYGT 2 cut(s) 11, 411
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 3 cut(s) 14, 175, 294
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 4 cut(s) 136, 196, 400, 422
AluI AGCT 4 cut(s) 136, 196, 400, 422
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 482
BaeI ACNNNNGTAYC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 105, 159
BbvI GCAGC 1 cut(s) 400
BccI CCATC 5 cut(s) 62, 113, 121, 230, 446
BciT130I CCWGG 1 cut(s) 458
BciVI GTATCC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 30
BisI GCNGC 4 cut(s) 26, 79, 358, 389
BlsI GCNGC 4 cut(s) 27, 80, 359, 390
Bme1390I CCNGG 1 cut(s) 458
BmgBI CACGTC 3 cut(s) 14, 175, 294
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 211, 496
BoxI GACNNNNGTC 1 cut(s) 296
BpiI GAAGAC 2 cut(s) 105, 159
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 48, 457
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 353
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 48, 457
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 49, 353
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 49, 353
BsmFI GGGAC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 7 cut(s) 23, 26, 78, 123, 179, 329, 357
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 413
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 48, 457
BssMI GATC 1 cut(s) 343
BssNAI GTATAC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 3 cut(s) 265, 448, 504
Bst6I CTCTTC 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 5 cut(s) 31, 78, 385, 397, 419
BstNI CCWGG 1 cut(s) 458
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 456
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 400
BstV2I GAAGAC 2 cut(s) 105, 159
BstZ17I GTATAC 1 cut(s) 374
BsuI GTATCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 3 cut(s) 14, 175, 294
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 216
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 368
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 49, 307
CviJI RGCY 7 cut(s) 53, 65, 136, 196, 379, 400, 422
CviKI_1 RGCY 7 cut(s) 53, 65, 136, 196, 379, 400, 422
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 2 cut(s) 12, 194
Eco130I CCWWGG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 52, 310
FaiI YATR 5 cut(s) 36, 50, 273, 308, 374
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 48, 306
FauI CCCGC 2 cut(s) 116, 336
FblI GTMKAC 3 cut(s) 290, 373, 405
Fnu4HI GCNGC 4 cut(s) 26, 79, 358, 389
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 26, 79, 358, 389
GlaI GCGC 1 cut(s) 486
GluI GCNGC 4 cut(s) 26, 79, 358, 389
GsaI CCCAGC 1 cut(s) 112
HapII CCGG 1 cut(s) 369
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 487
Hin1II CATG 2 cut(s) 52, 310
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HincII GTYRAC 2 cut(s) 291, 406
HindII GTYRAC 2 cut(s) 291, 406
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 4 cut(s) 104, 114, 240, 283
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 4 cut(s) 268, 291, 374, 406
Hpy188I TCNGA 5 cut(s) 172, 192, 259, 316, 427
Hpy188III TCNNGA 4 cut(s) 88, 206, 230, 301
Hpy8I GTNNAC 4 cut(s) 268, 291, 374, 406
Hpy99I CGWCG 6 cut(s) 283, 295, 407, 410, 413, 452
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 3 cut(s) 265, 448, 504
HpyCH4IV ACGT 5 cut(s) 13, 84, 174, 293, 324
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 78, 385, 397, 419
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 5 cut(s) 13, 84, 174, 293, 324
Hsp92II CATG 2 cut(s) 52, 310
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 464
LpnPI CCDG 8 cut(s) 122, 125, 204, 215, 382, 410, 443, 470
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 2 cut(s) 211, 496
MaeII ACGT 5 cut(s) 13, 84, 174, 293, 324
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 110, 159, 221, 245, 481
MluCI AATT 3 cut(s) 184, 212, 337
MluI ACGCGT 1 cut(s) 411
MlyI GAGTC 2 cut(s) 123, 234
MmeI TCCRAC 2 cut(s) 282, 294
MnlI CCTC 1 cut(s) 503
MseI TTAA 1 cut(s) 350
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 5 cut(s) 31, 78, 385, 397, 419
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 52, 310
PciSI GCTCTTC 1 cut(s) 464
PcsI WCGNNNNNNNCGW 2 cut(s) 287, 431
PfeI GAWTC 2 cut(s) 104, 283
PkrI GCNGC 4 cut(s) 27, 80, 359, 390
PleI GAGTC 2 cut(s) 122, 234
PpsI GAGTC 2 cut(s) 122, 234
PshAI GACNNNNGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 456
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SalI GTCGAC 2 cut(s) 289, 404
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 4 cut(s) 26, 79, 358, 389
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 2 cut(s) 123, 234
ScrFI CCNGG 1 cut(s) 458
SfaNI GCATC 2 cut(s) 211, 496
SgrDI CGTCGACG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 184, 212, 337
SsiI CCGC 7 cut(s) 23, 26, 78, 123, 179, 329, 357
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 265, 448, 504
TaiI ACGT 5 cut(s) 16, 87, 177, 296, 327
TaqI TCGA 7 cut(s) 117, 281, 290, 300, 342, 405, 450
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 184, 212, 337
TauI GCSGC 3 cut(s) 28, 81, 360
TfiI GAWTC 2 cut(s) 104, 283
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 36, 223
TseI GCWGC 1 cut(s) 388
TspRI CASTG 2 cut(s) 36, 223
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XmiI GTMKAC 3 cut(s) 290, 373, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.