pycom16g05290

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013194
Physical Location & Seq
Reverse (-)
3442241 .. 3442939
699 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGCTTGACTGGAAGGCAGTGGGGATGGATTCTGAACCCAGGTCGGATGATGAAATTGGTCCCCTCTCTCCTTTGGCTGTTAGTATTGCAGCTGGAATTTCTGGTTCTGTTGCTGCAGCTGCTTCTCATTGTTTTGACACTGCCAAATCTCGATCAGAATGTACTGTGCTGCCCAAGTATGTCTCGACGGAGAGGAAGCTCCTGAAATGGGGAAGACCAGGGAATAGGTTTGAGAGAGTTACAGGGATCCACCCTTCAGACAGGAATCTCCTGTTCCGCAGCCTTGGGTTACGGATGGCTCGCAGCGGGTTCGCATCATTCGTCATGGTCGGAAGTTATTTCTTGGCTGTGGATCTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

122

Amino Acids

13.13

Weight (kDa)

9.14

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 277, 306
AclWI GGATC 3 cut(s) 241, 254, 360
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 208
AjnI CCWGG 2 cut(s) 38, 217
AluBI AGCT 3 cut(s) 92, 119, 199
AluI AGCT 3 cut(s) 92, 119, 199
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 241, 254, 360
ApeKI GCWGC 7 cut(s) 89, 113, 116, 119, 169, 279, 303
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 59
BamHI GGATCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BccI CCATC 2 cut(s) 19, 289
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 2 cut(s) 40, 219
BcoDI GTCTC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
BlsI GCNGC 7 cut(s) 91, 115, 118, 121, 171, 281, 305
Bme1390I CCNGG 2 cut(s) 40, 219
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 61, 248
BmrFI CCNGG 2 cut(s) 40, 219
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 38, 218, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 40, 219
BseDI CCNNGG 3 cut(s) 38, 218, 283
BseGI GGATG 3 cut(s) 30, 52, 300
BseLI CCNNNNNNNGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 152, 246, 352
BspACI CCGC 2 cut(s) 277, 306
BspLI GGNNCC 2 cut(s) 61, 248
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 241, 254, 360
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 38, 218, 283
BssMI GATC 3 cut(s) 152, 246, 352
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 40, 219
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 301
BstF5I GGATG 3 cut(s) 30, 52, 300
BstKTI GATC 3 cut(s) 155, 249, 355
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 152, 246, 352
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 40, 219
BstSCI CCNGG 2 cut(s) 38, 217
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 246, 352
BstYI RGATCY 2 cut(s) 246, 352
BtsCI GGATG 3 cut(s) 30, 52, 300
BtsI GCAGTG 2 cut(s) 24, 138
BtsIMutI CAGTG 2 cut(s) 24, 138
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 325
CviJI RGCY 7 cut(s) 77, 92, 119, 199, 282, 299, 347
CviKI_1 RGCY 7 cut(s) 77, 92, 119, 199, 282, 299, 347
CviQI GTAC 1 cut(s) 162
DpnI GATC 3 cut(s) 154, 248, 354
DpnII GATC 3 cut(s) 152, 246, 352
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 38, 217
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 1 cut(s) 328
FaiI YATR 2 cut(s) 180, 326
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
FokI GGATG 3 cut(s) 37, 59, 307
Fsp4HI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
GluI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
Hin1II CATG 1 cut(s) 328
HinfI GANTC 2 cut(s) 29, 265
Hpy188I TCNGA 5 cut(s) 34, 46, 157, 259, 332
Hpy188III TCNNGA 3 cut(s) 150, 184, 202
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 7, 264
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 89, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 152, 246, 352
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
LweI GCATC 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 238, 288
MalI GATC 3 cut(s) 154, 248, 354
MboI GATC 3 cut(s) 152, 246, 352
MboII GAAGA 2 cut(s) 225, 347
MflI RGATCY 2 cut(s) 246, 352
MluCI AATT 2 cut(s) 54, 96
MmeI TCCRAC 2 cut(s) 24, 310
MnlI CCTC 2 cut(s) 74, 186
MspA1I CMGCKG 3 cut(s) 92, 119, 306
MspR9I CCNGG 2 cut(s) 40, 219
MvaI CCWGG 2 cut(s) 40, 219
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 3 cut(s) 152, 246, 352
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 61, 248
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 2 cut(s) 29, 265
PkrI GCNGC 7 cut(s) 91, 115, 118, 121, 171, 281, 305
Psp6I CCWGG 2 cut(s) 38, 217
PspGI CCWGG 2 cut(s) 38, 217
PspN4I GGNNCC 2 cut(s) 61, 248
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 2 cut(s) 246, 352
PvuII CAGCTG 2 cut(s) 92, 119
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
Sau3AI GATC 3 cut(s) 152, 246, 352
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 40, 219
SetI ASST 5 cut(s) 44, 94, 121, 201, 230
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 59
Sse9I AATT 2 cut(s) 54, 96
SsiI CCGC 2 cut(s) 277, 306
StyD4I CCNGG 2 cut(s) 38, 217
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 151, 185
TasI AATT 2 cut(s) 54, 96
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 2 cut(s) 29, 265
TscAI CASTG 2 cut(s) 24, 145
TseI GCWGC 7 cut(s) 89, 113, 116, 119, 169, 279, 303
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 203, 307
TspRI CASTG 2 cut(s) 24, 145
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.