pycom16g05470

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009683
Physical Location & Seq
Forward (+)
3531170 .. 3532041
872 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
ATGTCTTCCTCCATGGCATCCTCAGCTTCCCAATCTGCTGACGAAAACGAGGGGTTTGATCTGTTGAAGTGTTCGACGGTCCAAGAGGGCAAGAAAGATGCGGAGATCAGGTTACCGTTAGGGTATCGATTTGATCCCACCGGAGATGAGATTCTTGTGTACTACCTGTTTAACAAGATTATGGACCGTGCAATGCCTACCTACGATCTTATAAAAGAGGTTGATGTGTACGAGTGTGACCCGAATCAGCTGCCGAATGGTGACTTCAGACATACTGCCGATTTCAATGCTGCCTATTACTTCGCCAATAGAGAACCCTTTGACGCTTGTGAAGGCAAGATAATTAAGACGGCTACAAATGGTGGTTACTGGAAGGTGATCGATGACGAAGAGGAGGTTTTGTTCGAGGACAGCAATGTAATCGTAGGGTTTGAAACCGTCATGAAGTTCTACAAGGGGCAGGCGCCAAACGGGACCAAAACTCCCTTTGTCATGAACGAATACAGGCTCAATCCTCGTGTAGTACCTGCTCATGTGCTGAATGAAAGCATTAAGAATAAGATCGAGAAGTACGTGGTATGCCAAATTATAAACAAGGAGGTTTCGAATCAACCAGCAATCGAGTATGGACAGGGATTGCTCGAACTACTGCAAAAATCATCTGCCGGCACCGTTGAAGATGGAGTACCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

232

Amino Acids

26.0

Weight (kDa)

4.67

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 39 - 170 3.4e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 212, 590
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 2 cut(s) 463, 668
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 5 cut(s) 161, 230, 525, 572, 687
AgsI TTSAA 4 cut(s) 67, 286, 434, 677
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 2 cut(s) 26, 250
AluI AGCT 2 cut(s) 26, 250
AlwI GGATC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 250, 290
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 3 cut(s) 79, 184, 474
AsuHPI GGTGA 2 cut(s) 272, 388
AsuII TTCGAA 1 cut(s) 605
AvaII GGWCC 3 cut(s) 79, 184, 474
BanI GGYRCC 2 cut(s) 463, 668
BarI GAAGNNNNNNTAC 1 cut(s) 669
BauI CACGAG 1 cut(s) 516
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 237, 277
BccI CCATC 1 cut(s) 674
BceAI ACGGC 1 cut(s) 366
BcgI CGANNNNNNTGC 6 cut(s) 232, 266, 269, 303, 403, 437
BfoI RGCGCY 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 2 cut(s) 251, 291
BlsI GCNGC 2 cut(s) 252, 292
Bme18I GGWCC 3 cut(s) 79, 184, 474
BmgT120I GGNCC 3 cut(s) 79, 184, 474
BmiI GGNNCC 3 cut(s) 465, 475, 670
BmsI GCATC 2 cut(s) 26, 88
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 605
Bsa29I ATCGAT 2 cut(s) 127, 381
BsaAI YACGTR 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 386, 416, 466, 496
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 198, 421
BseCI ATCGAT 2 cut(s) 127, 381
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 17
BseMI GCAATG 2 cut(s) 198, 421
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 237, 277
BshNI GGYRCC 2 cut(s) 463, 668
BshVI ATCGAT 2 cut(s) 127, 381
BsiSI CCGG 2 cut(s) 141, 666
BslFI GGGAC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 605
Bsp143I GATC 6 cut(s) 58, 105, 133, 205, 378, 561
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 35
BspDI ATCGAT 2 cut(s) 127, 381
BspHI TCATGA 2 cut(s) 441, 492
BspLI GGNNCC 3 cut(s) 465, 475, 670
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 1 cut(s) 128
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 2 cut(s) 463, 668
BsrDI GCAATG 2 cut(s) 198, 421
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 6 cut(s) 58, 105, 133, 205, 378, 561
BssNI GRCGYC 1 cut(s) 464
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 516
Bst4CI ACNGT 5 cut(s) 79, 117, 188, 439, 673
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 462, 667
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 6 cut(s) 61, 108, 136, 208, 381, 564
BstMBI GATC 6 cut(s) 58, 105, 133, 205, 378, 561
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstPI GGTNACC 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 237, 277
Bsu15I ATCGAT 2 cut(s) 127, 381
BsuTUI ATCGAT 2 cut(s) 127, 381
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 17
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 2 cut(s) 462, 667
CciI TCATGA 2 cut(s) 441, 492
CfoI GCGC 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 665
Cfr13I GGNCC 3 cut(s) 79, 184, 474
ClaI ATCGAT 2 cut(s) 127, 381
CseI GACGC 1 cut(s) 332
Csp6I GTAC 5 cut(s) 160, 229, 524, 571, 686
CviAII CATG 4 cut(s) 13, 442, 493, 533
CviJI RGCY 4 cut(s) 26, 250, 353, 508
CviKI_1 RGCY 4 cut(s) 26, 250, 353, 508
CviQI GTAC 5 cut(s) 160, 229, 524, 571, 686
DdeI CTNAG 1 cut(s) 22
DinI GGCGCC 1 cut(s) 465
DpnI GATC 6 cut(s) 60, 107, 135, 207, 380, 563
DpnII GATC 6 cut(s) 58, 105, 133, 205, 378, 561
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 3 cut(s) 79, 184, 474
Eco57I CTGAAG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 465
EheI GGCGCC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 445, 496, 536
FaqI GGGAC 1 cut(s) 487
FatI CATG 4 cut(s) 12, 441, 492, 532
Fnu4HI GCNGC 2 cut(s) 251, 291
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 2 cut(s) 251, 291
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 251, 291
HaeII RGCGCY 1 cut(s) 467
HapII CCGG 2 cut(s) 141, 666
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 4 cut(s) 16, 445, 496, 536
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 3 cut(s) 151, 244, 607
HpaII CCGG 2 cut(s) 141, 666
HphI GGTGA 2 cut(s) 272, 388
Hpy166II GTNNAC 2 cut(s) 160, 229
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 3 cut(s) 442, 493, 565
Hpy8I GTNNAC 2 cut(s) 160, 229
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 326, 367
HpyCH4III ACNGT 5 cut(s) 79, 117, 188, 439, 673
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 2 cut(s) 191, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 4 cut(s) 16, 445, 496, 536
HspAI GCGC 1 cut(s) 464
KasI GGCGCC 1 cut(s) 463
KroI GCCGGC 1 cut(s) 665
KroNI GCCGGC 1 cut(s) 667
Kzo9I GATC 6 cut(s) 58, 105, 133, 205, 378, 561
Lsp1109I GCAGC 2 cut(s) 237, 277
LweI GCATC 2 cut(s) 26, 88
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 111, 236, 260, 365
MalI GATC 6 cut(s) 60, 107, 135, 207, 380, 563
MboI GATC 6 cut(s) 58, 105, 133, 205, 378, 561
MboII GAAGA 2 cut(s) 401, 689
MluCI AATT 2 cut(s) 342, 585
Mly113I GGCGCC 1 cut(s) 464
MroNI GCCGGC 1 cut(s) 665
MseI TTAA 3 cut(s) 171, 345, 552
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 2 cut(s) 141, 666
MwoI GCNNNNNNNGC 1 cut(s) 23
NaeI GCCGGC 1 cut(s) 667
NarI GGCGCC 1 cut(s) 464
NcoI CCATGG 1 cut(s) 12
NdeII GATC 6 cut(s) 58, 105, 133, 205, 378, 561
NgoMIV GCCGGC 1 cut(s) 665
NlaIII CATG 4 cut(s) 16, 445, 496, 536
NlaIV GGNNCC 3 cut(s) 465, 475, 670
NmuCI GTSAC 2 cut(s) 236, 260
NspV TTCGAA 1 cut(s) 605
PagI TCATGA 2 cut(s) 441, 492
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PdiI GCCGGC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 151, 244, 607
PkrI GCNGC 2 cut(s) 252, 292
PluTI GGCGCC 1 cut(s) 467
Ppu21I YACGTR 1 cut(s) 574
PsiI TTATAA 2 cut(s) 212, 590
PspEI GGTNACC 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 465, 475, 670
PspPI GGNCC 3 cut(s) 79, 184, 474
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 5 cut(s) 161, 230, 525, 572, 687
RsaNI GTAC 5 cut(s) 160, 229, 524, 571, 686
SaqAI TTAA 3 cut(s) 171, 345, 552
SatI GCNGC 2 cut(s) 251, 291
Sau3AI GATC 6 cut(s) 58, 105, 133, 205, 378, 561
Sau96I GGNCC 3 cut(s) 79, 184, 474
SfaNI GCATC 2 cut(s) 26, 88
SfoI GGCGCC 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 605
SinI GGWCC 3 cut(s) 79, 184, 474
Sse9I AATT 2 cut(s) 342, 585
SsiI CCGC 1 cut(s) 101
SspDI GGCGCC 1 cut(s) 463
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 5 cut(s) 79, 117, 188, 439, 673
TaiI ACGT 1 cut(s) 576
TaqI TCGA 8 cut(s) 74, 127, 381, 405, 564, 605, 621, 642
TasI AATT 2 cut(s) 342, 585
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 151, 244, 607
Tru1I TTAA 3 cut(s) 171, 345, 552
Tru9I TTAA 3 cut(s) 171, 345, 552
TseFI GTSAC 2 cut(s) 236, 260
TseI GCWGC 2 cut(s) 250, 290
Tsp45I GTSAC 2 cut(s) 236, 260
TspDTI ATGAA 3 cut(s) 458, 509, 558
VpaK11BI GGWCC 3 cut(s) 79, 184, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.