Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

3688254 .. 3688801

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAACCGAAAGAGGTGGGAATCCCAAAGCTCCATTTCTTATCAATTCTGAAAAAATTAGTGAAATTTCTGTCCAGCTCTGTACGTTGGATCGTTGTGCCAGTTCGGTCTACTAGGACCACAATGAGCGGAGCTCCTTTGAAGTTCGAATACCCGATCCGAGATGCAATCTCCAGAATCCGATTCGCCCCGAAATCCGACAACCTCCTCATCTCCTCTTGGGACTCTAGCTTAAGATTGTACGACGTCGGAAGCTCACAGCTCAGATTAGAGGCTCCGTCGGAAGCGGCGCTCCTCGATTGCTGTTTCCAGGACGAGTCCGTCGCGTTTGCTGCCGGTTCTGATGGCGTCATCAGAAGGTTTGTCACTGGGATTTGTTTCATTTTGCAGTGGGACTCTGTTGAAATTAACCTTGACCACTGTCTTAACACTTTACTTTTTAGCTTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

7.67

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	326
AciI	CCGC	2 cut(s)	129, 287
AclWI	GGATC	2 cut(s)	98, 151
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	2 cut(s)	246, 348
AfaI	GTAC	2 cut(s)	84, 242
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	142, 404
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	7 cut(s)	31, 78, 134, 231, 255, 262, 444
AluI	AGCT	7 cut(s)	31, 78, 134, 231, 255, 262, 444
Alw21I	GWGCWC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	98, 151
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	311
BfaI	CTAG	2 cut(s)	114, 228
BfoI	RGCGCY	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	288, 333
BlsI	GCNGC	2 cut(s)	289, 334
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	6, 276
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	147
BsaHI	GRCGYC	2 cut(s)	246, 348
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	101, 373
BseBI	CCWGG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	101, 373
BseRI	GAGGAG	3 cut(s)	197, 205, 284
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	236, 407
BsmFI	GGGAC	2 cut(s)	236, 407
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	90, 156
BspACI	CCGC	2 cut(s)	129, 287
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	6, 276
BspPI	GGATC	2 cut(s)	98, 151
BspT104I	TTCGAA	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	101, 373
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	2 cut(s)	90, 156
BssNI	GRCGYC	2 cut(s)	246, 348
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	2 cut(s)	246, 348
BstAFI	CTTAAG	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	93, 159
BstMBI	GATC	2 cut(s)	90, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	366, 395, 418
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	83, 241
CviJI	RGCY	8 cut(s)	31, 78, 134, 231, 255, 262, 275, 444
CviKI_1	RGCY	8 cut(s)	31, 78, 134, 231, 255, 262, 275, 444
CviQI	GTAC	2 cut(s)	83, 241
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	92, 158
DpnII	GATC	2 cut(s)	90, 156
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	136
FaqI	GGGAC	2 cut(s)	236, 407
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	288, 333
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	288, 333
FspBI	CTAG	2 cut(s)	114, 228
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	288, 333
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	293
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	2 cut(s)	246, 348
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	6 cut(s)	21, 177, 183, 224, 317, 395
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	9 cut(s)	51, 161, 182, 199, 251, 266, 283, 343, 356
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	4 cut(s)	248, 251, 283, 326
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	2 cut(s)	85, 246
HpyCH4V	TGCA	2 cut(s)	167, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	85, 246
Hsp92I	GRCGYC	2 cut(s)	246, 348
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	90, 156
LmnI	GCTCC	5 cut(s)	36, 131, 139, 280, 297
LpnPI	CCDG	7 cut(s)	88, 114, 187, 296, 323, 349, 354
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	114, 228
MaeII	ACGT	2 cut(s)	85, 246
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	92, 158
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	2 cut(s)	90, 156
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	5 cut(s)	45, 56, 65, 405, 448
MlyI	GAGTC	3 cut(s)	218, 326, 389
MmeI	TCCRAC	4 cut(s)	68, 222, 229, 261
MnlI	CCTC	6 cut(s)	7, 215, 218, 226, 265, 305
MseI	TTAA	4 cut(s)	233, 408, 426, 446
MspCI	CTTAAG	1 cut(s)	232
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	2 cut(s)	90, 156
NlaIV	GGNNCC	2 cut(s)	6, 276
NmuCI	GTSAC	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	21, 177, 183
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	289, 334
PleI	GAGTC	3 cut(s)	218, 325, 389
PpsI	GAGTC	3 cut(s)	218, 325, 389
PshAI	GACNNNNGTC	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	6, 276
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	84, 242
RsaNI	GTAC	2 cut(s)	83, 241
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	233, 408, 426, 446
SatI	GCNGC	2 cut(s)	288, 333
Sau3AI	GATC	2 cut(s)	90, 156
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	3 cut(s)	218, 326, 389
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	5 cut(s)	45, 56, 65, 405, 448
SsiI	CCGC	2 cut(s)	129, 287
SspMI	CTAG	2 cut(s)	114, 228
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	2 cut(s)	88, 249
TaqI	TCGA	2 cut(s)	147, 297
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	5 cut(s)	45, 56, 65, 405, 448
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	21, 177, 183
Tru1I	TTAA	4 cut(s)	233, 408, 426, 446
Tru9I	TTAA	4 cut(s)	233, 408, 426, 446
TscAI	CASTG	3 cut(s)	373, 395, 425
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	2 cut(s)	267, 310
TspRI	CASTG	3 cut(s)	373, 395, 425
Vha464I	CTTAAG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	114, 228
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.