Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011256

Physical Location & Seq

Genomic Coordinates Forward (+)

6931074 .. 6933028

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGGAGGCAAAGCTACTGGGTACCCGCCACGAGACTCCTTATGTCAAATCACTTGATTTGGTGGTCTTAAGGAAGGGATCCGGAGAGAGGATCACTTCTCCTTGTTTTGGCACCTTAGTCGACCTACTTTGGGGCCCACTCACTACAAAACAGATCCGACATCCACCGTCCGTCGTACGAACGCACCAGACTCCTCTCGTAACTCCTGCCGCTATAAATAAAACCATTTCTCTATTTTTCGACCTCGCAACACAATTTGCTCTTTCAGTCGCGACTTCCCGGAGCCTAAAAAACCAGAAAAACAATCTGCAAACAATGGCAACCGTTGATGATGGGGTAGAGATCAACAGCAAGGAGAAGGAACTGAAGCATCTACGGTTTCTGAGGGTGGCGGCGATTCAGACGCTGGTGTTCGTTTCGAGTCTGTACGATTACGCTAAGCAAAACTCTGGGCCGCTCAGATCAACGGTCGGGACTGTGGAGGGCGCTGTCACCGCCGTCGTCGGTCCTGTTTACCGGAAGTTCAAGGGCGTTCCTGACGATGTCCTCTCTTTTCTCGACACCAAGGTAGATGAAGCTACAGACAAGTTCGATAAGCATGCTCCACCTGTGGCTAAGCAGGTTGCGAGCCAAGCGCATTGTTTGATCCAGAAAGCAGCGGAGAAGGGACAGAAATTTGTAAGGGAGGCTCAAACTGGCGGTCCACGCTCAGCTATTCACTATGCAGCTACTGAGTACAAGAACTTTGTCTTGAACCAATCTGTGAAGCTGTGGGTCGGACTCAACAAGTACCCTTCCATCCACACAGTGGCACAGAAGGCTGCACCAACCGCTGCTCGCTGGTCTGACAAATACAACCACACCGTAAAGCACATGACCCGCAAAGGCTATGCCATCTTCCGCTATCTACCCCTTGTTCCGATCGAAGAGATATCCAATGCGGTTAAAAAGGGAGAGGTGGAGAAGAAAGAAGATGCAGCTGCAAACGTCGAGCACAAATCTGAATCTGATTCTTCCGATTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

344

Amino Acids

37.88

Weight (kDa)

9.46

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	118 - 317	2.7e-83	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67360 AT1G67360
fragaria_vesca	FvH4_4g23790
malus_domestica	MD01G1161800.v1.1 MD08G1165600.v1.1 MD13G1118800.v1.1 MD16G1119000.v1.1
prunus_persica	Prupe.1G226000_v2.0.a1
pyrus_communis	pycom13g10370 pycom16g10190
rosa_chinensis	RchiOBHm_Chr4g0430281
rosa_laevigata	RLG00000006988
rosa_multiflora	Rmu_sc0001089.1_g000026
rosa_roxburghii	Rroxscaffold_5G00372080
rosa_rugosa	Rorug04G0242400
rosa_samantha	Rh4AG298800 Rh4BG305400 Rh4CG320900 Rh4DG302700
rosa_wichuraiana	Rw4G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	2 cut(s)	23, 113
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccBSI	CCGCTC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	83
AclWI	GGATC	5 cut(s)	75, 88, 101, 151, 643
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	389
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	5 cut(s)	25, 180, 431, 740, 794
AfiI	CCNNNNNNNGG	4 cut(s)	90, 110, 133, 811
AflII	CTTAAG	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	529, 757
AluBI	AGCT	6 cut(s)	16, 581, 716, 731, 772, 983
AluI	AGCT	6 cut(s)	16, 581, 716, 731, 772, 983
Alw21I	GWGCWC	1 cut(s)	999
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	5 cut(s)	75, 88, 101, 151, 643
AlwNI	CAGNNNCTG	2 cut(s)	409, 734
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	136, 455
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	6 cut(s)	659, 728, 824, 836, 980, 983
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
Asp718I	GGTACC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	491, 640
AspS9I	GGNCC	5 cut(s)	136, 137, 455, 509, 704
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	509, 704
BaeGI	GKGCMC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	2 cut(s)	23, 113
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	999
BbvI	GCAGC	6 cut(s)	671, 740, 811, 823, 970, 992
BccI	CCATC	3 cut(s)	329, 809, 905
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 584, 618
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	9 cut(s)	213, 396, 458, 660, 729, 825, 837, 981, 984
BlpI	GCTNAGC	3 cut(s)	441, 618, 712
BlsI	GCNGC	9 cut(s)	214, 397, 459, 661, 730, 826, 838, 982, 985
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	509, 704
BmgT120I	GGNCC	5 cut(s)	136, 137, 455, 509, 704
BmiI	GGNNCC	6 cut(s)	25, 82, 115, 137, 138, 287
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	382, 967
BmuI	ACTGGG	1 cut(s)	29
Bpu1102I	GCTNAGC	3 cut(s)	441, 618, 712
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	2 cut(s)	83, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 110, 133, 811
Bse1I	ACTGG	2 cut(s)	24, 703
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	163, 801
BseLI	CCNNNNNNNGG	4 cut(s)	90, 110, 133, 811
BseMII	CTCAG	4 cut(s)	377, 475, 726, 726
BseNI	ACTGG	2 cut(s)	24, 703
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	6 cut(s)	671, 740, 811, 823, 970, 992
BsgI	GTGCAG	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	2 cut(s)	474, 927
BshFI	GGCC	2 cut(s)	138, 457
BshNI	GGYRCC	2 cut(s)	23, 113
BsiEI	CGRYCG	2 cut(s)	474, 927
BsiHKAI	GWGCWC	1 cut(s)	999
BsiSI	CCGG	3 cut(s)	84, 283, 520
BsiWI	CGTACG	1 cut(s)	178
BslFI	GGGAC	2 cut(s)	490, 684
BslI	CCNNNNNNNGG	4 cut(s)	90, 110, 133, 811
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	490, 684
BsnI	GGCC	2 cut(s)	138, 457
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 999
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
Bsp1720I	GCTNAGC	3 cut(s)	441, 618, 712
Bsp68I	TCGCGA	1 cut(s)	275
BspANI	GGCC	2 cut(s)	138, 457
BspCNI	CTCAG	4 cut(s)	378, 474, 725, 727
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	6 cut(s)	25, 82, 115, 137, 138, 287
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	5 cut(s)	75, 88, 101, 151, 643
BspT107I	GGYRCC	2 cut(s)	23, 113
BspTI	CTTAAG	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	24, 703
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	32
Bst4CI	ACNGT	7 cut(s)	171, 328, 381, 472, 481, 811, 868
Bst6I	CTCTTC	1 cut(s)	924
BstAFI	CTTAAG	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	603, 631, 841
BstDEI	CTNAG	7 cut(s)	118, 386, 441, 461, 618, 712, 735
BstF5I	GGATG	2 cut(s)	163, 801
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	2 cut(s)	491, 640
BstKTI	GATC	7 cut(s)	83, 96, 159, 348, 467, 651, 927
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
BstMCI	CGRYCG	2 cut(s)	474, 927
BstMWI	GCNNNNNNNGC	5 cut(s)	497, 635, 708, 821, 833
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	6 cut(s)	671, 740, 811, 823, 970, 992
BstX2I	RGATCY	2 cut(s)	80, 156
BstYI	RGATCY	2 cut(s)	80, 156
BsuRI	GGCC	2 cut(s)	138, 457
BtsCI	GGATG	2 cut(s)	163, 801
BtsIMutI	CAGTG	1 cut(s)	816
BtuMI	TCGCGA	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	603, 631, 841
CaiI	CAGNNNCTG	2 cut(s)	409, 734
CfoI	GCGC	2 cut(s)	491, 640
Cfr13I	GGNCC	5 cut(s)	136, 137, 455, 509, 704
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	5 cut(s)	24, 179, 430, 739, 793
CviAII	CATG	2 cut(s)	602, 877
CviQI	GTAC	5 cut(s)	24, 179, 430, 739, 793
DdeI	CTNAG	7 cut(s)	118, 386, 441, 461, 618, 712, 735
DpnI	GATC	7 cut(s)	82, 95, 158, 347, 466, 650, 926
DpnII	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
DraIII	CACNNNGTG	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	936
Eco47I	GGWCC	2 cut(s)	509, 704
Eco57I	CTGAAG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	605, 880
FaiI	YATR	6 cut(s)	45, 218, 603, 726, 878, 894
FaqI	GGGAC	2 cut(s)	490, 684
FatI	CATG	2 cut(s)	601, 876
FauI	CCCGC	2 cut(s)	35, 890
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	9 cut(s)	213, 396, 458, 660, 729, 825, 837, 981, 984
FokI	GGATG	2 cut(s)	150, 788
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	9 cut(s)	213, 396, 458, 660, 729, 825, 837, 981, 984
GlaI	GCGC	2 cut(s)	490, 639
GluI	GCNGC	9 cut(s)	213, 396, 458, 660, 729, 825, 837, 981, 984
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	138, 457
HapII	CCGG	3 cut(s)	84, 283, 520
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	2 cut(s)	491, 640
Hin1II	CATG	2 cut(s)	605, 880
Hin6I	GCGC	2 cut(s)	489, 638
HinP1I	GCGC	2 cut(s)	489, 638
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	8 cut(s)	37, 193, 400, 424, 783, 1007, 1013, 1022
HpaII	CCGG	3 cut(s)	84, 283, 520
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	3 cut(s)	124, 517, 707
Hpy188III	TCNNGA	7 cut(s)	84, 274, 475, 539, 560, 652, 754
Hpy8I	GTNNAC	3 cut(s)	124, 517, 707
Hpy99I	CGWCG	4 cut(s)	179, 506, 509, 995
HpyAV	CCTTC	5 cut(s)	70, 355, 661, 807, 814
HpyCH4III	ACNGT	7 cut(s)	171, 328, 381, 472, 481, 811, 868
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	5 cut(s)	313, 728, 827, 980, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	497, 635, 708, 821, 833
HpyF3I	CTNAG	7 cut(s)	118, 386, 441, 461, 618, 712, 735
HpySE526I	ACGT	1 cut(s)	990
Hsp92II	CATG	2 cut(s)	605, 880
HspAI	GCGC	2 cut(s)	489, 638
Kpn2I	TCCGGA	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	27
Kzo9I	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
LmnI	GCTCC	2 cut(s)	285, 610
Lsp1109I	GCAGC	6 cut(s)	671, 740, 811, 823, 970, 992
LweI	GCATC	2 cut(s)	382, 967
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	2 cut(s)	202, 493
MalI	GATC	7 cut(s)	82, 95, 158, 347, 466, 650, 926
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
MboII	GAAGA	5 cut(s)	892, 941, 979, 986, 1008
MflI	RGATCY	2 cut(s)	80, 156
MhlI	GDGCHC	2 cut(s)	140, 999
MluCI	AATT	2 cut(s)	257, 677
MlyI	GAGTC	4 cut(s)	31, 187, 433, 777
MmeI	TCCRAC	2 cut(s)	184, 760
MnlI	CCTC	8 cut(s)	84, 207, 257, 381, 478, 560, 682, 952
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	2 cut(s)	71, 948
MspA1I	CMGCKG	3 cut(s)	662, 836, 983
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	3 cut(s)	84, 283, 520
MspR9I	CCNGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	5 cut(s)	497, 635, 708, 821, 833
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
NlaIII	CATG	2 cut(s)	605, 880
NlaIV	GGNNCC	6 cut(s)	25, 82, 115, 137, 138, 287
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	275
NspI	RCATGY	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	605
PfeI	GAWTC	4 cut(s)	400, 1007, 1013, 1022
Pfl23II	CGTACG	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	811
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	9 cut(s)	214, 397, 459, 661, 730, 826, 838, 982, 985
Ple19I	CGATCG	1 cut(s)	927
PleI	GAGTC	4 cut(s)	31, 187, 432, 777
PpsI	GAGTC	4 cut(s)	31, 187, 432, 777
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	6 cut(s)	25, 82, 115, 137, 138, 287
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	5 cut(s)	136, 137, 455, 509, 704
PstNI	CAGNNNCTG	2 cut(s)	409, 734
PsuI	RGATCY	2 cut(s)	80, 156
PsyI	GACNNNGTC	1 cut(s)	545
PvuI	CGATCG	1 cut(s)	927
PvuII	CAGCTG	1 cut(s)	983
RruI	TCGCGA	1 cut(s)	275
RsaI	GTAC	5 cut(s)	25, 180, 431, 740, 794
RsaNI	GTAC	5 cut(s)	24, 179, 430, 739, 793
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	71, 948
SatI	GCNGC	9 cut(s)	213, 396, 458, 660, 729, 825, 837, 981, 984
Sau3AI	GATC	7 cut(s)	80, 93, 156, 345, 464, 648, 924
Sau96I	GGNCC	5 cut(s)	136, 137, 455, 509, 704
SchI	GAGTC	4 cut(s)	31, 187, 433, 777
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	140, 999
SfaNI	GCATC	2 cut(s)	382, 967
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	2 cut(s)	509, 704
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	2 cut(s)	257, 677
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	7 cut(s)	171, 328, 381, 472, 481, 811, 868
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	7 cut(s)	123, 243, 422, 561, 594, 927, 993
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	257, 677
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	3 cut(s)	215, 398, 460
TfiI	GAWTC	4 cut(s)	400, 1007, 1013, 1022
Tru1I	TTAA	2 cut(s)	71, 948
Tru9I	TTAA	2 cut(s)	71, 948
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	6 cut(s)	659, 728, 824, 836, 980, 983
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	811
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	509, 704
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.