Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011761

Physical Location & Seq

Genomic Coordinates Forward (+)

7357768 .. 7359089

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGAGGATTAATTTTGTGAAGAATGGTGTGCTGAGATTGCCTCCCGGTTTTCGATTCCACCCGACGGACGAGGAGCTTGTTCTGCAGTACTTGCGGCGCAAGGTTTACTCCTGCCCCTTGCCTGCCTCCATCATCCCGGAGGTTGATGTCTGTAAGGCCGACCCTTGGGATTTGCCAGGTGATTGTGCGCAAGAGAGGTACTTCTTCAGCACTAGGGAGGCCAAGTACCCCAATGGGAACCGATCGAACAGAGCGACGGGCTCTGGTTACTGGAAGGCGACCGGATTGGACAAGCAGATTGTGACTTGCAGGGGCGGCCAAGTCGTGGGAATTAAGAAAACTCTGGTTTTTTATAGAGGAAAGCCTCCCCATGGCACTAGGACCGATTGGATTATGCACGAATACCGCCTTGTTTTGCCCGAAAATCCGGCCTCCATTGCCCCACCAGAAAAGAATGCAACCCAAAGCCCTGTGGTGCCAATGGACAACTGGGTTCTTTGCCGCATATTTTTGAAGAAAAGGGGAGGCAAAAATGAGGAGCAGCAAGTTCAACAGCCCTCCTGCGATGTTCGAAAACCAAAGAACTCGAGGCCTGTTTTCTACGATTTCATGACGAAAGACAGGGCAAATTTGAGCCTTGCACCTTGTTCTTCCTCCTCAGGGTCGAGTGGAATCACAGATGTGGTTTCTAGTGAGCAAGTAGACAATGATCACGAAGAAAGCAGTAGTTGCAATAGTTTAGGTTTCATTAGAAGAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

256

Amino Acids

28.8

Weight (kDa)

9.17

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 138	2.4e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13180
fragaria_vesca	FvH4_4g23130
malus_domestica	MD13G1125000.v1.1 MD16G1125800.v1.1
prunus_persica	Prupe.1G220400_v2.0.a1
pyrus_communis	pycom13g10900 pycom16g10690
rosa_chinensis	RchiOBHm_Chr4g0429461
rosa_laevigata	RLG00000007069
rosa_multiflora	Rmu_sc0003708.1_g000017 Rmu_sc0004825.1_g000003 Rmu_sc0004825.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371160
rosa_rugosa	Rorug04G0236200
rosa_samantha	Rh4AG291800 Rh4BG297600 Rh4CG313100 Rh4DG294700
rosa_wichuraiana	Rw4G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	4 cut(s)	97, 318, 409, 505
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	3 cut(s)	92, 203, 230
AfiI	CCNNNNNNNGG	5 cut(s)	67, 168, 328, 374, 663
AgsI	TTSAA	2 cut(s)	517, 554
AjnI	CCWGG	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	5 cut(s)	159, 222, 319, 432, 593
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	631
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	102, 193
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	2 cut(s)	48, 140
AsuHPI	GGTGA	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	574
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	2 cut(s)	48, 140
BfaI	CTAG	3 cut(s)	216, 381, 693
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	98, 319, 505, 545
BlsI	GCNGC	4 cut(s)	99, 320, 506, 546
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	48, 140, 180
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	242, 480
BmrFI	CCNGG	3 cut(s)	48, 140, 180
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	574
BpuMI	CCSGG	2 cut(s)	48, 140
BsaJI	CCNNGG	2 cut(s)	167, 373
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 168, 328, 374, 663
Bse1I	ACTGG	2 cut(s)	278, 497
Bse21I	CCTNAGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	167, 373
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	5 cut(s)	67, 168, 328, 374, 663
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	26, 675
BseNI	ACTGG	2 cut(s)	278, 497
BseRI	GAGGAG	3 cut(s)	89, 554, 649
BseXI	GCAGC	1 cut(s)	556
Bsh1285I	CGRYCG	2 cut(s)	248, 285
BshFI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	2 cut(s)	248, 285
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	4 cut(s)	48, 140, 285, 431
BslI	CCNNNNNNNGG	5 cut(s)	67, 168, 328, 374, 663
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BsoBI	CYCGRG	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	245, 712
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	4 cut(s)	97, 318, 409, 505
BspANI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BspCNI	CTCAG	2 cut(s)	27, 674
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	242, 480
BspMAI	CTGCAG	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	278, 497
BssECI	CCNNGG	2 cut(s)	167, 373
BssMI	GATC	2 cut(s)	245, 712
BssT1I	CCWWGG	2 cut(s)	167, 373
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	765
BstAPI	GCANNNNNTGC	2 cut(s)	94, 732
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	35, 661
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	102, 193
BstKTI	GATC	2 cut(s)	248, 715
BstMBI	GATC	2 cut(s)	245, 712
BstMCI	CGRYCG	2 cut(s)	248, 285
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	46, 138, 178
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	661
BsuRI	GGCC	5 cut(s)	161, 224, 321, 434, 595
BtgI	CCRYGG	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	102, 193
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	3 cut(s)	91, 202, 229
CviAII	CATG	2 cut(s)	374, 613
CviQI	GTAC	3 cut(s)	91, 202, 229
DdeI	CTNAG	2 cut(s)	35, 661
DpnI	GATC	2 cut(s)	247, 714
DpnII	GATC	2 cut(s)	245, 712
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	167, 373
Eco147I	AGGCCT	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	661
Eco88I	CYCGRG	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	167, 373
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	167, 373
FaeI	CATG	2 cut(s)	377, 616
FaiI	YATR	5 cut(s)	357, 375, 398, 509, 614
FatI	CATG	2 cut(s)	373, 612
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	98, 319, 505, 545
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	98, 319, 505, 545
FspBI	CTAG	3 cut(s)	216, 381, 693
FspI	TGCGCA	1 cut(s)	192
GlaI	GCGC	2 cut(s)	101, 192
GluI	GCNGC	4 cut(s)	98, 319, 505, 545
HaeIII	GGCC	5 cut(s)	161, 224, 321, 434, 595
HapII	CCGG	4 cut(s)	48, 140, 285, 431
HhaI	GCGC	2 cut(s)	102, 193
Hin1II	CATG	2 cut(s)	377, 616
Hin6I	GCGC	2 cut(s)	100, 191
HinP1I	GCGC	2 cut(s)	100, 191
HinfI	GANTC	2 cut(s)	57, 675
HpaII	CCGG	4 cut(s)	48, 140, 285, 431
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	109, 706
Hpy188III	TCNNGA	2 cut(s)	613, 716
Hpy8I	GTNNAC	2 cut(s)	109, 706
Hpy99I	CGWCG	2 cut(s)	70, 262
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	765
HpyCH4V	TGCA	6 cut(s)	88, 312, 400, 461, 644, 735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
HpyF3I	CTNAG	2 cut(s)	35, 661
Hsp92II	CATG	2 cut(s)	377, 616
HspAI	GCGC	2 cut(s)	100, 191
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	2 cut(s)	245, 712
LmnI	GCTCC	2 cut(s)	76, 541
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	216, 381, 693
MaeIII	GTNAC	2 cut(s)	269, 304
MalI	GATC	2 cut(s)	247, 714
MboI	GATC	2 cut(s)	245, 712
MboII	GAAGA	6 cut(s)	34, 199, 529, 645, 731, 768
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	13, 333, 631
MseI	TTAA	2 cut(s)	12, 336
MslI	CAYNNNNRTG	1 cut(s)	683
MspI	CCGG	4 cut(s)	48, 140, 285, 431
MspR9I	CCNGG	3 cut(s)	48, 140, 180
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	40, 85, 94, 318, 440, 732
NciI	CCSGG	2 cut(s)	48, 140
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	2 cut(s)	245, 712
NlaIII	CATG	2 cut(s)	377, 616
NlaIV	GGNNCC	2 cut(s)	242, 480
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	589
PagI	TCATGA	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	57, 675
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	99, 320, 506, 546
Ple19I	CGATCG	1 cut(s)	248
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	242, 480
PspPI	GGNCC	1 cut(s)	384
PspXI	VCTCGAGB	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	92, 203, 230
RsaNI	GTAC	3 cut(s)	91, 202, 229
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	12, 336
SatI	GCNGC	4 cut(s)	98, 319, 505, 545
Sau3AI	GATC	2 cut(s)	245, 712
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	48, 140, 180
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	7 cut(s)	81, 108, 147, 184, 203, 649, 748
SfcI	CTRYAG	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	3 cut(s)	13, 333, 631
SseBI	AGGCCT	1 cut(s)	595
SsiI	CCGC	4 cut(s)	97, 318, 409, 505
SspMI	CTAG	3 cut(s)	216, 381, 693
StuI	AGGCCT	1 cut(s)	595
StyD4I	CCNGG	3 cut(s)	46, 138, 178
StyI	CCWWGG	2 cut(s)	167, 373
TaaI	ACNGT	1 cut(s)	765
TaqI	TCGA	5 cut(s)	55, 248, 574, 590, 668
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	13, 333, 631
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	3 cut(s)	100, 321, 507
TfiI	GAWTC	2 cut(s)	57, 675
Tru1I	TTAA	2 cut(s)	12, 336
Tru9I	TTAA	2 cut(s)	12, 336
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	601, 739
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	3 cut(s)	216, 381, 693
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.