Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006130

Physical Location & Seq

Genomic Coordinates Forward (+)

7791944 .. 7793859

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCTTCAATCTCAGCCGTCCGGTCTCCACCGCGGCCTCCGTCCTCACCCGTCGGAAAATCTTCAACCCCGATACGTCGTTTCGTGCTAACCTTCCCTCCTATGCGCCAGAGACGCCGCGGACCCCAATCTCTTCTTCTTCCTGAAGCGGAGAAGTTTTCTGATTCAGGTGCAGGCGGTGGAAGCATTCTTATCGAGCGAAGAAGTGTTGTGTTTTCATCGATTGGCATGGTGGCTGCAGCTTTCTGTAATGTTTCGAAGGACGTAATTGCCCTCGCGTCTCAGTTTACTGACATGCCAGCACTTAGGGGGAAGGACTATGGCAAGTCGAAAATGAGTTATCCGGACTATACGGAAACTGAATCAGGTCTTCAGTACAAGGACTTGCGAGTAGGAGATGGCCCCAAACCAAAGGTGGGAGAGACCGTTGTGGTTGATTGGGATGGATACACCATAGGATATTATGGACGTATCTTTGAAGCTCGAAATAAAACAAAGGGCGGTTCATTTGAGGGTGATGACAAGGCCTTTTTCAAATTCAGGGTAGGATCTCAAGAGGTAATACCAGCTTTTGAGGAAGCCATTACAGGCATGGCTCTTGGAGGCATTAGAAGGATCATAGTGCCCCCGGAATTGGGATATCCAGACAATGACTACAACAAGAGTGGCCCAAGGCCGACAACATTTTCGGGCCAACGAGCTTTGGATTTCGTGCTGAGGAACCAAGGGCTGATAGACAAAACTCTTCTGTTCGATATTGAGCTCATCAAGATCATACCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

262

Amino Acids

28.64

Weight (kDa)

9.42

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	136 - 256	5.4e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13410 AT5G13410 AT5G13410
fragaria_vesca	FvH4_4g22550 FvH4_4g22550
malus_domestica	MD16G1141800.v1.1
prunus_persica	Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1 Prupe.1G214100_v2.0.a1
pyrus_communis	pycom16g11230
rosa_chinensis	RchiOBHm_Chr4g0428781
rosa_laevigata	RLG00000007127
rosa_multiflora	Rmu_co8065596.1_g000001 Rmu_sc0018825.1_g000003 Rmu_sc0022301.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370450
rosa_rugosa	Rorug04G0228500 Rorug04G0228600 Rorug04G0228700
rosa_samantha	Rh4AG285800 Rh4BG291700 Rh4CG307500 Rh4DG288800
rosa_wichuraiana	Rw4G024780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 120, 278
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
AclWI	GGATC	2 cut(s)	556, 623
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	2 cut(s)	165, 356
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
AgsI	TTSAA	4 cut(s)	9, 66, 479, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	242, 482, 569, 701, 763
AluI	AGCT	5 cut(s)	242, 482, 569, 701, 763
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	4 cut(s)	30, 106, 285, 416
AlwI	GGATC	2 cut(s)	556, 623
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	6 cut(s)	35, 400, 525, 667, 674, 691
ApeKI	GCWGC	2 cut(s)	236, 239
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	122, 401, 668, 691
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	39, 527
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	223, 251
BccI	CCATC	2 cut(s)	392, 437
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	4 cut(s)	30, 106, 285, 416
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	35, 118, 237, 240
BlsI	GCNGC	4 cut(s)	36, 119, 238, 241
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	122, 401, 668, 691
BmiI	GGNNCC	3 cut(s)	124, 403, 722
BmrFI	CCNGG	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	716
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	2 cut(s)	30, 416
BsaJI	CCNNGG	5 cut(s)	32, 118, 627, 671, 724
BsaWI	WCCGGW	2 cut(s)	21, 343
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BseAI	TCCGGA	1 cut(s)	343
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	5 cut(s)	32, 118, 627, 671, 724
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BseMII	CTCAG	3 cut(s)	27, 296, 707
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	223, 251
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	3 cut(s)	34, 120, 278
BshFI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BshVI	ATCGAT	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	3 cut(s)	22, 344, 629
BslI	CCNNNNNNNGG	3 cut(s)	416, 634, 635
BsmAI	GTCTC	4 cut(s)	30, 106, 285, 416
BsmBI	CGTCTC	2 cut(s)	106, 285
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
Bso31I	GGTCTC	2 cut(s)	30, 416
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	627, 765
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	548, 615, 771
BspACI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
BspANI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BspCNI	CTCAG	3 cut(s)	26, 295, 708
BspDI	ATCGAT	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	34, 120, 278
BspLI	GGNNCC	3 cut(s)	124, 403, 722
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	556, 623
BspT104I	TTCGAA	1 cut(s)	257
BspTNI	GGTCTC	2 cut(s)	30, 416
BssECI	CCNNGG	5 cut(s)	32, 118, 627, 671, 724
BssMI	GATC	3 cut(s)	548, 615, 771
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	671, 724
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	2 cut(s)	138, 750
BstACI	GRCGYC	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	175, 300
BstDEI	CTNAG	4 cut(s)	13, 282, 305, 716
BstDSI	CCRYGG	2 cut(s)	32, 118
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	3 cut(s)	34, 120, 278
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	551, 618, 774
BstMAI	GTCTC	4 cut(s)	30, 106, 285, 416
BstMBI	GATC	3 cut(s)	548, 615, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 183
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	3 cut(s)	34, 120, 278
BstV1I	GCAGC	2 cut(s)	223, 251
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
BsuTUI	ATCGAT	1 cut(s)	221
BtgI	CCRYGG	2 cut(s)	32, 118
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	175, 300
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	122, 401, 668, 691
Cfr42I	CCGCGG	2 cut(s)	35, 121
ClaI	ATCGAT	1 cut(s)	221
CseI	GACGC	2 cut(s)	123, 267
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	3 cut(s)	229, 295, 592
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	4 cut(s)	13, 282, 305, 716
DpnI	GATC	3 cut(s)	550, 617, 773
DpnII	GATC	3 cut(s)	548, 615, 771
Eam1104I	CTCTTC	2 cut(s)	138, 750
EarI	CTCTTC	2 cut(s)	138, 750
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	2 cut(s)	671, 724
Eco147I	AGGCCT	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	2 cut(s)	30, 416
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	165, 356
EcoICRI	GAGCTC	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	2 cut(s)	671, 724
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	2 cut(s)	671, 724
Esp3I	CGTCTC	2 cut(s)	106, 285
FaeI	CATG	3 cut(s)	232, 298, 595
FatI	CATG	3 cut(s)	228, 294, 591
Fnu4HI	GCNGC	4 cut(s)	35, 118, 237, 240
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	4 cut(s)	35, 118, 237, 240
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	4 cut(s)	35, 118, 237, 240
HaeIII	GGCC	6 cut(s)	37, 402, 527, 669, 676, 693
HapII	CCGG	3 cut(s)	22, 344, 629
HgaI	GACGC	2 cut(s)	123, 267
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	232, 298, 595
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	164, 362
HpaII	CCGG	3 cut(s)	22, 344, 629
HphI	GGTGA	2 cut(s)	39, 527
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	56, 163
Hpy188III	TCNNGA	5 cut(s)	143, 344, 554, 644, 769
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	56, 81
HpyAV	CCTTC	4 cut(s)	103, 253, 307, 606
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	3 cut(s)	76, 264, 469
HpyCH4V	TGCA	2 cut(s)	173, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 183
HpyF3I	CTNAG	4 cut(s)	13, 282, 305, 716
HpySE526I	ACGT	3 cut(s)	76, 264, 469
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	232, 298, 595
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	343
KspI	CCGCGG	2 cut(s)	35, 121
Kzo9I	GATC	3 cut(s)	548, 615, 771
Lsp1109I	GCAGC	2 cut(s)	223, 251
MaeII	ACGT	3 cut(s)	76, 264, 469
MalI	GATC	3 cut(s)	550, 617, 773
MboI	GATC	3 cut(s)	548, 615, 771
MboII	GAAGA	7 cut(s)	54, 125, 128, 131, 213, 362, 737
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	627, 765
MluCI	AATT	3 cut(s)	267, 536, 632
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	9 cut(s)	48, 55, 108, 284, 505, 550, 568, 596, 711
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	61
MspA1I	CMGCKG	2 cut(s)	34, 120
MspI	CCGG	3 cut(s)	22, 344, 629
MspR9I	CCNGG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	186
MvnI	CGCG	3 cut(s)	34, 120, 278
MwoI	GCNNNNNNNGC	2 cut(s)	114, 183
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	3 cut(s)	548, 615, 771
NlaIII	CATG	3 cut(s)	232, 298, 595
NlaIV	GGNNCC	3 cut(s)	124, 403, 722
NspI	RCATGY	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	527
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	164, 362
PkrI	GCNGC	4 cut(s)	36, 119, 238, 241
Psp124BI	GAGCTC	1 cut(s)	765
PspN4I	GGNNCC	3 cut(s)	124, 403, 722
PspPI	GGNCC	4 cut(s)	122, 401, 668, 691
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	765
SacII	CCGCGG	2 cut(s)	35, 121
SatI	GCNGC	4 cut(s)	35, 118, 237, 240
Sau3AI	GATC	3 cut(s)	548, 615, 771
Sau96I	GGNCC	4 cut(s)	122, 401, 668, 691
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	627, 765
SfcI	CTRYAG	1 cut(s)	237
Sfr303I	CCGCGG	2 cut(s)	35, 121
SfuI	TTCGAA	1 cut(s)	257
SgrBI	CCGCGG	2 cut(s)	35, 121
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	3 cut(s)	267, 536, 632
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	7 cut(s)	32, 34, 118, 120, 149, 177, 501
SstI	GAGCTC	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	2 cut(s)	671, 724
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	3 cut(s)	79, 267, 472
TaqI	TCGA	6 cut(s)	195, 221, 257, 329, 484, 753
TasI	AATT	3 cut(s)	267, 536, 632
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	37, 120
TfiI	GAWTC	2 cut(s)	164, 362
TseI	GCWGC	2 cut(s)	236, 239
TspDTI	ATGAA	2 cut(s)	207, 495
TspGWI	ACGGA	2 cut(s)	30, 368
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	412, 589
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.