Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005308

Physical Location & Seq

Genomic Coordinates Reverse (-)

8254956 .. 8257779

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAGTGAGAGTTTGATCGCCGGGCTGCGGGCAGAGGTGGTGGCGCTGAAGGCGGAGCTGGATAAGACCCAGGGTTTTAACATGGAGCTGCAGTCGCAGAACGAAAGCCTCTCTCGGAATCTCGCTGCTGCTGAGGCAAAGATTTCAGCTTCTGCCTCTCCTGAACAGAGGGAGACAAATGGAGAGTACCAGAGCCCTAAGTTCAAAGACCTTCAGAAACTCATTGCCAACAAATTAGAACGCTCAGTAGTTCAGAAAGATGCAGTCAATGAAACAAGTCCTCCTGTTAAAGCACCACCTCCTCCGCCACCAAAATCTGCAATTCCTAGAGTTTCCGCCACCCAATGCGGACCACCACCACCACCCCCACCTCCACCATCACTTCGGCTCCGACCCCCGCCCCCACCCCCACTCCAGTCCACTGTGAGAGCAACTGGCGGTACCACTCAGAAGGCTCCAGCACTTGTAGAATTTTATCACTCGCTGAGGAAGCAAGAGGTGAAGAGGGATTCTCCGGAATCTCGAAACCATCTTAAACGGGCAGCTACTAGTGCACATAATAGCATTGTCGGAGAAATTCAAAACCGTTCAGCACATCTTTTAGCTATAAAAGCAGACGTTCAAACAAAAGGAGAGTTCATCAATGACCTTATCCAGAAAGTGCTGGCTGCAGCATATACCGATATAGAAGATGTCCTAAAGTTTGTGGATTGGCTTGATGTTGAACTCTCATCTTTGGCTGATGAACGGGCTGTCCTAAAGCATTTCAAGTGGCCTGAGAGGAAAGCTGATGCCATGCGAGAAGCTGCAATTGAATATCGTGACCTTAAACTGTTAGAAAGTGAGATTTCTTGTTATAAGGATGACACTGACATTCCATGTGCAGCTGCCTTGAAGAAGATGGCTGGCTTATTAGACAAGTCCGAGCGAAGCATACAACGGTTAATTAAGTTAAGAAATTCAGTTATGCGTTCTTATCAGGAATTGAAAATCCCAACTGATTGGATGCTCGATTCAGGGATTGTGAGTAAGATAAAGCGGGCTTCCATGAATCTGGCTAATATTTACATGAAGAGAGTGACGTTGGAGCTTGAATCCATTCGGAATTCAGATAGAGAGTCAAGTCAAGAATCTCTTCTGCTTCAGGGTGTGCATTTTGCATATAGGGCTCACCAGTTTGCCGGGGGTCTCGACTCTGAAACGTTATGTGCTTTCGAAGAAATAAGGCAGCGAGTACCGGGACACTTAGGAGGCTCCCGAGAGCTATTGGCAGGCATAGCATCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.47

Weight (kDa)

8.82

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48280
fragaria_vesca	FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640 FvH4_4g21640
malus_domestica	MD13G1138500.v1.1 MD16G1134400.v1.1
prunus_persica	Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1 Prupe.1G103700_v2.0.a1
pyrus_communis	pycom13g12060 pycom16g11870
rosa_chinensis	RchiOBHm_Chr4g0427871
rosa_laevigata	RLG00000007205
rosa_roxburghii	Rroxscaffold_5G00369520
rosa_rugosa	Rorug04G0220200 Rorug04G0220200
rosa_samantha	Rh4AG277100 Rh4BG282800 Rh4CG298500 Rh4DG279900
rosa_wichuraiana	Rw4G024070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	8 cut(s)	28, 53, 305, 336, 348, 398, 438, 1039
AclI	AACGTT	1 cut(s)	1202
AcsI	RAATTY	4 cut(s)	470, 576, 958, 1105
AcuI	CTGAAG	3 cut(s)	68, 197, 1127
AfaI	GTAC	3 cut(s)	188, 442, 1236
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	9 cut(s)	205, 581, 623, 725, 769, 815, 895, 988, 1094
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	69
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	167, 1193
Alw44I	GTGCAC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	1257
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	1 cut(s)	773
ApaLI	GTGCAC	1 cut(s)	552
ApoI	RAATTY	4 cut(s)	470, 576, 958, 1105
Asp700I	GAANNNNTTC	2 cut(s)	1098, 1134
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	3 cut(s)	22, 1183, 1239
AsuHPI	GGTGA	2 cut(s)	511, 1163
AsuII	TTCGAA	1 cut(s)	1215
AvaI	CYCGRG	1 cut(s)	1257
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	2 cut(s)	197, 1171
Bbv12I	GWGCWC	1 cut(s)	556
BbvCI	CCTCAGC	2 cut(s)	132, 485
BccI	CCATC	3 cut(s)	385, 537, 895
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	3 cut(s)	22, 1183, 1239
BcoDI	GTCTC	2 cut(s)	167, 1193
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	327, 549
BfmI	CTRYAG	2 cut(s)	89, 669
BfoI	RGCGCY	1 cut(s)	47
Bme1390I	CCNGG	4 cut(s)	22, 71, 1183, 1239
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	1257
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	4 cut(s)	389, 442, 456, 1255
BmrFI	CCNGG	4 cut(s)	22, 71, 1183, 1239
BmsI	GCATC	3 cut(s)	250, 781, 996
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
BpmI	CTGGAG	2 cut(s)	398, 441
Bpu10I	CCTNAGC	2 cut(s)	132, 485
Bpu14I	TTCGAA	1 cut(s)	1215
BpuMI	CCSGG	3 cut(s)	22, 1183, 1239
BsaI	GGTCTC	1 cut(s)	1193
BsaJI	CCNNGG	3 cut(s)	69, 70, 1182
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	8 cut(s)	77, 107, 265, 295, 372, 396, 402, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	415, 439, 1174
Bse3DI	GCAATG	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	69, 70, 1182
BseGI	GGATG	2 cut(s)	868, 1011
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	5 cut(s)	123, 258, 461, 476, 768
BseNI	ACTGG	3 cut(s)	415, 439, 1174
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	903
BshFI	GGCC	1 cut(s)	775
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	1257
BsiSI	CCGG	4 cut(s)	21, 515, 1182, 1238
BslFI	GGGAC	1 cut(s)	1254
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	167, 1193
BsmFI	GGGAC	1 cut(s)	1254
BsnI	GGCC	1 cut(s)	775
Bso31I	GGTCTC	1 cut(s)	1193
BsoBI	CYCGRG	1 cut(s)	1257
Bsp119I	TTCGAA	1 cut(s)	1215
Bsp1286I	GDGCHC	3 cut(s)	197, 556, 1171
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	8 cut(s)	28, 53, 305, 336, 348, 398, 438, 1039
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	5 cut(s)	124, 257, 460, 477, 769
BspEI	TCCGGA	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	389, 442, 456, 1255
BspMAI	CTGCAG	2 cut(s)	93, 673
BspT104I	TTCGAA	1 cut(s)	1215
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	1193
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	415, 439, 1174
BssECI	CCNNGG	3 cut(s)	69, 70, 1182
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	4 cut(s)	424, 587, 834, 942
Bst6I	CTCTTC	3 cut(s)	497, 1067, 1140
BstBI	TTCGAA	1 cut(s)	1215
BstC8I	GCNNGC	5 cut(s)	30, 666, 907, 1041, 1273
BstDEI	CTNAG	7 cut(s)	132, 198, 244, 447, 485, 777, 1246
BstF5I	GGATG	2 cut(s)	868, 1011
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	167, 1193
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 94, 134, 490, 551, 611, 1166, 1277
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	20, 69, 1181, 1237
BstSFI	CTRYAG	2 cut(s)	89, 669
BstSLI	GKGCMC	1 cut(s)	556
BstXI	CCANNNNNNTGG	2 cut(s)	1002, 1054
BsuRI	GGCC	1 cut(s)	775
BtsCI	GGATG	2 cut(s)	868, 1011
BtsIMutI	CAGTG	2 cut(s)	420, 867
Cac8I	GCNNGC	5 cut(s)	30, 666, 907, 1041, 1273
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	187, 441, 1235
CviAII	CATG	5 cut(s)	82, 796, 879, 1048, 1069
CviQI	GTAC	3 cut(s)	187, 441, 1235
DdeI	CTNAG	7 cut(s)	132, 198, 244, 447, 485, 777, 1246
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	497, 1067, 1140
EarI	CTCTTC	3 cut(s)	497, 1067, 1140
EciI	GGCGGA	3 cut(s)	68, 294, 325
Eco24I	GRGCYC	2 cut(s)	197, 1171
Eco31I	GGTCTC	1 cut(s)	1193
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	3 cut(s)	68, 197, 1127
Eco88I	CYCGRG	1 cut(s)	1257
EcoRI	GAATTC	1 cut(s)	1105
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	2 cut(s)	197, 1171
FaeI	CATG	5 cut(s)	85, 799, 882, 1051, 1072
FalI	AAGNNNNNCTT	2 cut(s)	1119, 1151
FaqI	GGGAC	1 cut(s)	1254
FatI	CATG	5 cut(s)	81, 795, 878, 1047, 1068
FauI	CCCGC	3 cut(s)	21, 405, 1032
FokI	GGATG	2 cut(s)	875, 1018
FriOI	GRGCYC	2 cut(s)	197, 1171
FspBI	CTAG	2 cut(s)	327, 549
GlaI	GCGC	1 cut(s)	45
GsuI	CTGGAG	2 cut(s)	398, 441
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	775
HapII	CCGG	4 cut(s)	21, 515, 1182, 1238
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	5 cut(s)	85, 799, 882, 1051, 1072
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	9 cut(s)	118, 509, 518, 1013, 1051, 1094, 1118, 1130, 1193
HpaII	CCGG	4 cut(s)	21, 515, 1182, 1238
HphI	GGTGA	2 cut(s)	511, 1163
Hpy166II	GTNNAC	2 cut(s)	420, 554
Hpy188III	TCNNGA	9 cut(s)	161, 515, 522, 655, 821, 980, 1127, 1190, 1257
Hpy8I	GTNNAC	2 cut(s)	420, 554
HpyAV	CCTTC	3 cut(s)	43, 221, 445
HpyCH4III	ACNGT	4 cut(s)	424, 587, 834, 942
HpyCH4IV	ACGT	3 cut(s)	618, 1082, 1202
HpyCH4V	TGCA	9 cut(s)	91, 263, 320, 554, 671, 809, 884, 1153, 1160
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 94, 134, 490, 551, 611, 1166, 1277
HpyF3I	CTNAG	7 cut(s)	132, 198, 244, 447, 485, 777, 1246
HpySE526I	ACGT	3 cut(s)	618, 1082, 1202
Hsp92II	CATG	5 cut(s)	85, 799, 882, 1051, 1072
HspAI	GCGC	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	6 cut(s)	55, 85, 393, 460, 1087, 1259
LweI	GCATC	3 cut(s)	250, 781, 996
MaeI	CTAG	2 cut(s)	327, 549
MaeII	ACGT	3 cut(s)	618, 1082, 1202
MaeIII	GTNAC	2 cut(s)	821, 1078
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	8 cut(s)	514, 701, 907, 910, 1084, 1127, 1229, 1275
MfeI	CAATTG	1 cut(s)	810
MhlI	GDGCHC	3 cut(s)	197, 556, 1171
MluCI	AATT	9 cut(s)	233, 321, 470, 576, 810, 945, 958, 983, 1105
MlyI	GAGTC	2 cut(s)	1127, 1187
MmeI	TCCRAC	3 cut(s)	415, 550, 1065
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	2 cut(s)	1098, 1134
MseI	TTAA	7 cut(s)	78, 288, 534, 828, 944, 948, 953
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	4 cut(s)	21, 515, 1182, 1238
MspR9I	CCNGG	4 cut(s)	22, 71, 1183, 1239
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	8 cut(s)	50, 94, 134, 490, 551, 611, 1166, 1277
NciI	CCSGG	3 cut(s)	22, 1183, 1239
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	5 cut(s)	85, 799, 882, 1051, 1072
NlaIV	GGNNCC	4 cut(s)	389, 442, 456, 1255
NmuCI	GTSAC	2 cut(s)	821, 1078
NspV	TTCGAA	1 cut(s)	1215
PacI	TTAATTAA	1 cut(s)	948
PasI	CCCWGGG	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	1098, 1134
PfeI	GAWTC	7 cut(s)	118, 509, 518, 1013, 1051, 1094, 1130
PleI	GAGTC	2 cut(s)	1126, 1187
PpsI	GAGTC	2 cut(s)	1126, 1187
PsiI	TTATAA	1 cut(s)	858
Psp1406I	AACGTT	1 cut(s)	1202
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	389, 442, 456, 1255
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	2 cut(s)	93, 673
PstNI	CAGNNNCTG	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	3 cut(s)	188, 442, 1236
RsaNI	GTAC	3 cut(s)	187, 441, 1235
SaqAI	TTAA	7 cut(s)	78, 288, 534, 828, 944, 948, 953
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	1127, 1187
ScrFI	CCNGG	4 cut(s)	22, 71, 1183, 1239
SduI	GDGCHC	3 cut(s)	197, 556, 1171
SfaNI	GCATC	3 cut(s)	250, 781, 996
SfcI	CTRYAG	2 cut(s)	89, 669
SfuI	TTCGAA	1 cut(s)	1215
SinI	GGWCC	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	9 cut(s)	233, 321, 470, 576, 810, 945, 958, 983, 1105
SsiI	CCGC	8 cut(s)	28, 53, 305, 336, 348, 398, 438, 1039
SspI	AATATT	1 cut(s)	1063
SspMI	CTAG	2 cut(s)	327, 549
StyD4I	CCNGG	4 cut(s)	20, 69, 1181, 1237
TaaI	ACNGT	4 cut(s)	424, 587, 834, 942
TaiI	ACGT	3 cut(s)	621, 1085, 1205
TaqI	TCGA	4 cut(s)	523, 1011, 1191, 1215
TasI	AATT	9 cut(s)	233, 321, 470, 576, 810, 945, 958, 983, 1105
TfiI	GAWTC	7 cut(s)	118, 509, 518, 1013, 1051, 1094, 1130
Tru1I	TTAA	7 cut(s)	78, 288, 534, 828, 944, 948, 953
Tru9I	TTAA	7 cut(s)	78, 288, 534, 828, 944, 948, 953
TscAI	CASTG	2 cut(s)	427, 874
TseFI	GTSAC	2 cut(s)	821, 1078
Tsp45I	GTSAC	2 cut(s)	821, 1078
TspDTI	ATGAA	5 cut(s)	285, 628, 759, 1064, 1085
TspRI	CASTG	2 cut(s)	427, 874
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	4 cut(s)	470, 576, 958, 1105
XmnI	GAANNNNTTC	2 cut(s)	1098, 1134
XspI	CTAG	2 cut(s)	327, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.