pycom16g13750

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014068
Physical Location & Seq
Reverse (-)
9814062 .. 9815813
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGGGCAGGATTCCGATTTGAAATTCCAGCTTGTGACTGAGATTTGCTCCATTTCCACGCTTGCCATTGCCTGCTCTCACAGGCATGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCCCCGTTCATTCGCCGTCTTTCGTCGATTGGTATCGCCTTCTTAGAGTACCTTTACAACTTCATCCAGATAAAAACAAGCACCCAAAAGCTGAAATTGCATTCAAGCTTGTTTCTGAGGCATATTCATGTCTCTCAGATACTGCAAAAAGAAGAGTTTTTGACTTGGAGAGATGGAGGAAGTTCTGCTTTGATTGTGGCACAATCCCCTACACGACAACCCACCACAACTCTCCCAGCACTGCCAATCCCGGTCCTTCTTCACACCACAAGCATTGCAATCCCACTAATCCAAGGCCTTGCAAAGTAATCAAGGGACTGAAAGTTATCAGCAGCAGATTCAGAGAGGAGGCAAGAGTGATAGAAAACTGCTTGAAGGCCAATGCAGCTGCAGGAAAACAATCCTCCTCACTGTTTAGTCCCGCTGCTGCTGCTTTTGATGTGTTTCATTGCAGGTTCCCAAAAGAATCACCTGTTTTCAATCCATCTGAACATAACGTTCAGGGATACCCTCATCTTCGGGCTCGAATATACGAAAAACCGAAGAAGTTTTGGCAGCTGAGAGCAGGGCATCACGTGGTGAATTATGAGCAGGGGAGAGCTGGTTACGATTCTCCAGTGTTTGAGGTCGGATCAGATAGAGGAATGTTTAAGAGTAGGTCTACTTGTGTTCGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

265

Amino Acids

29.6

Weight (kDa)

9.52

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 56 - 93 1.3e-10 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccI GTMKAC 1 cut(s) 776
AciI CCGC 2 cut(s) 93, 537
AclI AACGTT 1 cut(s) 612
AclWI GGATC 1 cut(s) 754
AcsI RAATTY 1 cut(s) 23
AcvI CACGTG 1 cut(s) 691
AdeI CACNNNGTG 1 cut(s) 694
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 4 cut(s) 22, 220, 490, 595
AluBI AGCT 6 cut(s) 31, 206, 223, 503, 673, 716
AluI AGCT 6 cut(s) 31, 206, 223, 503, 673, 716
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 754
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 2 cut(s) 410, 492
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 576, 706
AvaII GGWCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 640
BbrPI CACGTG 1 cut(s) 691
BccI CCATC 2 cut(s) 282, 607
BceAI ACGGC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 558
BfuI GTATCC 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bse1I ACTGG 1 cut(s) 731
Bse3DI GCAATG 3 cut(s) 66, 388, 562
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 178
BseJI GATNNNNATC 1 cut(s) 147
BseMI GCAATG 3 cut(s) 66, 388, 562
BseMII CTCAG 4 cut(s) 30, 222, 264, 665
BseNI ACTGG 1 cut(s) 731
BseRI GAGGAG 2 cut(s) 476, 511
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 2 cut(s) 412, 494
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 2 cut(s) 444, 519
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 444, 519
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 412, 494
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 1 cut(s) 746
BspACI CCGC 2 cut(s) 93, 537
BspANI GGCC 2 cut(s) 412, 494
BspCNI CTCAG 4 cut(s) 31, 223, 263, 666
BspHI TCATGA 1 cut(s) 791
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 754
BsrDI GCAATG 3 cut(s) 66, 388, 562
BsrI ACTGG 1 cut(s) 731
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 691
BstC8I GCNNGC 2 cut(s) 63, 73
BstDEI CTNAG 5 cut(s) 39, 158, 231, 250, 674
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 1 cut(s) 749
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 504
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 412, 494
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 354, 524, 738
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 63, 73
CaiI CAGNNNCTG 1 cut(s) 257
CciI TCATGA 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 371, 406
CviAII CATG 3 cut(s) 86, 243, 792
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 5 cut(s) 39, 158, 231, 250, 674
DpnI GATC 1 cut(s) 748
DpnII GATC 1 cut(s) 746
DraIII CACNNNGTG 1 cut(s) 694
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 407
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 368
Eco72I CACGTG 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 3 cut(s) 89, 246, 795
FaiI YATR 7 cut(s) 87, 238, 244, 609, 646, 702, 793
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 2 cut(s) 444, 519
FatI CATG 3 cut(s) 85, 242, 791
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 776
FokI GGATG 1 cut(s) 165
FriOI GRGCYC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 2 cut(s) 412, 494
HapII CCGG 1 cut(s) 366
Hin1II CATG 3 cut(s) 89, 246, 795
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 4 cut(s) 11, 453, 581, 725
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 576, 706
Hpy166II GTNNAC 1 cut(s) 777
Hpy188I TCNGA 7 cut(s) 16, 232, 253, 458, 604, 746, 751
Hpy188III TCNNGA 2 cut(s) 182, 792
Hpy8I GTNNAC 1 cut(s) 777
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 164, 381, 484
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4IV ACGT 2 cut(s) 612, 690
HpyCH4V TGCA 7 cut(s) 215, 260, 393, 417, 500, 506, 567
HpyF3I CTNAG 5 cut(s) 39, 158, 231, 250, 674
HpySE526I ACGT 2 cut(s) 612, 690
Hsp92II CATG 3 cut(s) 89, 246, 795
Kzo9I GATC 1 cut(s) 746
LmnI GCTCC 1 cut(s) 53
LweI GCATC 1 cut(s) 694
MaeII ACGT 2 cut(s) 612, 690
MaeIII GTNAC 2 cut(s) 34, 719
MalI GATC 1 cut(s) 748
MboI GATC 1 cut(s) 746
MboII GAAGA 4 cut(s) 279, 366, 623, 670
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 3 cut(s) 23, 210, 697
MmeI TCCRAC 1 cut(s) 724
MnlI CCTC 9 cut(s) 226, 285, 454, 457, 529, 532, 636, 733, 749
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 2 cut(s) 84, 241
MspA1I CMGCKG 4 cut(s) 93, 503, 539, 673
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 746
NlaIII CATG 3 cut(s) 89, 246, 795
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 1 cut(s) 34
PagI TCATGA 1 cut(s) 791
PceI AGGCCT 1 cut(s) 412
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 11, 453, 581, 725
PmaCI CACGTG 1 cut(s) 691
PmlI CACGTG 1 cut(s) 691
Ppu21I YACGTR 1 cut(s) 691
Psp1406I AACGTT 1 cut(s) 612
PspCI CACGTG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 1 cut(s) 368
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 257
PvuII CAGCTG 2 cut(s) 503, 673
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 2 cut(s) 84, 241
SaqAI TTAA 1 cut(s) 765
Sau3AI GATC 1 cut(s) 746
Sau96I GGNCC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 84, 241
Sse9I AATT 3 cut(s) 23, 210, 697
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 2 cut(s) 93, 537
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 528
TaiI ACGT 2 cut(s) 615, 693
TaqI TCGA 2 cut(s) 141, 640
TasI AATT 3 cut(s) 23, 210, 697
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 4 cut(s) 11, 453, 581, 725
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 3 cut(s) 361, 531, 738
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 5 cut(s) 113, 167, 231, 551, 780
TspRI CASTG 3 cut(s) 361, 531, 738
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.