pycom16g14020

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
10030461 .. 10033410
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1539 bp
ATGATGATCGCTAGGCGGCTCTGGCATAAGCGGACTTTGGTCAACGGTGGCCGGTGGCTCTGTCCGTACACCTCTTCAGCTCCGTCGCCGGCGGCGGTGCATTCTTCCCACCACTCTCCGTTTCGAGTCTCCTCTTCCGATCTCGTTGCGTTCTCTACTGCCGCTTCCACCTGGTTCTGCTTGGCCGATCAGGTATCCATTCGTAGAATTGCGTGTAATGTGAATGGGAGGTGGTTTTCAAGTGAGGCAGTGGCTGATGTTGCAGCAGGGGTTAATGGTAATGGTATAGTTGATGTACCGTTGGCTCAAACCGGAGAAGGCATTGCCGAATGCGAGCTACTCAAATGGTTTGTGCAGGAGGGGGATCAAGTTGACGAATTTCAGCCACTTTGTGAAGTTCAAAGTGACAAAGCAACCATCGAAATAACAAGCCGTTATCAAGGGAAAGTTTCTCAGCTTCTCTACATTCCTGGTGACATCGTCAAGGTTGGAGAAATTCTTTTAAAGATGGCCGTCGAGGAATCTCACGTTCCAAAGCAGATATTTGAGAATTTGGAAATCACTAAGTCACTAGATTCTGAGCTTAACACACATAACATAGGCGGAGTTTTGTCTACACCTCCTGTTCGGAGCCTTGCAAAGCAATATGATATAGATATAAATGAAGTCTCTGGAACCGGTAAAGATGGGAGAGTGTTACGAGAAGATGTCCTTAAATATGCTGCCCAGAAGGGAATCGTTGAAGTTCCTTCTGCCTCCTTGAGTGCTAGTCCTGAGAAAGCTTTGGGAAGAAAAGAGACTTGTGCACATACATCAGCTGAATCGGGATGGAATTATGAGGATACGACAGTTACCCTGAGGGGATTCCAGCGAAGAATGGTTACGTCAATGAGCATGGCTGCAAAAGTTCCACATTTTCATTATGTTGAGGATATAAAGTGTGATGCACTTGTGGAGCTGAAAAATTCTTTCCAAAGTAATAACACCGATTCCAATGTCAAGCACACTTTTCTTCCATTATTGATAAAGACTCTCTCAGTGGCCATGAGCAAATATCCGTTGATGAATAGTAGCTTCAATGAAGAGTCACTCGAGGTCATCCTCAAAGGTTCGCACAATATCGGAATTGCCATGGCTACTCCATATGGTCTGGTTGTGCCAATCATAAAGAACGTTCAATCTCTTTCCATTTTGGAGATAACAAAGGAACTTTCACGGTTACAACAATTGGCATTGGAAAACAAGCTCAAGCCTGAAGAGATATCTGGTGGAACAATAACTTTAAGCAACATTGGAGCAATCGGTGGGAAATATGGTTCGCCTCTTCTGAACTTGCCTGAGGTTGCCATTATTGCAATTGGGCGAATTCAGAAGGTTCCACGATTTGCAGATGACGGAGGTGTATATCCTGTCTCAGTTATGACGGTCAATATAGGCGCAGATCACAGAGTGCTGGATGGAGCAACTGTTGCCAGGTTCTGCAACGAGTGGAAACAATATATAGAGAATCCAGAGCTGCTCATGTTGCATATGAGATAG

Protein Analysis

513

Amino Acids

56.1

Weight (kDa)

6.15

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 99 - 170 2.3e-17 Biotin-requiring enzyme
E3_binding PF02817 203 - 238 2.7e-13 e3 binding domain
2-oxoacid_dh PF00198 280 - 509 2.4e-80 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 614
AciI CCGC 6 cut(s) 16, 31, 92, 95, 162, 603
AclI AACGTT 1 cut(s) 1173
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 4 cut(s) 49, 183, 510, 1041
AcsI RAATTY 5 cut(s) 377, 495, 550, 964, 1365
AcuI CTGAAG 2 cut(s) 60, 1275
AdeI CACNNNGTG 2 cut(s) 392, 1450
AfaI GTAC 2 cut(s) 68, 297
AgeI ACCGGT 1 cut(s) 677
AgsI TTSAA 5 cut(s) 240, 401, 743, 1078, 1178
AjnI CCWGG 3 cut(s) 170, 469, 1472
AloI GAACNNNNNNTCC 2 cut(s) 1300, 1332
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 4 cut(s) 133, 673, 791, 1417
Alw44I GTGCAC 1 cut(s) 804
AlwI GGATC 1 cut(s) 372
AlwNI CAGNNNCTG 2 cut(s) 254, 1479
Ama87I CYCGRG 1 cut(s) 1091
AoxI GGCC 4 cut(s) 49, 183, 510, 1041
ApaLI GTGCAC 1 cut(s) 804
ApeKI GCWGC 4 cut(s) 263, 722, 899, 1516
ApoI RAATTY 5 cut(s) 377, 495, 550, 964, 1365
AsiGI ACCGGT 1 cut(s) 677
AspLEI GCGC 1 cut(s) 1439
AsuHPI GGTGA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 1091
AxyI CCTNAGG 2 cut(s) 857, 1338
BaeGI GKGCMC 1 cut(s) 808
BaeI ACNNNNGTAYC 2 cut(s) 834, 867
BalI TGGCCA 1 cut(s) 1043
BarI GAAGNNNNNNTAC 2 cut(s) 865, 897
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 4 cut(s) 275, 709, 886, 1503
BccI CCATC 5 cut(s) 425, 502, 680, 822, 1451
BceAI ACGGC 2 cut(s) 417, 497
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 3 cut(s) 172, 471, 1474
BciVI GTATCC 2 cut(s) 205, 835
BcoDI GTCTC 4 cut(s) 133, 673, 791, 1417
BfaI CTAG 3 cut(s) 12, 572, 768
BfuI GTATCC 2 cut(s) 205, 835
BisI GCNGC 7 cut(s) 17, 93, 162, 264, 723, 900, 1517
BlsI GCNGC 7 cut(s) 18, 94, 163, 265, 724, 901, 1518
Bme1390I CCNGG 3 cut(s) 172, 471, 1474
BmeT110I CYCGRG 1 cut(s) 1091
BmiI GGNNCC 3 cut(s) 632, 676, 1377
BmrFI CCNGG 3 cut(s) 172, 471, 1474
BmsI GCATC 1 cut(s) 934
BoxI GACNNNNGTC 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 781, 1232
BsaJI CCNNGG 1 cut(s) 1131
BsaWI WCCGGW 2 cut(s) 311, 677
BsaXI ACNNNNNCTCC 2 cut(s) 1452, 1482
Bse118I RCCGGY 3 cut(s) 51, 88, 677
Bse21I CCTNAGG 2 cut(s) 857, 1338
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 3 cut(s) 172, 471, 1474
BseDI CCNNGG 1 cut(s) 1131
BseGI GGATG 3 cut(s) 833, 1098, 1462
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 7 cut(s) 467, 570, 765, 848, 1050, 1329, 1428
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 4 cut(s) 275, 709, 886, 1503
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 4 cut(s) 51, 185, 512, 1043
BshTI ACCGGT 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 1091
BsiSI CCGG 4 cut(s) 52, 89, 312, 678
BsmAI GTCTC 4 cut(s) 133, 673, 791, 1417
BsmI GAATGC 2 cut(s) 100, 335
BsnI GGCC 4 cut(s) 51, 185, 512, 1043
BsoBI CYCGRG 1 cut(s) 1091
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 5 cut(s) 6, 139, 187, 364, 1441
Bsp19I CCATGG 1 cut(s) 1131
BspACI CCGC 6 cut(s) 16, 31, 92, 95, 162, 603
BspANI GGCC 4 cut(s) 51, 185, 512, 1043
BspCNI CTCAG 7 cut(s) 466, 571, 766, 849, 1049, 1330, 1427
BspLI GGNNCC 3 cut(s) 632, 676, 1377
BspPI GGATC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 3 cut(s) 51, 88, 677
BssAI RCCGGY 3 cut(s) 51, 88, 677
BssECI CCNNGG 1 cut(s) 1131
BssMI GATC 5 cut(s) 6, 139, 187, 364, 1441
BssT1I CCWWGG 1 cut(s) 1131
Bst2UI CCWGG 3 cut(s) 172, 471, 1474
Bst4CI ACNGT 6 cut(s) 47, 300, 850, 1218, 1426, 1468
Bst6I CTCTTC 5 cut(s) 79, 139, 1077, 1251, 1329
BstAPI GCANNNNNTGC 1 cut(s) 1469
BstC8I GCNNGC 2 cut(s) 90, 335
BstDEI CTNAG 8 cut(s) 453, 564, 579, 774, 857, 1036, 1338, 1414
BstDSI CCRYGG 1 cut(s) 1131
BstF5I GGATG 3 cut(s) 833, 1098, 1462
BstHHI GCGC 1 cut(s) 1439
BstKTI GATC 5 cut(s) 9, 142, 190, 367, 1444
BstMAI GTCTC 4 cut(s) 133, 673, 791, 1417
BstMBI GATC 5 cut(s) 6, 139, 187, 364, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 22, 260, 1352, 1469, 1525
BstNI CCWGG 3 cut(s) 172, 471, 1474
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 170, 469, 1472
BstSLI GKGCMC 1 cut(s) 808
BstV1I GCAGC 4 cut(s) 275, 709, 886, 1503
Bsu36I CCTNAGG 2 cut(s) 857, 1338
BsuI GTATCC 2 cut(s) 205, 835
BsuRI GGCC 4 cut(s) 51, 185, 512, 1043
BtgI CCRYGG 1 cut(s) 1131
BtsCI GGATG 3 cut(s) 833, 1098, 1462
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 1044
Cac8I GCNNGC 2 cut(s) 90, 335
CaiI CAGNNNCTG 2 cut(s) 254, 1479
CfoI GCGC 1 cut(s) 1439
Cfr10I RCCGGY 3 cut(s) 51, 88, 677
CsiI ACCWGGT 1 cut(s) 170
Csp6I GTAC 2 cut(s) 67, 296
CspAI ACCGGT 1 cut(s) 677
CviAII CATG 4 cut(s) 895, 1045, 1132, 1522
CviQI GTAC 2 cut(s) 67, 296
DdeI CTNAG 8 cut(s) 453, 564, 579, 774, 857, 1036, 1338, 1414
DpnI GATC 5 cut(s) 8, 141, 189, 366, 1443
DpnII GATC 5 cut(s) 6, 139, 187, 364, 1441
DraI TTTAAA 1 cut(s) 504
DraIII CACNNNGTG 2 cut(s) 392, 1450
EaeI YGGCCR 4 cut(s) 49, 183, 510, 1041
Eam1104I CTCTTC 5 cut(s) 79, 139, 1077, 1251, 1329
EarI CTCTTC 5 cut(s) 79, 139, 1077, 1251, 1329
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 1131
Eco32I GATATC 1 cut(s) 1263
Eco57I CTGAAG 2 cut(s) 60, 1275
Eco81I CCTNAGG 2 cut(s) 857, 1338
Eco88I CYCGRG 1 cut(s) 1091
EcoRI GAATTC 1 cut(s) 1365
EcoRII CCWGG 3 cut(s) 170, 469, 1472
EcoRV GATATC 1 cut(s) 1263
EcoT14I CCWWGG 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 1131
FaeI CATG 4 cut(s) 898, 1048, 1135, 1525
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FatI CATG 4 cut(s) 894, 1044, 1131, 1521
FauNDI CATATG 2 cut(s) 1144, 1530
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 7 cut(s) 17, 93, 162, 264, 723, 900, 1517
FokI GGATG 3 cut(s) 840, 1085, 1469
Fsp4HI GCNGC 7 cut(s) 17, 93, 162, 264, 723, 900, 1517
FspBI CTAG 3 cut(s) 12, 572, 768
GlaI GCGC 1 cut(s) 1438
GluI GCNGC 7 cut(s) 17, 93, 162, 264, 723, 900, 1517
HaeIII GGCC 4 cut(s) 51, 185, 512, 1043
HapII CCGG 4 cut(s) 52, 89, 312, 678
HhaI GCGC 1 cut(s) 1439
Hin1II CATG 4 cut(s) 898, 1048, 1135, 1525
Hin6I GCGC 1 cut(s) 1437
HinP1I GCGC 1 cut(s) 1437
HincII GTYRAC 2 cut(s) 43, 373
HindII GTYRAC 2 cut(s) 43, 373
HindIII AAGCTT 1 cut(s) 780
HpaII CCGG 4 cut(s) 52, 89, 312, 678
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 5 cut(s) 43, 69, 373, 615, 806
Hpy188I TCNGA 6 cut(s) 139, 580, 630, 1124, 1329, 1371
Hpy188III TCNNGA 4 cut(s) 672, 773, 825, 1511
Hpy8I GTNNAC 5 cut(s) 43, 69, 373, 615, 806
Hpy99I CGWCG 2 cut(s) 88, 518
HpyAV CCTTC 4 cut(s) 311, 724, 759, 1366
HpyCH4III ACNGT 6 cut(s) 47, 300, 850, 1218, 1426, 1468
HpyCH4IV ACGT 3 cut(s) 528, 884, 1173
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 260, 1352, 1469, 1525
HpyF3I CTNAG 8 cut(s) 453, 564, 579, 774, 857, 1036, 1338, 1414
HpySE526I ACGT 3 cut(s) 528, 884, 1173
Hsp92II CATG 4 cut(s) 898, 1048, 1135, 1525
HspAI GCGC 1 cut(s) 1437
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 5 cut(s) 6, 139, 187, 364, 1441
LmnI GCTCC 5 cut(s) 85, 630, 955, 1295, 1460
Lsp1109I GCAGC 4 cut(s) 275, 709, 886, 1503
LweI GCATC 1 cut(s) 934
MabI ACCWGGT 1 cut(s) 170
MaeI CTAG 3 cut(s) 12, 572, 768
MaeII ACGT 3 cut(s) 528, 884, 1173
MaeIII GTNAC 8 cut(s) 404, 473, 567, 696, 850, 880, 1086, 1218
MalI GATC 5 cut(s) 8, 141, 189, 366, 1443
MboI GATC 5 cut(s) 6, 139, 187, 364, 1441
MfeI CAATTG 2 cut(s) 1226, 1356
MhlI GDGCHC 1 cut(s) 808
MlsI TGGCCA 1 cut(s) 1043
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 3 cut(s) 135, 1024, 1094
MmeI TCCRAC 1 cut(s) 469
Mox20I TGGCCA 1 cut(s) 1043
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 5 cut(s) 273, 503, 585, 714, 1283
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 4 cut(s) 52, 89, 312, 678
MspR9I CCNGG 3 cut(s) 172, 471, 1474
MunI CAATTG 2 cut(s) 1226, 1356
Mva1269I GAATGC 2 cut(s) 100, 335
MvaI CCWGG 3 cut(s) 172, 471, 1474
MwoI GCNNNNNNNGC 5 cut(s) 22, 260, 1352, 1469, 1525
NaeI GCCGGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 1131
NdeI CATATG 2 cut(s) 1144, 1530
NdeII GATC 5 cut(s) 6, 139, 187, 364, 1441
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 4 cut(s) 898, 1048, 1135, 1525
NlaIV GGNNCC 3 cut(s) 632, 676, 1377
NmuCI GTSAC 4 cut(s) 404, 473, 567, 1086
PaeR7I CTCGAG 1 cut(s) 1091
PctI GAATGC 2 cut(s) 100, 335
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 7 cut(s) 521, 575, 735, 821, 864, 989, 1507
PflFI GACNNNGTC 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 677
PkrI GCNGC 7 cut(s) 18, 94, 163, 265, 724, 901, 1518
PleI GAGTC 3 cut(s) 134, 1024, 1093
PpsI GAGTC 3 cut(s) 134, 1024, 1093
PshAI GACNNNNGTC 1 cut(s) 38
Psp1406I AACGTT 1 cut(s) 1173
Psp6I CCWGG 3 cut(s) 170, 469, 1472
PspGI CCWGG 3 cut(s) 170, 469, 1472
PspN4I GGNNCC 3 cut(s) 632, 676, 1377
PspXI VCTCGAGB 1 cut(s) 1091
PstNI CAGNNNCTG 2 cut(s) 254, 1479
PsyI GACNNNGTC 1 cut(s) 479
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 2 cut(s) 68, 297
RsaNI GTAC 2 cut(s) 67, 296
SaqAI TTAA 5 cut(s) 273, 503, 585, 714, 1283
SatI GCNGC 7 cut(s) 17, 93, 162, 264, 723, 900, 1517
Sau3AI GATC 5 cut(s) 6, 139, 187, 364, 1441
SchI GAGTC 3 cut(s) 135, 1024, 1094
ScrFI CCNGG 3 cut(s) 172, 471, 1474
SduI GDGCHC 1 cut(s) 808
SexAI ACCWGGT 1 cut(s) 170
SfaNI GCATC 1 cut(s) 934
Sfr274I CTCGAG 1 cut(s) 1091
SgrAI CRCCGGYG 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 1091
SmlI CTYRAG 3 cut(s) 760, 1091, 1247
SmoI CTYRAG 3 cut(s) 760, 1091, 1247
SsiI CCGC 6 cut(s) 16, 31, 92, 95, 162, 603
SspMI CTAG 3 cut(s) 12, 572, 768
StyD4I CCNGG 3 cut(s) 170, 469, 1472
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 6 cut(s) 47, 300, 850, 1218, 1426, 1468
TaiI ACGT 3 cut(s) 531, 887, 1176
TaqI TCGA 4 cut(s) 124, 420, 516, 1092
TauI GCSGC 3 cut(s) 19, 95, 164
TfiI GAWTC 7 cut(s) 521, 575, 735, 821, 864, 989, 1507
Tru1I TTAA 5 cut(s) 273, 503, 585, 714, 1283
Tru9I TTAA 5 cut(s) 273, 503, 585, 714, 1283
TscAI CASTG 2 cut(s) 255, 1044
TseFI GTSAC 4 cut(s) 404, 473, 567, 1086
TseI GCWGC 4 cut(s) 263, 722, 899, 1516
Tsp45I GTSAC 4 cut(s) 404, 473, 567, 1086
TspDTI ATGAA 4 cut(s) 678, 908, 1079, 1095
TspGWI ACGGA 5 cut(s) 54, 72, 108, 1047, 1410
TspRI CASTG 2 cut(s) 255, 1044
Tth111I GACNNNGTC 1 cut(s) 479
VneI GTGCAC 1 cut(s) 804
XapI RAATTY 5 cut(s) 377, 495, 550, 964, 1365
XhoI CTCGAG 1 cut(s) 1091
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 3 cut(s) 12, 572, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.