Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008359

Physical Location & Seq

Genomic Coordinates Forward (+)

10300356 .. 10301692

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTATAAATTACGTTCAACGCATTGTGTCGGACTCTCATGTCACTGGTCTAGCCCGAGCCCAAATCCCGTAACGGGTCCAGAACAATACACGAGCCGAACCGCGCAAAAACCCCTTCAGATTTTAGAAAACCCTAACGAACGCAGAGCTCTTCACTTCCAGCAGCTGCCGCCACCACTGCGACTTCCCCAGAGGGTTGTGATCTCGATCGCCAAGATGCAAAACGAGGAAGGAATCATCACCGAGCTCTACATCCCGAGGAAATGCTCGGCGACGAACAGGCTGATCACCTCCAAGGACCATGCTTCTGTTCAGATCAACGTTGGGCATTTGGATGAGCATGGCATCTACACTGGCCAATTCTCCACCTTCGCTCTATGCGGCTACGTCCGTGCTCAGGGAGAGGCCGACAGTGGTTTGGACCGACTCTGGCAGAAGAAGAAAACTGAAGTTAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

9.3

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	73 - 148	3.5e-36	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53890 AT3G53890 AT5G27700
fragaria_vesca	FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_4g17990 FvH4_6g28030 FvH4_6g28030
malus_domestica	MD11G1125000.v1.1 MD13G1168900.v1.1 MD16G1170000.v1.1
prunus_persica	Prupe.1G137200_v2.0.a1 Prupe.6G093700_v2.0.a1
pyrus_communis	pycom13g14450 pycom16g14260
rosa_chinensis	RchiOBHm_Chr4g0422191
rosa_multiflora	Rmu_sc0000801.1_g000004 Rmu_sc0003930.1_g000011
rosa_roxburghii	Rroxscaffold_5G00364310
rosa_rugosa	Rorug04G0178400
rosa_samantha	Rh4CG252500
rosa_wichuraiana	Rw4G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	102, 170, 381
AclI	AACGTT	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	74, 397
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	3 cut(s)	149, 166, 247
AluI	AGCT	3 cut(s)	149, 166, 247
Alw21I	GWGCWC	3 cut(s)	151, 249, 397
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	2 cut(s)	55, 256
AoxI	GGCC	2 cut(s)	355, 405
ApeKI	GCWGC	2 cut(s)	163, 166
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	77, 298, 421
AsuHPI	GGTGA	2 cut(s)	232, 280
AvaI	CYCGRG	2 cut(s)	55, 256
AvaII	GGWCC	3 cut(s)	77, 298, 421
BalI	TGGCCA	1 cut(s)	357
BanII	GRGCYC	3 cut(s)	62, 151, 249
BauI	CACGAG	1 cut(s)	91
Bbv12I	GWGCWC	3 cut(s)	151, 249, 397
BbvI	GCAGC	2 cut(s)	153, 175
BclI	TGATCA	1 cut(s)	285
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	4 cut(s)	164, 167, 170, 382
BlsI	GCNGC	4 cut(s)	165, 168, 171, 383
Bme18I	GGWCC	3 cut(s)	77, 298, 421
BmeT110I	CYCGRG	2 cut(s)	55, 256
BmgT120I	GGNCC	3 cut(s)	77, 298, 421
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	207, 354
Bpu10I	CCTNAGC	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	257, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 397
Bse1I	ACTGG	2 cut(s)	50, 358
Bse8I	GATNNNNATC	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	257, 294
BseGI	GGATG	2 cut(s)	252, 340
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	74, 397
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	50, 358
BseXI	GCAGC	2 cut(s)	153, 175
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	357, 407
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	3 cut(s)	151, 249, 397
BsiHKCI	CYCGRG	2 cut(s)	55, 256
BslI	CCNNNNNNNGG	2 cut(s)	74, 397
BsnI	GGCC	2 cut(s)	357, 407
BsoBI	CYCGRG	2 cut(s)	55, 256
Bsp1286I	GDGCHC	4 cut(s)	62, 151, 249, 397
Bsp143I	GATC	4 cut(s)	201, 207, 285, 315
BspACI	CCGC	3 cut(s)	102, 170, 381
BspANI	GGCC	2 cut(s)	357, 407
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	50, 358
BssECI	CCNNGG	2 cut(s)	257, 294
BssMI	GATC	4 cut(s)	201, 207, 285, 315
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	413, 462
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	252, 340
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	4 cut(s)	204, 210, 288, 318
BstMBI	GATC	4 cut(s)	201, 207, 285, 315
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 178
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	153, 175
BsuRI	GGCC	2 cut(s)	357, 407
BtsCI	GGATG	2 cut(s)	252, 340
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	4 cut(s)	43, 176, 351, 418
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	77, 298, 421
CviAII	CATG	3 cut(s)	39, 302, 341
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	4 cut(s)	203, 209, 287, 317
DpnII	GATC	4 cut(s)	201, 207, 285, 315
DrdI	GACNNNNNNGTC	1 cut(s)	39
DseDI	GACNNNNNNGTC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Ecl136II	GAGCTC	2 cut(s)	149, 247
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	3 cut(s)	62, 151, 249
Eco47I	GGWCC	3 cut(s)	77, 298, 421
Eco53kI	GAGCTC	2 cut(s)	149, 247
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	55, 256
EcoICRI	GAGCTC	2 cut(s)	149, 247
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	3 cut(s)	62, 151, 249
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	42, 305, 344
FaiI	YATR	5 cut(s)	6, 40, 303, 342, 379
FatI	CATG	3 cut(s)	38, 301, 340
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	164, 167, 170, 382
FokI	GGATG	2 cut(s)	239, 347
FriOI	GRGCYC	3 cut(s)	62, 151, 249
Fsp4HI	GCNGC	4 cut(s)	164, 167, 170, 382
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	4 cut(s)	164, 167, 170, 382
HaeIII	GGCC	2 cut(s)	357, 407
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	42, 305, 344
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	33, 234, 426
HphI	GGTGA	2 cut(s)	232, 280
Hpy188I	TCNGA	3 cut(s)	32, 120, 315
Hpy188III	TCNNGA	3 cut(s)	80, 205, 256
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	125, 224, 379
HpyCH4III	ACNGT	2 cut(s)	413, 462
HpyCH4IV	ACGT	3 cut(s)	13, 321, 387
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 178
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	3 cut(s)	13, 321, 387
Hsp92II	CATG	3 cut(s)	42, 305, 344
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	201, 207, 285, 315
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	8 cut(s)	31, 93, 173, 203, 265, 339, 383, 415
Lsp1109I	GCAGC	2 cut(s)	153, 175
LweI	GCATC	2 cut(s)	207, 354
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	13, 321, 387
MaeIII	GTNAC	2 cut(s)	41, 70
MalI	GATC	4 cut(s)	203, 209, 287, 317
MboI	GATC	4 cut(s)	201, 207, 285, 315
MboII	GAAGA	3 cut(s)	143, 448, 451
MhlI	GDGCHC	4 cut(s)	62, 151, 249, 397
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	2 cut(s)	8, 359
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	27, 420
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	186, 220, 252, 301, 397
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	169, 178
NdeII	GATC	4 cut(s)	201, 207, 285, 315
NlaIII	CATG	3 cut(s)	42, 305, 344
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	165, 168, 171, 383
Ple19I	CGATCG	1 cut(s)	210
PleI	GAGTC	2 cut(s)	27, 420
PpsI	GAGTC	2 cut(s)	27, 420
Psp124BI	GAGCTC	2 cut(s)	151, 249
Psp1406I	AACGTT	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	77, 298, 421
PstNI	CAGNNNCTG	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	2 cut(s)	151, 249
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	4 cut(s)	164, 167, 170, 382
Sau3AI	GATC	4 cut(s)	201, 207, 285, 315
Sau96I	GGNCC	3 cut(s)	77, 298, 421
SchI	GAGTC	2 cut(s)	27, 420
SduI	GDGCHC	4 cut(s)	62, 151, 249, 397
SetI	ASST	8 cut(s)	16, 151, 168, 249, 293, 324, 371, 390
SfaNI	GCATC	2 cut(s)	207, 354
SinI	GGWCC	3 cut(s)	77, 298, 421
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	8, 359
SsiI	CCGC	3 cut(s)	102, 170, 381
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	2 cut(s)	151, 249
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	413, 462
TaiI	ACGT	3 cut(s)	16, 324, 390
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	8, 359
TauI	GCSGC	2 cut(s)	172, 384
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	4 cut(s)	50, 183, 358, 418
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	163, 166
Tsp45I	GTSAC	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	4 cut(s)	50, 183, 358, 418
VpaK11BI	GGWCC	3 cut(s)	77, 298, 421
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.