Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

10967867 .. 10970374

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACTAGGGTTTGCCTTCACCTCCTCCTCCTCTTCTTCTTCCTGCTCTCAATCTGCTCCACCCCCTCTTCTGCTTCCACCTTCACCGTCAATCCGTCCAAAGTCAAACAGATCTCATGGAACCCTAGAGCTTTCGTCTACGAAGGTCTGCTGACGGACGCCGAGTGCGATCACTTGATCTCCATCGCGAAATCGGAGCTGAAGAGATCCGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTCCGGACCAGCTCCGGAATGTTCATTCCCAAGGCCAAGGATCCTATTGTTGCTGGTATTGAGGCCAAGCTTGCAACATGGACATTTCTTCCAAAAGAAAATGGTGAAGACATACAAGTATTGAGATATGAACCTGGGCAGAAATATGCACCACACTATGATTACTTTGTCGACAAGGTCAATATTGCTAGGGGTGGACACCGCGTAGCAACTGTACTGATGTATCTCACTGATGTGGCCAAAGGTGGTGAAACTGTGTTCCCTGAAGCAGAGATACCTTCACGCCGTAAGGCTGCAGAAATAGATCACAGTCTCTCTGAGTGTGCAAAGAAAGGAATTGCAGTGAAACCACGACGAGGAGATGCCCTTCTTTTCTTCAGTCTCACCCCACATGCTGTTCCAGACCCGAACAGTCTCCATGCGGGTTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCAACGAAGTGGATTCATGTTGACTCATTTGACAAGAACTTGGATGCTGGCGGGAACTGTGGAGATCTGAATGAGAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGAACTCCCGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

297

Amino Acids

32.63

Weight (kDa)

7.53

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	120 - 242	1.3e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	122 - 242	1.2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	138, 423
AccII	CGCG	2 cut(s)	188, 456
AccIII	TCCGGA	2 cut(s)	255, 266
AciI	CCGC	4 cut(s)	210, 454, 674, 759
AclWI	GGATC	3 cut(s)	201, 287, 300
AcoI	YGGCCR	1 cut(s)	489
AcuI	CTGAAG	3 cut(s)	221, 537, 613
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	385, 856
AleI	CACNNNNGTG	1 cut(s)	485
AluBI	AGCT	5 cut(s)	131, 199, 244, 264, 322
AluI	AGCT	5 cut(s)	131, 199, 244, 264, 322
Alw26I	GTCTC	3 cut(s)	569, 638, 671
AlwI	GGATC	3 cut(s)	201, 287, 300
Aor13HI	TCCGGA	2 cut(s)	255, 266
AoxI	GGCC	3 cut(s)	285, 315, 489
ApeKI	GCWGC	2 cut(s)	545, 800
AspS9I	GGNCC	2 cut(s)	253, 258
AsuHPI	GGTGA	6 cut(s)	11, 76, 368, 512, 628, 707
AvaII	GGWCC	2 cut(s)	253, 258
BaeI	ACNNNNGTAYC	2 cut(s)	458, 491
BalI	TGGCCA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	292
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	532, 787
BccI	CCATC	2 cut(s)	191, 789
BceAI	ACGGC	2 cut(s)	197, 522
BciT130I	CCWGG	2 cut(s)	387, 858
BcoDI	GTCTC	3 cut(s)	569, 638, 671
BfaI	CTAG	3 cut(s)	6, 126, 441
BfmI	CTRYAG	2 cut(s)	546, 865
BglII	AGATCT	2 cut(s)	111, 772
BisI	GCNGC	2 cut(s)	546, 801
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	547, 802
Bme1390I	CCNGG	2 cut(s)	387, 858
Bme18I	GGWCC	2 cut(s)	253, 258
BmgT120I	GGNCC	2 cut(s)	253, 258
BmiI	GGNNCC	2 cut(s)	122, 294
BmrFI	CCNGG	2 cut(s)	387, 858
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	2 cut(s)	604, 742
BmuI	ACTGGG	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	282, 288, 386, 805
BsaWI	WCCGGW	3 cut(s)	230, 255, 266
BsaXI	ACNNNNNCTCC	3 cut(s)	164, 194, 862
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	683
Bse8I	GATNNNNATC	1 cut(s)	182
BseAI	TCCGGA	2 cut(s)	255, 266
BseBI	CCWGG	2 cut(s)	387, 858
BseDI	CCNNGG	4 cut(s)	282, 288, 386, 805
BseGI	GGATG	1 cut(s)	757
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	259, 561
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	5 cut(s)	14, 17, 20, 624, 886
BseXI	GCAGC	2 cut(s)	532, 787
Bsh1236I	CGCG	2 cut(s)	188, 456
BshFI	GGCC	3 cut(s)	287, 317, 491
BsiSI	CCGG	3 cut(s)	231, 256, 267
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	3 cut(s)	569, 638, 671
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	3 cut(s)	287, 317, 491
Bsp13I	TCCGGA	2 cut(s)	255, 266
Bsp143I	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
Bsp1720I	GCTNAGC	1 cut(s)	245
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	4 cut(s)	210, 454, 674, 759
BspANI	GGCC	3 cut(s)	287, 317, 491
BspCNI	CTCAG	2 cut(s)	258, 562
BspEI	TCCGGA	2 cut(s)	255, 266
BspFNI	CGCG	2 cut(s)	188, 456
BspLI	GGNNCC	2 cut(s)	122, 294
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	3 cut(s)	201, 287, 300
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	4 cut(s)	282, 288, 386, 805
BssMI	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	3 cut(s)	282, 288, 805
Bst2UI	CCWGG	2 cut(s)	387, 858
Bst4CI	ACNGT	7 cut(s)	88, 466, 508, 563, 665, 767, 866
Bst6I	CTCTTC	3 cut(s)	38, 73, 197
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	242, 324, 757
BstDEI	CTNAG	2 cut(s)	245, 570
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	2 cut(s)	188, 456
BstKTI	GATC	7 cut(s)	114, 172, 180, 209, 295, 559, 775
BstMAI	GTCTC	3 cut(s)	569, 638, 671
BstMBI	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 323
BstNI	CCWGG	2 cut(s)	387, 858
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	385, 856
BstSFI	CTRYAG	2 cut(s)	546, 865
BstUI	CGCG	2 cut(s)	188, 456
BstV1I	GCAGC	2 cut(s)	532, 787
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	4 cut(s)	111, 206, 292, 772
BstYI	RGATCY	4 cut(s)	111, 206, 292, 772
BsuRI	GGCC	3 cut(s)	287, 317, 491
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	480, 600, 690
BtuMI	TCGCGA	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	242, 324, 757
Cfr13I	GGNCC	2 cut(s)	253, 258
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	5 cut(s)	117, 330, 644, 671, 725
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	2 cut(s)	245, 570
DpnI	GATC	7 cut(s)	113, 171, 179, 208, 294, 558, 774
DpnII	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	3 cut(s)	38, 73, 197
EarI	CTCTTC	3 cut(s)	38, 73, 197
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	3 cut(s)	282, 288, 805
Eco47I	GGWCC	2 cut(s)	253, 258
Eco57I	CTGAAG	3 cut(s)	221, 537, 613
EcoRII	CCWGG	2 cut(s)	385, 856
EcoT14I	CCWWGG	3 cut(s)	282, 288, 805
ErhI	CCWWGG	3 cut(s)	282, 288, 805
FaeI	CATG	5 cut(s)	120, 333, 647, 674, 728
FatI	CATG	5 cut(s)	116, 329, 643, 670, 724
FauI	CCCGC	2 cut(s)	667, 752
FblI	GTMKAC	2 cut(s)	138, 423
Fnu4HI	GCNGC	2 cut(s)	546, 801
FokI	GGATG	1 cut(s)	764
Fsp4HI	GCNGC	2 cut(s)	546, 801
FspBI	CTAG	3 cut(s)	6, 126, 441
GluI	GCNGC	2 cut(s)	546, 801
HaeIII	GGCC	3 cut(s)	287, 317, 491
HapII	CCGG	3 cut(s)	231, 256, 267
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	120, 333, 647, 674, 728
HincII	GTYRAC	2 cut(s)	424, 730
HindII	GTYRAC	2 cut(s)	424, 730
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	721, 731
HpaII	CCGG	3 cut(s)	231, 256, 267
HphI	GGTGA	6 cut(s)	11, 76, 368, 512, 628, 707
Hpy166II	GTNNAC	4 cut(s)	139, 424, 449, 730
Hpy188I	TCNGA	4 cut(s)	196, 237, 571, 777
Hpy188III	TCNNGA	5 cut(s)	187, 256, 267, 653, 848
Hpy8I	GTNNAC	4 cut(s)	139, 424, 449, 730
Hpy99I	CGWCG	2 cut(s)	218, 609
HpyAV	CCTTC	7 cut(s)	26, 91, 137, 540, 629, 686, 863
HpyCH4III	ACNGT	7 cut(s)	88, 466, 508, 563, 665, 767, 866
HpyCH4V	TGCA	6 cut(s)	326, 401, 548, 578, 593, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 323
HpyF3I	CTNAG	2 cut(s)	245, 570
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	120, 333, 647, 674, 728
Kpn2I	TCCGGA	2 cut(s)	255, 266
Kzo9I	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
LmnI	GCTCC	3 cut(s)	62, 196, 269
Lsp1109I	GCAGC	2 cut(s)	532, 787
LweI	GCATC	2 cut(s)	604, 742
MaeI	CTAG	3 cut(s)	6, 126, 441
MalI	GATC	7 cut(s)	113, 171, 179, 208, 294, 558, 774
MboI	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
MboII	GAAGA	8 cut(s)	25, 28, 31, 60, 214, 332, 371, 619
MflI	RGATCY	4 cut(s)	111, 206, 292, 772
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	1 cut(s)	588
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	820
MnlI	CCTC	9 cut(s)	32, 35, 38, 41, 76, 244, 307, 602, 864
Mox20I	TGGCCA	1 cut(s)	491
MroI	TCCGGA	2 cut(s)	255, 266
MscI	TGGCCA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	3 cut(s)	231, 256, 267
MspR9I	CCNGG	2 cut(s)	387, 858
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	387, 858
MvnI	CGCG	2 cut(s)	188, 456
MwoI	GCNNNNNNNGC	2 cut(s)	246, 323
NdeII	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
NlaIII	CATG	5 cut(s)	120, 333, 647, 674, 728
NlaIV	GGNNCC	2 cut(s)	122, 294
NmeAIII	GCCGAG	1 cut(s)	187
NruI	TCGCGA	1 cut(s)	188
NspI	RCATGY	1 cut(s)	647
OliI	CACNNNNGTG	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	721
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	547, 802
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	385, 856
PspGI	CCWGG	2 cut(s)	385, 856
PspN4I	GGNNCC	2 cut(s)	122, 294
PspPI	GGNCC	2 cut(s)	253, 258
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	4 cut(s)	111, 206, 292, 772
PsyI	GACNNNGTC	1 cut(s)	428
RruI	TCGCGA	1 cut(s)	188
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	485
SalI	GTCGAC	1 cut(s)	422
SatI	GCNGC	2 cut(s)	546, 801
Sau3AI	GATC	7 cut(s)	111, 169, 177, 206, 292, 556, 772
Sau96I	GGNCC	2 cut(s)	253, 258
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	387, 858
SfaNI	GCATC	2 cut(s)	604, 742
SfcI	CTRYAG	2 cut(s)	546, 865
SinI	GGWCC	2 cut(s)	253, 258
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	588
SsiI	CCGC	4 cut(s)	210, 454, 674, 759
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	3 cut(s)	6, 126, 441
StyD4I	CCNGG	2 cut(s)	385, 856
StyI	CCWWGG	3 cut(s)	282, 288, 805
TaaI	ACNGT	7 cut(s)	88, 466, 508, 563, 665, 767, 866
TaqI	TCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	588
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	721
TscAI	CASTG	3 cut(s)	487, 600, 690
TseI	GCWGC	2 cut(s)	545, 800
TspDTI	ATGAA	3 cut(s)	265, 396, 713
TspGWI	ACGGA	2 cut(s)	84, 170
TspRI	CASTG	3 cut(s)	487, 600, 690
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	253, 258
XceI	RCATGY	1 cut(s)	647
XmiI	GTMKAC	2 cut(s)	138, 423
XspI	CTAG	3 cut(s)	6, 126, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.