Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Forward (+)

11173819 .. 11176808

Gene Structure 2990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGACAATCAAATTAGGTCAAACCCTGAAATTAGGAGCAAACGAACGCCAGAGCAGAGAGATCCAAAACCCAAAACACTTCCCTTTCATCATTTCACAAATTCGTCAGATTTCCGTAAGGGCGCCCTCTGATTTTTTTCCTCAATCAATTTTCCCGCCAAAATACGCTCACGAAATCCTCAAATGGCGTTTTGAGCTTCGAAATCATCGCTCACCACTGGTAGTGTTATTAATTTCAGAAATGGGCATGGAATCCAGCTCCACCCACTTCACAAATATCAGAAGCTTAGATACTGATTCTAAGATTGAAGATAGTGGGAACAACTTAGTTATCGAGGCGTACCCTTTAGGAATGATGCCTCCGATGAATGCTGTCGATACAGAGGATGAGGGAGAGTCTGGAGTACTTGAACCGTATGTGGGGTTAGAGTTTGATTCAGCAGATATTGCCCGTGATTTTTACACTCTCTATGCAGCACGGATGGGGTTTAAAGTTCGAACTGGTCAGTTGTATCGCTCGAGAACTGATGGATCAGTCTCTTCTCGAAGATTTGTGTGCTCTAAGGAGGGGTTTCAGATTAGTTCACGGACAGGATGCCCGGCATTAATAAGGGTGCAGAGACGTGATTCTGGGAAATGGGTTGTAGACCTTTTCCTGAAGGATCGATACATGTATCATGGTCTTGGATCATCTACAGAGGAAAATCATTCCCCGATTTTTCAGAAGAAGAGTTCAATGCCAACAAATTCGGTTGTTGAAGTGTCTCATAGGCCAAAAGTCAAATTGATTAAGGCAATTGAGGATAAACCACCTTGCCCATCTGGAGTTATAACTGCCAAGCGCTTAAAACGGGGTGGAGATGAAATGCAGTCAGAAGTTGATCTATCTGCAGGTCTAGAGTTCAATTCAGCCAATGAAGCATACCAATTTTATCATGCATATGCTGAGAATGCAGGATTTAGAATCAGGATTGGTCAGTTGTTTCGTTCAAAGCTTGATGGTTCAATTACATCTCGGAGATTTGTGTGTTCAAAGGAAGGGTTTCAGCATCCATCACGAGTTGGTTGTGGGGCATACATGAGGATTAAGAGACAAGATTCTGGAAGATGGGTAGTGGACCGTTTTGATAAAAATCATAACCATGAGTTTGAGTCTCACCTGGAAGTTCAAAAGAAAAATCTATTTTCTTCAAAAAAGTTCATAGAAGAGGAGATCGGAGGGCTGGAGATTGAAGATATTGTTGACATAAACAATGGTAACCTTGTCAAAAGACATAGAGAAAATCACATTGGAAGTGATTGGTACAGTGTGCTGTTTGACTATTTTCAAACCAAACAGGCTGAAGATACAGGATTCTTTTATGCAGTAGAAGTTGATAATGGTAATTGCATGAGTATTTTCTGGGCTGATGGGAGGTCTAGGTTTTCATGCAGCCAGTTTGGTGATGCCATTATTTTCGACACCTCATATCGGAAAAGTATTTATCTGGTGCCATTTGCCGCTTTCATTGGAATCAACCACCACAAGCAACCGGTGCTTCTTGGCTGTGCCCTAGTTGCTGATGAGTCTGAGAAATCTTTTACTTGGTTGTTTCAAACATGGCTTAGGGCAATGTCAGGGCGTCGTCCTCTGTCAATAATAGCTGACCAAGATGATGTGATCCAGCAGGCCATCATGCAAGTTCTTCCAGGAACCCATCATCGTTTCTCGTTATGGCAGATCAAGGCAAAAGAAAGTGAGCATCTAAGTGTAATGAATGGTTCTTTTAAATATGAATATGAAAAATGCATTTATCAGTGTCAAACAGCCAATGAATTTGAAACCGCATGGAATGCACTCCTCAGCAGGTATGGGTTGAAGGATAACGCTTGGCTGAAAGCAATGTACGAAAAGCGCAGGAGTTGGGTTCCATTATACTTACGAGCTACATTCTTTGCTGGCATCCCCTTCAATGAAAGTATAGAATCATTCTTTGGTGCACATTTCAATGCCCAAACACCACTTAAGGAGTTTGTTTCACAATATGAAAGAGGCCTTGAGCGACGGCGTGAAGAAGAAATAAAAGAGGATTTTAACTCTTTTAACTTGAAACCTTACTTGCAGACGAAAGAACCATTAGAAGAACAATGTAGAAGACTTTATACACTGAACACATTCAGGGTATTTCAGAAAGAACTTCTACAATCCTATAGTTATCTAGGATTTAAGATTTATGATGAAGGGGCAATCATCAGGTATTTGGTCCGCAAGTGTGGGAATGACGATGAGAAATCTATAGTCACTGTTGGTGCGGCCATTCCCGAAGTGGGCTGTAGCTGTCGAATGTTTGAATTTGAAGGTATACTATGTAGGCATGTGTTGAGAGTTTTCCAAATCTTGGACATAAAAGAAGTTCCCCATTGCTATATCTTACGCCGTTGGACTAGAAATGCTGAATATGGTATTCCTTGTGAATCTGAATTGGGTGGAAACCCTCAAGAGCTGAAGGCCTTGATGGTGTGGAGTTTGAGAGAAGCAGCCTGTAAATACATAGAGGCTGGGGCAACATCGCTTGAAAAGCACAAGCTCGCCTACGAAATTATGCAAGAGGGCGGACGAAAACTTTGTTGGCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

873

Amino Acids

100.67

Weight (kDa)

8.23

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	152 - 220	7.6e-14	FAR1 DNA-binding domain
FAR1	PF03101	309 - 383	6.9e-19	FAR1 DNA-binding domain
MULE	PF10551	484 - 576	2.9e-24	MULE transposase domain
SWIM	PF04434	769 - 791	1.6e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
Acc36I	ACCTGC	2 cut(s)	881, 1836
AccB1I	GGYRCC	2 cut(s)	121, 1489
AccB7I	CCANNNNNTGG	1 cut(s)	2377
AccI	GTMKAC	2 cut(s)	645, 2341
AciI	CCGC	6 cut(s)	155, 1500, 1824, 2245, 2291, 2592
AclWI	GGATC	5 cut(s)	55, 538, 669, 694, 1654
AcoI	YGGCCR	1 cut(s)	2292
AcsI	RAATTY	4 cut(s)	99, 745, 1814, 2330
AcuI	CTGAAG	3 cut(s)	677, 1362, 2504
AcyI	GRCGYC	2 cut(s)	122, 1621
AfaI	GTAC	4 cut(s)	341, 405, 1304, 1886
AfeI	AGCGCT	1 cut(s)	842
AfiI	CCNNNNNNNGG	4 cut(s)	419, 1470, 2306, 2377
AflII	CTTAAG	1 cut(s)	2003
AflIII	ACRYGT	1 cut(s)	669
AgeI	ACCGGT	1 cut(s)	1531
AjiI	CACGTC	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	1158, 1687
AjuI	GAANNNNNNNTTGG	5 cut(s)	1272, 1304, 1956, 1988, 2590
AluBI	AGCT	9 cut(s)	196, 258, 285, 994, 1643, 1925, 2316, 2482, 2566
AluI	AGCT	9 cut(s)	196, 258, 285, 994, 1643, 1925, 2316, 2482, 2566
Alw21I	GWGCWC	2 cut(s)	560, 1981
Alw26I	GTCTC	5 cut(s)	541, 613, 768, 1084, 1158
Alw44I	GTGCAC	1 cut(s)	1977
AlwI	GGATC	5 cut(s)	55, 538, 669, 694, 1654
Ama87I	CYCGRG	1 cut(s)	517
Aor51HI	AGCGCT	1 cut(s)	842
AoxI	GGCC	5 cut(s)	770, 1668, 2032, 2292, 2487
ApaLI	GTGCAC	1 cut(s)	1977
ApeKI	GCWGC	3 cut(s)	473, 1431, 2516
ApoI	RAATTY	4 cut(s)	99, 745, 1814, 2330
ArsI	GACNNNNNNTTYG	2 cut(s)	2586, 2618
AseI	ATTAAT	2 cut(s)	230, 605
AsiGI	ACCGGT	1 cut(s)	1531
Asp700I	GAANNNNTTC	2 cut(s)	1041, 2153
AspLEI	GCGC	3 cut(s)	124, 843, 1896
AspS9I	GGNCC	2 cut(s)	1117, 2242
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	204, 1148, 1454
AsuII	TTCGAA	2 cut(s)	199, 496
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	1117, 2242
BaeGI	GKGCMC	2 cut(s)	1552, 1981
BanI	GGYRCC	2 cut(s)	121, 1489
BarI	GAAGNNNNNNTAC	6 cut(s)	274, 306, 650, 682, 2125, 2157
BauI	CACGAG	1 cut(s)	1056
BbsI	GAAGAC	1 cut(s)	2140
Bbv12I	GWGCWC	2 cut(s)	560, 1981
BbvCI	CCTCAGC	1 cut(s)	1841
BbvI	GCAGC	3 cut(s)	485, 1443, 2528
BceAI	ACGGC	2 cut(s)	2060, 2400
BciT130I	CCWGG	2 cut(s)	1160, 1689
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	5 cut(s)	541, 613, 768, 1084, 1158
BfaI	CTAG	5 cut(s)	896, 1419, 1553, 2198, 2424
BfmI	CTRYAG	5 cut(s)	693, 888, 2188, 2274, 2311
BfoI	RGCGCY	2 cut(s)	125, 844
BfrI	CTTAAG	1 cut(s)	2003
BfuAI	ACCTGC	2 cut(s)	881, 1836
BisI	GCNGC	5 cut(s)	474, 1432, 1500, 2292, 2517
BlsI	GCNGC	5 cut(s)	475, 1433, 1501, 2293, 2518
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	599, 1160, 1689
Bme18I	GGWCC	2 cut(s)	1117, 2242
BmeT110I	CYCGRG	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	1117, 2242
BmiI	GGNNCC	4 cut(s)	123, 1491, 1693, 1908
BmrFI	CCNGG	3 cut(s)	599, 1160, 1689
BmsI	GCATC	6 cut(s)	345, 584, 1057, 1435, 1750, 1950
BpiI	GAAGAC	1 cut(s)	2140
BpmI	CTGGAG	3 cut(s)	420, 843, 1244
Bpu10I	CCTNAGC	2 cut(s)	1604, 1841
Bpu14I	TTCGAA	2 cut(s)	199, 496
BpuEI	CTTGAG	2 cut(s)	2057, 2460
BpuMI	CCSGG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	1131
BsaHI	GRCGYC	2 cut(s)	122, 1621
BsaWI	WCCGGW	1 cut(s)	1531
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 1470, 2306, 2377
Bse118I	RCCGGY	1 cut(s)	1531
Bse1I	ACTGG	3 cut(s)	222, 505, 1435
Bse3DI	GCAATG	3 cut(s)	1617, 1887, 2398
Bse8I	GATNNNNATC	1 cut(s)	1131
BseBI	CCWGG	2 cut(s)	1160, 1689
BseCI	ATCGAT	1 cut(s)	664
BseGI	GGATG	5 cut(s)	391, 486, 599, 1048, 1941
BseJI	GATNNNNATC	1 cut(s)	1131
BseLI	CCNNNNNNNGG	4 cut(s)	419, 1470, 2306, 2377
BseMI	GCAATG	3 cut(s)	1617, 1887, 2398
BseMII	CTCAG	3 cut(s)	936, 1560, 1855
BseNI	ACTGG	3 cut(s)	222, 505, 1435
BseRI	GAGGAG	2 cut(s)	1223, 1829
BseSI	GKGCMC	2 cut(s)	1552, 1981
BseXI	GCAGC	3 cut(s)	485, 1443, 2528
BseYI	CCCAGC	1 cut(s)	2537
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	5 cut(s)	772, 1670, 2034, 2294, 2489
BshNI	GGYRCC	2 cut(s)	121, 1489
BshTI	ACCGGT	1 cut(s)	1531
BshVI	ATCGAT	1 cut(s)	664
BsiHKAI	GWGCWC	2 cut(s)	560, 1981
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	599, 1532
BslI	CCNNNNNNNGG	4 cut(s)	419, 1470, 2306, 2377
BsmAI	GTCTC	5 cut(s)	541, 613, 768, 1084, 1158
BsmBI	CGTCTC	1 cut(s)	613
BsmI	GAATGC	3 cut(s)	373, 955, 1837
BsnI	GGCC	5 cut(s)	772, 1670, 2034, 2294, 2489
BsoBI	CYCGRG	1 cut(s)	517
Bsp119I	TTCGAA	2 cut(s)	199, 496
Bsp1286I	GDGCHC	3 cut(s)	560, 1552, 1981
Bsp143I	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
BspACI	CCGC	6 cut(s)	155, 1500, 1824, 2245, 2291, 2592
BspANI	GGCC	5 cut(s)	772, 1670, 2034, 2294, 2489
BspCNI	CTCAG	3 cut(s)	937, 1561, 1854
BspDI	ATCGAT	1 cut(s)	664
BspLI	GGNNCC	4 cut(s)	123, 1491, 1693, 1908
BspMAI	CTGCAG	1 cut(s)	892
BspMI	ACCTGC	2 cut(s)	881, 1836
BspPI	GGATC	5 cut(s)	55, 538, 669, 694, 1654
BspT104I	TTCGAA	2 cut(s)	199, 496
BspT107I	GGYRCC	2 cut(s)	121, 1489
BspTI	CTTAAG	1 cut(s)	2003
BsrDI	GCAATG	3 cut(s)	1617, 1887, 2398
BsrFI	RCCGGY	1 cut(s)	1531
BsrI	ACTGG	3 cut(s)	222, 505, 1435
BssAI	RCCGGY	1 cut(s)	1531
BssMI	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
BssNAI	GTATAC	1 cut(s)	2342
BssNI	GRCGYC	2 cut(s)	122, 1621
BssSI	CACGAG	1 cut(s)	1056
Bst1107I	GTATAC	1 cut(s)	2342
Bst2BI	CACGAG	1 cut(s)	1056
Bst2UI	CCWGG	2 cut(s)	1160, 1689
Bst4CI	ACNGT	4 cut(s)	414, 1121, 1307, 2284
Bst6I	CTCTTC	3 cut(s)	544, 722, 1200
BstACI	GRCGYC	2 cut(s)	122, 1621
BstAFI	CTTAAG	1 cut(s)	2003
BstAPI	GCANNNNNTGC	3 cut(s)	446, 1534, 1832
BstBI	TTCGAA	2 cut(s)	199, 496
BstC8I	GCNNGC	3 cut(s)	1668, 1939, 2568
BstDEI	CTNAG	9 cut(s)	286, 300, 325, 561, 945, 1569, 1604, 1745, 1841
BstEII	GGTNACC	1 cut(s)	1256
BstF5I	GGATG	5 cut(s)	391, 486, 599, 1048, 1941
BstH2I	RGCGCY	2 cut(s)	125, 844
BstHHI	GCGC	3 cut(s)	124, 843, 1896
BstKTI	GATC	8 cut(s)	63, 533, 664, 689, 883, 1215, 1662, 1722
BstMAI	GTCTC	5 cut(s)	541, 613, 768, 1084, 1158
BstMBI	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
BstMWI	GCNNNNNNNGC	8 cut(s)	193, 446, 917, 950, 1534, 1556, 1832, 2557
BstNI	CCWGG	2 cut(s)	1160, 1689
BstNSI	RCATGY	2 cut(s)	673, 2357
BstPI	GGTNACC	1 cut(s)	1256
BstSCI	CCNGG	3 cut(s)	597, 1158, 1687
BstSFI	CTRYAG	5 cut(s)	693, 888, 2188, 2274, 2311
BstSLI	GKGCMC	2 cut(s)	1552, 1981
BstV1I	GCAGC	3 cut(s)	485, 1443, 2528
BstV2I	GAAGAC	1 cut(s)	2140
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	2342
Bsu15I	ATCGAT	1 cut(s)	664
BsuRI	GGCC	5 cut(s)	772, 1670, 2034, 2294, 2489
BsuTUI	ATCGAT	1 cut(s)	664
BtgZI	GCGATG	2 cut(s)	191, 2532
BtrI	CACGTC	1 cut(s)	623
BtsCI	GGATG	5 cut(s)	391, 486, 599, 1048, 1941
BtsIMutI	CAGTG	5 cut(s)	215, 1312, 1802, 2144, 2280
BveI	ACCTGC	2 cut(s)	881, 1836
Cac8I	GCNNGC	3 cut(s)	1668, 1939, 2568
CfoI	GCGC	3 cut(s)	124, 843, 1896
Cfr10I	RCCGGY	1 cut(s)	1531
Cfr13I	GGNCC	2 cut(s)	1117, 2242
ClaI	ATCGAT	1 cut(s)	664
CseI	GACGC	1 cut(s)	1610
Csp6I	GTAC	4 cut(s)	340, 404, 1303, 1885
CspAI	ACCGGT	1 cut(s)	1531
CviQI	GTAC	4 cut(s)	340, 404, 1303, 1885
DdeI	CTNAG	9 cut(s)	286, 300, 325, 561, 945, 1569, 1604, 1745, 1841
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	8 cut(s)	62, 532, 663, 688, 882, 1214, 1661, 1721
DpnII	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
DraI	TTTAAA	2 cut(s)	490, 1768
EaeI	YGGCCR	1 cut(s)	2292
Eam1104I	CTCTTC	3 cut(s)	544, 722, 1200
EarI	CTCTTC	3 cut(s)	544, 722, 1200
EciI	GGCGGA	1 cut(s)	2607
Eco147I	AGGCCT	2 cut(s)	2034, 2489
Eco47I	GGWCC	2 cut(s)	1117, 2242
Eco47III	AGCGCT	1 cut(s)	842
Eco57I	CTGAAG	3 cut(s)	677, 1362, 2504
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	1256
EcoO65I	GGTNACC	1 cut(s)	1256
EcoRII	CCWGG	2 cut(s)	1158, 1687
EcoT22I	ATGCAT	2 cut(s)	940, 1790
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	613
FauI	CCCGC	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	940
FblI	GTMKAC	2 cut(s)	645, 2341
Fnu4HI	GCNGC	5 cut(s)	474, 1432, 1500, 2292, 2517
FokI	GGATG	5 cut(s)	398, 493, 606, 1035, 1928
Fsp4HI	GCNGC	5 cut(s)	474, 1432, 1500, 2292, 2517
FspBI	CTAG	5 cut(s)	896, 1419, 1553, 2198, 2424
GlaI	GCGC	3 cut(s)	123, 842, 1895
GluI	GCNGC	5 cut(s)	474, 1432, 1500, 2292, 2517
GsaI	CCCAGC	1 cut(s)	2541
GsuI	CTGGAG	3 cut(s)	420, 843, 1244
HaeII	RGCGCY	2 cut(s)	125, 844
HaeIII	GGCC	5 cut(s)	772, 1670, 2034, 2294, 2489
HapII	CCGG	2 cut(s)	599, 1532
HgaI	GACGC	1 cut(s)	1610
HhaI	GCGC	3 cut(s)	124, 843, 1896
Hin1I	GRCGYC	2 cut(s)	122, 1621
Hin6I	GCGC	3 cut(s)	122, 841, 1894
HinP1I	GCGC	3 cut(s)	122, 841, 1894
HincII	GTYRAC	1 cut(s)	1243
HindII	GTYRAC	1 cut(s)	1243
HindIII	AAGCTT	2 cut(s)	283, 992
HpaII	CCGG	2 cut(s)	599, 1532
HphI	GGTGA	3 cut(s)	204, 1148, 1454
Hpy166II	GTNNAC	6 cut(s)	584, 646, 1117, 1243, 1979, 2342
Hpy8I	GTNNAC	6 cut(s)	584, 646, 1117, 1243, 1979, 2342
Hpy99I	CGWCG	2 cut(s)	1626, 2046
HpyAV	CCTTC	7 cut(s)	652, 1031, 1852, 1957, 2213, 2330, 2479
HpyCH4III	ACNGT	4 cut(s)	414, 1121, 1307, 2284
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	8 cut(s)	193, 446, 917, 950, 1534, 1556, 1832, 2557
HpyF3I	CTNAG	9 cut(s)	286, 300, 325, 561, 945, 1569, 1604, 1745, 1841
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	2 cut(s)	122, 1621
HspAI	GCGC	3 cut(s)	122, 841, 1894
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
LmnI	GCTCC	2 cut(s)	35, 263
Lsp1109I	GCAGC	3 cut(s)	485, 1443, 2528
LweI	GCATC	6 cut(s)	345, 584, 1057, 1435, 1750, 1950
MaeI	CTAG	5 cut(s)	896, 1419, 1553, 2198, 2424
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	1256, 2278
MalI	GATC	8 cut(s)	62, 532, 663, 688, 882, 1214, 1661, 1721
MboI	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	560, 1552, 1981
Mly113I	GGCGCC	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	404, 1160, 1574
MmeI	TCCRAC	1 cut(s)	2399
Mph1103I	ATGCAT	2 cut(s)	940, 1790
MroXI	GAANNNNTTC	2 cut(s)	1041, 2153
MslI	CAYNNNNRTG	4 cut(s)	939, 1140, 1746, 1986
MspCI	CTTAAG	1 cut(s)	2003
MspI	CCGG	2 cut(s)	599, 1532
MspR9I	CCNGG	3 cut(s)	599, 1160, 1689
MunI	CAATTG	1 cut(s)	795
Mva1269I	GAATGC	3 cut(s)	373, 955, 1837
MvaI	CCWGG	2 cut(s)	1160, 1689
MwoI	GCNNNNNNNGC	8 cut(s)	193, 446, 917, 950, 1534, 1556, 1832, 2557
NarI	GGCGCC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
NlaIV	GGNNCC	4 cut(s)	123, 1491, 1693, 1908
NmuCI	GTSAC	1 cut(s)	2278
NsiI	ATGCAT	2 cut(s)	940, 1790
NspI	RCATGY	2 cut(s)	673, 2357
NspV	TTCGAA	2 cut(s)	199, 496
PaeR7I	CTCGAG	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	2034, 2489
PciI	ACATGT	1 cut(s)	669
PctI	GAATGC	3 cut(s)	373, 955, 1837
PdmI	GAANNNNTTC	2 cut(s)	1041, 2153
PflMI	CCANNNNNTGG	1 cut(s)	2377
PfoI	TCCNGGA	1 cut(s)	1687
PinAI	ACCGGT	1 cut(s)	1531
PkrI	GCNGC	5 cut(s)	475, 1433, 1501, 2293, 2518
PleI	GAGTC	3 cut(s)	403, 1159, 1573
PluTI	GGCGCC	1 cut(s)	125
PpsI	GAGTC	3 cut(s)	403, 1159, 1573
PscI	ACATGT	1 cut(s)	669
PshBI	ATTAAT	2 cut(s)	230, 605
PsiI	TTATAA	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	1158, 1687
PspEI	GGTNACC	1 cut(s)	1256
PspFI	CCCAGC	1 cut(s)	2537
PspGI	CCWGG	2 cut(s)	1158, 1687
PspN4I	GGNNCC	4 cut(s)	123, 1491, 1693, 1908
PspPI	GGNCC	2 cut(s)	1117, 2242
PstI	CTGCAG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	4 cut(s)	341, 405, 1304, 1886
RsaNI	GTAC	4 cut(s)	340, 404, 1303, 1885
RseI	CAYNNNNRTG	4 cut(s)	939, 1140, 1746, 1986
SatI	GCNGC	5 cut(s)	474, 1432, 1500, 2292, 2517
Sau3AI	GATC	8 cut(s)	60, 530, 661, 686, 880, 1212, 1659, 1719
Sau96I	GGNCC	2 cut(s)	1117, 2242
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	3 cut(s)	404, 1160, 1574
ScrFI	CCNGG	3 cut(s)	599, 1160, 1689
SduI	GDGCHC	3 cut(s)	560, 1552, 1981
SfaNI	GCATC	6 cut(s)	345, 584, 1057, 1435, 1750, 1950
SfcI	CTRYAG	5 cut(s)	693, 888, 2188, 2274, 2311
SfoI	GGCGCC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	517
SfuI	TTCGAA	2 cut(s)	199, 496
SinI	GGWCC	2 cut(s)	1117, 2242
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	4 cut(s)	939, 1140, 1746, 1986
SmlI	CTYRAG	4 cut(s)	517, 2003, 2036, 2475
SmoI	CTYRAG	4 cut(s)	517, 2003, 2036, 2475
SseBI	AGGCCT	2 cut(s)	2034, 2489
SsiI	CCGC	6 cut(s)	155, 1500, 1824, 2245, 2291, 2592
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	5 cut(s)	896, 1419, 1553, 2198, 2424
StuI	AGGCCT	2 cut(s)	2034, 2489
StyD4I	CCNGG	3 cut(s)	597, 1158, 1687
TaaI	ACNGT	4 cut(s)	414, 1121, 1307, 2284
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	9 cut(s)	199, 333, 375, 496, 518, 544, 664, 1458, 2320
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	2 cut(s)	1502, 2294
TscAI	CASTG	5 cut(s)	222, 1312, 1802, 2151, 2287
TseFI	GTSAC	1 cut(s)	2278
TseI	GCWGC	3 cut(s)	473, 1431, 2516
Tsp45I	GTSAC	1 cut(s)	2278
TspGWI	ACGGA	3 cut(s)	103, 493, 601
TspRI	CASTG	5 cut(s)	222, 1312, 1802, 2151, 2287
Van91I	CCANNNNNTGG	1 cut(s)	2377
Vha464I	CTTAAG	1 cut(s)	2003
VneI	GTGCAC	1 cut(s)	1977
VpaK11BI	GGWCC	2 cut(s)	1117, 2242
VspI	ATTAAT	2 cut(s)	230, 605
XapI	RAATTY	4 cut(s)	99, 745, 1814, 2330
XbaI	TCTAGA	1 cut(s)	895
XceI	RCATGY	2 cut(s)	673, 2357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2302
XhoI	CTCGAG	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	645, 2341
XmnI	GAANNNNTTC	2 cut(s)	1041, 2153
XspI	CTAG	5 cut(s)	896, 1419, 1553, 2198, 2424
ZrmI	AGTACT	1 cut(s)	405
Zsp2I	ATGCAT	2 cut(s)	940, 1790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.